Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006921

Physical Location & Seq

Genomic Coordinates Reverse (-)

7376866 .. 7378341

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12402.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTACTTCATCCATCCCATTCTGAGATTTCCTCATCCAACCATCCATTCCTCCTCCAAACGCCGATCACCTGATAATGAGCTCATGGTCATACAAATTGAGGAGTACCAAAGCAATGATGGGTTGAAAAGAGACCAGTTTTCCATCCACTTCTCAAACAAGCAAGAGTTTGAAGACATTTATGAAGGAATTCAGATGAAATGGAAATACAATTCCAAATCCAAGAAGTCCAATTATTCTAGCATAGCAGGGAAAAAGCAATTCTTTGAGCTCACATTTGATGTCAAACACAAGGAAATGGTCATGGATGCGTACTTGCCTTACGTTATAGAGACATTCAAGGCTATGAAAGATGCAGAAAAGATTGTCAAGCTGCATACTCTTCCAAGGTCAGATACCTACACAATGATGAGATGGAGTGCAATCAATCTCGAACACCCTGCAGCATTCGAGACAATAGCCATGGATACCAAGCAAAAGAGATTGCTTTTGGAGGACTTGGACAGGTTTGTTAAGAGGAAAGAGTTCAATCAAAGAGTAGGAAGGGCTTGGAAAAGGGGGTATCTGCTGTATGGTCCTCCAGGGACTGGTAAATCATCCCTGATAGCTGCTATTGCTAATTATCTGAAGTTCGATATCTATGACTTGCAACTCACTCATTTGACATCGGATGTGGAATTGAGAAGAGTGTTGCTGGCAACAACAAATAAATCTATACTCGTGATTGAGGATATAGATTGTAGTCAACTGAAGCTGCAAGATAAATCGAATAGCAGTAAGAAAAATGACTCAGAAAGCTATCAGCTTTCGCTATCGGGACTACTGAACTTCACAGATGGCCTGTGGTCTGGCTGTGGAGAAGAGAGAATCATTGTATTCACTACCAATCACAAGAGTAAGCTTGACCCTGCATTGCTGCGATCAGGCCGAATGGACATGCATTTCCACATGTCCTACTGCTCACACGAGGGGTTCAAAACATTGGCCTCCACATACCTAGGCATCAAAGAACACCAACCATTGTTTGATGAGATTAAAAGCCTACTGCAGAAGACAGATGTCACTCCTGCACAAGTTGCCGAGGAGCTGATGAAGAGTGAGGATGCTAACGTTGCACTCCAAGCTTTGATCACAAGGCTAAAGGAAATTAAGAAAAAGAAGGAAGATGACAAGAAGGCCAAAGATGAAGCAAAAGTAAAGAACGATACAAAGAAAGTTGATCCTAAGCAGTTAACATATTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

416

Amino Acids

48.14

Weight (kDa)

9.05

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	188 - 318	3.6e-19	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	320 - 391	1.3e-23	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006921)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12400 FvH4_3g12400 FvH4_3g12400 FvH4_3g12400 FvH4_3g12402
malus_domestica	MD05G1250600.v1.1
prunus_persica	Prupe.4G113000_v2.0.a1
pyrus_communis	pycom05g22850
rosa_chinensis	RchiOBHm_Chr5g0020271 RchiOBHm_Chr5g0020291
rosa_laevigata	RLG00000032514 RLG00000032515
rosa_multiflora	Rmu_sc0002087.1_g000006 Rmu_sc0002087.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057930 Rroxscaffold_1G00057940
rosa_rugosa	Rorug05G0058100 Rorug05G0058200 Rorug05G0058300
rosa_samantha	Rh5AG148600 Rh5AG148700 Rh5BG148100 Rh5CG159500 Rh5CG159800
rosa_wichuraiana	Rw5G013150 Rw5G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	587
AclI	AACGTT	1 cut(s)	1110
AclWI	GGATC	1 cut(s)	1214
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	2 cut(s)	647, 770
AfaI	GTAC	3 cut(s)	5, 107, 314
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	948
AgsI	TTSAA	5 cut(s)	127, 173, 340, 529, 976
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
Alw21I	GWGCWC	2 cut(s)	84, 273
Alw26I	GTCTC	3 cut(s)	126, 326, 446
AlwI	GGATC	1 cut(s)	1214
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	4 cut(s)	838, 925, 984, 1176
ApeKI	GCWGC	5 cut(s)	373, 443, 608, 754, 916
ApoI	RAATTY	1 cut(s)	189
Asp700I	GAANNNNTTC	2 cut(s)	189, 524
AspA2I	CCTAGG	1 cut(s)	997
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	575
AvrII	CCTAGG	1 cut(s)	997
BanII	GRGCYC	2 cut(s)	84, 273
BauI	CACGAG	2 cut(s)	719, 965
BbsI	GAAGAC	2 cut(s)	180, 1058
Bbv12I	GWGCWC	2 cut(s)	84, 273
BbvI	GCAGC	5 cut(s)	360, 455, 595, 741, 903
BccI	CCATC	6 cut(s)	21, 50, 113, 152, 408, 830
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	460
BclI	TGATCA	1 cut(s)	1128
BcoDI	GTCTC	3 cut(s)	126, 326, 446
BfaI	CTAG	2 cut(s)	240, 998
BfmI	CTRYAG	2 cut(s)	441, 1046
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	5 cut(s)	374, 444, 609, 755, 917
BlnI	CCTAGG	1 cut(s)	997
BlsI	GCNGC	5 cut(s)	375, 445, 610, 756, 918
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	4 cut(s)	298, 343, 1011, 1093
BoxI	GACNNNNGTC	1 cut(s)	1058
BpiI	GAAGAC	2 cut(s)	180, 1058
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	1224
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	386, 462, 581, 997, 1080
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	136, 592
Bse3DI	GCAATG	2 cut(s)	121, 911
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	5 cut(s)	386, 462, 581, 997, 1080
BseGI	GGATG	9 cut(s)	9, 13, 34, 42, 144, 313, 596, 676, 1108
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	2 cut(s)	121, 911
BseMII	CTCAG	2 cut(s)	14, 804
BseNI	ACTGG	2 cut(s)	136, 592
BseRI	GAGGAG	3 cut(s)	43, 116, 1097
BseXI	GCAGC	5 cut(s)	360, 455, 595, 741, 903
BsgI	GTGCAG	1 cut(s)	1053
BshFI	GGCC	4 cut(s)	840, 927, 986, 1178
BsiHKAI	GWGCWC	2 cut(s)	84, 273
BslFI	GGGAC	2 cut(s)	598, 831
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	3 cut(s)	126, 326, 446
BsmFI	GGGAC	2 cut(s)	598, 831
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	4 cut(s)	840, 927, 986, 1178
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	84, 273
Bsp143I	GATC	4 cut(s)	65, 920, 1128, 1219
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	4 cut(s)	840, 927, 986, 1178
BspCNI	CTCAG	2 cut(s)	15, 803
BspMAI	CTGCAG	2 cut(s)	445, 1050
BspPI	GGATC	1 cut(s)	1214
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	2 cut(s)	121, 911
BsrI	ACTGG	2 cut(s)	136, 592
BssECI	CCNNGG	5 cut(s)	386, 462, 581, 997, 1080
BssMI	GATC	4 cut(s)	65, 920, 1128, 1219
BssSI	CACGAG	2 cut(s)	719, 965
BssT1I	CCWWGG	3 cut(s)	386, 462, 997
Bst2BI	CACGAG	2 cut(s)	719, 965
Bst2UI	CCWGG	1 cut(s)	582
Bst6I	CTCTