Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006921

Physical Location & Seq

Genomic Coordinates Reverse (-)

5995412 .. 5997350

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGATTCTTTTAAAAAAATACCTGCAGCTTGTGCTTCCAATGTGGTTGTTTACTTGATGCTTGTTTGGTCCAAGGCCATTGACTGCTACTTACTGCCCATGTTGAGATTTCCTCTGTTGATCCTCCATGGCTTCTTCAAACGTTGGCTGATTAAGGCCATGACCCTGCAAATTGAAGAGTACCATGGTACAAGTACTAGAAATAAAGTTTATGATGCTTCTGCGCTTTACTTGCAGAGCAAGATCAGCCCTTCAACTCAGATTCTGAAGATTTCACAAACTTGGAGAGAGACTAGTTTAACTGTCAACTTTGCAAACAACCAAGAGTTTGATGACATGTATGAAGGAGTTCCGCTGAAATGGAAATTCAATTCCATGTCAAAGAGATCCAGTAGTTCTAGCACTTCCTCAGCTTTCAAGCCAGAGCAAAAGCAACACTTTGAGCTTGTATTTGACTTGCAGCACAAGGAAAAGGTAATAAATTTGTACTTGCCTTATGTTTTAGAGACATTTGAGGCTATGAAAAACGAAAGGAAGATTGTCAAGCTGCATACACTTGTGAGAATAGATGCTTTTAAAATAAGATGGGAGGCAATCAATCTCGAACACCCCGCAACATTCCAGACGGTAGCCATGGAACCAGAGCTAAAGAAAACGGTTTTGGAGGACTTGGACAGGTTTGTTAAGAGGAAAGAGTTCTATCAAAGTGTGGGAAGGGCTTGGAAGCGTGGGTACCTTCTATATGGTCCTCCAGGCACTGGGAAATCATCCCTAATAGCTGCCATGGCTAATTACCTCAAGTTTGATGTTTATGATTTGCAACTCACACATTTGAAAACAGATATGGAACTGAGAAAAGTATTGCTGTCAACATCAAACAAGTCGATCCTTGTTATTGAGGATATAGATTGTAGCCAGCCGGGGGTGCAAGATCGAAAAAATGCTAATGGCATCAGAAAGCCTGAGTTAGAAGGCAATCAGCTTACACTATCTGGACTGCTAAACTTCATAGATGGGCTTTGGTCAAGTTGTGGAGAGGAGAGAATCGTTGTGTTCACTACCAATCACAAGAGCAAGCTTGACCCTGCATTGCTGCGTTCGGGACGAATGGACTTGCACATCCACATGTCGTATTGCACCTACGAAGGCTTCAAAAGTTTGGCTTTTAATTACCTCAGAACTTGTGAACAGAAGCACCTTTTGTTTGAGGAGATTGAAGGCCTTCTGAAGAAAACAAAGGTCACTCCTGCACAAGTGGCAGAGCAGCTGATGAAGAGTGAGGAGCCTGAAGTTGCTCTTCAAGGTTTGATCACACTGTTAAAGCAAAAGAAAAACCAAGGGAAAGATGAGTATCAGGAGGAAGATGAATATGAAGGTGAAAACAAACAATTAACATATTTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

469

Amino Acids

54.15

Weight (kDa)

8.59

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006921)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12400 FvH4_3g12400 FvH4_3g12400 FvH4_3g12400 FvH4_3g12402
malus_domestica	MD05G1250600.v1.1
prunus_persica	Prupe.4G113000_v2.0.a1
pyrus_communis	pycom05g22850
rosa_chinensis	RchiOBHm_Chr5g0020271 RchiOBHm_Chr5g0020291
rosa_laevigata	RLG00000032514 RLG00000032515
rosa_multiflora	Rmu_sc0002087.1_g000006 Rmu_sc0002087.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057930 Rroxscaffold_1G00057940
rosa_rugosa	Rorug05G0058100 Rorug05G0058200 Rorug05G0058300
rosa_samantha	Rh5AG148600 Rh5AG148700 Rh5BG148100 Rh5CG159500 Rh5CG159800
rosa_wichuraiana	Rw5G013150 Rw5G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccB7I	CCANNNNNTGG	1 cut(s)	758
AciI	CCGC	2 cut(s)	353, 612
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	3 cut(s)	115, 381, 880
AcsI	RAATTY	2 cut(s)	365, 481
AcuI	CTGAAG	3 cut(s)	287, 1247, 1308
AfaI	GTAC	5 cut(s)	182, 190, 196, 488, 734
AfiI	CCNNNNNNNGG	2 cut(s)	758, 922
AflIII	ACRYGT	2 cut(s)	336, 1125
AgsI	TTSAA	9 cut(s)	139, 176, 255, 370, 418, 835, 1153, 1217, 1301
AhlI	ACTAGT	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	751
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	9 cut(s)	29, 413, 445, 547, 646, 779, 982, 1078, 1267
AluI	AGCT	9 cut(s)	29, 413, 445, 547, 646, 779, 982, 1078, 1267
Alw26I	GTCTC	2 cut(s)	284, 500
AlwI	GGATC	3 cut(s)	115, 381, 880
AlwNI	CAGNNNCTG	2 cut(s)	265, 758
AoxI	GGCC	3 cut(s)	75, 156, 1219
ApeKI	GCWGC	6 cut(s)	26, 460, 547, 779, 1093, 1264
ApoI	RAATTY	2 cut(s)	365, 481
Asp700I	GAANNNNTTC	3 cut(s)	348, 695, 1221
Asp718I	GGTACC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	69, 746
AsuC2I	CCSGG	1 cut(s)	921
AsuHPI	GGTGA	1 cut(s)	1388
AvaII	GGWCC	2 cut(s)	69, 746
BanI	GGYRCC	1 cut(s)	732
BarI	GAAGNNNNNNTAC	2 cut(s)	716, 748
BbvCI	CCTCAGC	1 cut(s)	409
BbvI	GCAGC	6 cut(s)	38, 472, 534, 766, 1080, 1276
BccI	CCATC	2 cut(s)	579, 1007
BciT130I	CCWGG	1 cut(s)	753
BclI	TGATCA	1 cut(s)	1308
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	2 cut(s)	284, 500
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	3 cut(s)	198, 294, 399
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	6 cut(s)	27, 461, 548, 780, 1094, 1265
BlsI	GCNGC	6 cut(s)	28, 462, 549, 781, 1095, 1266
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	753, 921
Bme18I	GGWCC	2 cut(s)	69, 746
BmgT120I	GGNCC	2 cut(s)	69, 746
BmiI	GGNNCC	3 cut(s)	639, 734, 1284
BmrFI	CCNGG	2 cut(s)	753, 921
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	4 cut(s)	48, 205, 559, 960
BmuI	ACTGGG	1 cut(s)	768
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	921
BsaBI	GATNNNNATC	1 cut(s)	1350
BsaJI	CCNNGG	7 cut(s)	72, 127, 184, 633, 783, 920, 1336
Bsc4I	CCNNNNNNNGG	2 cut(s)	758, 922
Bse1I	ACTGG	2 cut(s)	390, 763
Bse3DI	GCAATG	1 cut(s)	1088
Bse8I	GATNNNNATC	1 cut(s)	1350
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	7 cut(s)	72, 127, 184, 633, 783, 920, 1336
BseGI	GGATG	2 cut(s)	767, 1119
BseJI	GATNNNNATC	1 cut(s)	1350
BseLI	CCNNNNNNNGG	2 cut(s)	758, 922
BseMI	GCAATG	1 cut(s)	1088
BseMII	CTCAG	5 cut(s)	272, 423, 842, 954, 1189
BseNI	ACTGG	2 cut(s)	390, 763
BseRI	GAGGAG	3 cut(s)	1052, 1223, 1295
BseXI	GCAGC	6 cut(s)	38, 472, 534, 766, 1080, 1276
BsgI	GTGCAG	1 cut(s)	1233
BshFI	GGCC	3 cut(s)	77, 158, 1221
BshNI	GGYRCC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	1116
BslI	CCNNNNNNNGG	2 cut(s)	758, 922
BsmAI	GTCTC	2 cut(s)	284, 500
BsmFI	GGGAC	1 cut(s)	1116
BsnI	GGCC	3 cut(s)	77, 158, 1221
Bsp143I	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
Bsp19I	CCATGG	4 cut(s)	127, 184, 633, 783
BspACI	CCGC	2 cut(s)	353, 612
BspANI	GGCC	3 cut(s)	77, 158, 1221
BspCNI	CTCAG	5 cut(s)	271, 422, 843, 955, 1188
BspLI	GGNNCC	3 cut(s)	639, 734, 1284
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	3 cut(s)	115, 381, 880
BspQI	GCTCTTC	1 cut(s)	1302
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	1088
BsrI	ACTGG	2 cut(s)	390, 763
BssECI	CCNNGG	7 cut(s)	72, 127, 184, 633, 783, 920, 1336
BssMI	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
BssT1I	CCWWGG	6 cut(s)	72, 127, 184, 633, 783, 1336
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	4 cut(s)	304, 628, 658, 1317
Bst6I	CTCTTC	3 cut(s)	171, 1268, 1302
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	917, 1076
BstDEI	CTNAG	5 cut(s)	258, 409, 851, 963, 1175
BstDSI	CCRYGG	4 cut(s)	127, 184, 633, 783
BstF5I	GGATG	2 cut(s)	767, 1119
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	6 cut(s)	123, 246, 389, 888, 934, 1311
BstMAI	GTCTC	2 cut(s)	284, 500
BstMBI	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 232, 246, 785, 925, 1256
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	2 cut(s)	340, 1129
BstSCI	CCNGG	2 cut(s)	751, 919
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	6 cut(s)	38, 472, 534, 766, 1080, 1276
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	77, 158, 1221
BtgI	CCRYGG	4 cut(s)	127, 184, 633, 783
BtsCI	GGATG	2 cut(s)	767, 1119
BtsIMutI	CAGTG	2 cut(s)	756, 1313
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	917, 1076
CaiI	CAGNNNCTG	2 cut(s)	265, 758
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	69, 746
Csp6I	GTAC	5 cut(s)	181, 189, 195, 487, 733
CviAII	CATG	9 cut(s)	100, 128, 160, 185, 337, 376, 634, 784, 1126
CviQI	GTAC	5 cut(s)	181, 189, 195, 487, 733
DdeI	CTNAG	5 cut(s)	258, 409, 851, 963, 1175
DpnI	GATC	6 cut(s)	122, 245, 388, 887, 933, 1310
DpnII	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
DraI	TTTAAA	2 cut(s)	13, 577
Eam1104I	CTCTTC	3 cut(s)	171, 1268, 1302
EarI	CTCTTC	3 cut(s)	171, 1268, 1302
Eco130I	CCWWGG	6 cut(s)	72, 127, 184, 633, 783, 1336
Eco147I	AGGCCT	1 cut(s)	1221
Eco47I	GGWCC	2 cut(s)	69, 746
Eco57I	CTGAAG	3 cut(s)	287, 1247, 1308
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	6 cut(s)	72, 127, 184, 633, 783, 1336
ErhI	CCWWGG	6 cut(s)	72, 127, 184, 633, 783, 1336
FaeI	CATG	9 cut(s)	103, 131, 163, 188, 340, 379, 637, 787, 1129
FalI	AAGNNNNNCTT	6 cut(s)	422, 454, 1147, 1179, 1281, 1313
FaqI	GGGAC	1 cut(s)	1116
FatI	CATG	9 cut(s)	99, 127, 159, 184, 336, 375, 633, 783, 1125
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	1308
Fnu4HI	GCNGC	6 cut(s)	27, 461, 548, 780, 1094, 1265
FokI	GGATG	2 cut(s)	754, 1106
Fsp4HI	GCNGC	6 cut(s)	27, 461, 548, 780, 1094, 1265
FspBI	CTAG	3 cut(s)	198, 294, 399
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	6 cut(s)	27, 461, 548, 780, 1094, 1265
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	77, 158, 1221
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	9 cut(s)	103, 131, 163, 188, 340, 379, 637, 787, 1129
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	307, 870
HindII	GTYRAC	2 cut(s)	307, 870
HindIII	AAGCTT	1 cut(s)	1076
HinfI	GANTC	3 cut(s)	5, 262, 1044
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	1 cut(s)	1388
Hpy166II	GTNNAC	5 cut(s)	52, 307, 870, 1056, 1187
Hpy188I	TCNGA	5 cut(s)	261, 267, 956, 1178, 1227
Hpy188III	TCNNGA	5 cut(s)	602, 622, 993, 1101, 1355
Hpy8I	GTNNAC	5 cut(s)	52, 307, 870, 1056, 1187
HpyAV	CCTTC	9 cut(s)	261, 338, 708, 746, 965, 1139, 1211, 1232, 1367
HpyCH4III	ACNGT	4 cut(s)	304, 628, 658, 1317
HpyCH4IV	ACGT	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 232, 246, 785, 925, 1256
HpyF3I	CTNAG	5 cut(s)	258, 409, 851, 963, 1175
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	9 cut(s)	103, 131, 163, 188, 340, 379, 637, 787, 1129
HspAI	GCGC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	736
Ksp22I	TGATCA	1 cut(s)	1308
Kzo9I	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
LguI	GCTCTTC	1 cut(s)	1302
LmnI	GCTCC	1 cut(s)	1282
Lsp1109I	GCAGC	6 cut(s)	38, 472, 534, 766, 1080, 1276
LweI	GCATC	4 cut(s)	48, 205, 559, 960
MaeI	CTAG	3 cut(s)	198, 294, 399
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	1240
MalI	GATC	6 cut(s)	122, 245, 388, 887, 933, 1310
MboI	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
MboII	GAAGA	8 cut(s)	127, 188, 280, 547, 1240, 1285, 1289, 1373
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	7 cut(s)	171, 365, 370, 481, 790, 1168, 1388
MroXI	GAANNNNTTC	3 cut(s)	348, 695, 1221
MseI	TTAA	8 cut(s)	12, 153, 299, 576, 684, 1167, 1319, 1391
MslI	CAYNNNNRTG	1 cut(s)	1124
MspA1I	CMGCKG	2 cut(s)	355, 1267
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	2 cut(s)	753, 921
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	6 cut(s)	32, 232, 246, 785, 925, 1256
NciI	CCSGG	1 cut(s)	921
NcoI	CCATGG	4 cut(s)	127, 184, 633, 783
NdeII	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
NlaIII	CATG	9 cut(s)	103, 131, 163, 188, 340, 379, 637, 787, 1129
NlaIV	GGNNCC	3 cut(s)	639, 734, 1284
NmuCI	GTSAC	1 cut(s)	1240
NspI	RCATGY	2 cut(s)	340, 1129
PceI	AGGCCT	1 cut(s)	1221
PciI	ACATGT	2 cut(s)	336, 1125
PciSI	GCTCTTC	1 cut(s)	1302
PdmI	GAANNNNTTC	3 cut(s)	348, 695, 1221
PfeI	GAWTC	3 cut(s)	5, 262, 1044
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	6 cut(s)	28, 462, 549, 781, 1095, 1266
PscI	ACATGT	2 cut(s)	336, 1125
Psp1406I	AACGTT	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	639, 734, 1284
PspPI	GGNCC	2 cut(s)	69, 746
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	2 cut(s)	265, 758
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	1267
RsaI	GTAC	5 cut(s)	182, 190, 196, 488, 734
RsaNI	GTAC	5 cut(s)	181, 189, 195, 487, 733
RseI	CAYNNNNRTG	1 cut(s)	1124
SapI	GCTCTTC	1 cut(s)	1302
SaqAI	TTAA	8 cut(s)	12, 153, 299, 576, 684, 1167, 1319, 1391
SatI	GCNGC	6 cut(s)	27, 461, 548, 780, 1094, 1265
Sau3AI	GATC	6 cut(s)	120, 243, 386, 885, 931, 1308
Sau96I	GGNCC	2 cut(s)	69, 746
ScaI	AGTACT	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	753, 921
SfaNI	GCATC	4 cut(s)	48, 205, 559, 960
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	69, 746
SmiMI	CAYNNNNRTG	1 cut(s)	1124
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	7 cut(s)	171, 365, 370, 481, 790, 1168, 1388
SseBI	AGGCCT	1 cut(s)	1221
SsiI	CCGC	2 cut(s)	353, 612
SspMI	CTAG	3 cut(s)	198, 294, 399
StuI	AGGCCT	1 cut(s)	1221
StyD4I	CCNGG	2 cut(s)	751, 919
StyI	CCWWGG	6 cut(s)	72, 127, 184, 633, 783, 1336
TaaI	ACNGT	4 cut(s)	304, 628, 658, 1317
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	603, 884, 934
TasI	AATT	7 cut(s)	171, 365, 370, 481, 790, 1168, 1388
TatI	WGTACW	2 cut(s)	194, 486
TfiI	GAWTC	3 cut(s)	5, 262, 1044
Tru1I	TTAA	8 cut(s)	12, 153, 299, 576, 684, 1167, 1319, 1391
Tru9I	TTAA	8 cut(s)	12, 153, 299, 576, 684, 1167, 1319, 1391
TscAI	CASTG	2 cut(s)	763, 1320
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	6 cut(s)	26, 460, 547, 779, 1093, 1264
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	6 cut(s)	357, 536, 997, 1286, 1380, 1386
TspRI	CASTG	2 cut(s)	763, 1320
Van91I	CCANNNNNTGG	1 cut(s)	758
VpaK11BI	GGWCC	2 cut(s)	69, 746
XapI	RAATTY	2 cut(s)	365, 481
XceI	RCATGY	2 cut(s)	340, 1129
XmnI	GAANNNNTTC	3 cut(s)	348, 695, 1221
XspI	CTAG	3 cut(s)	198, 294, 399
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.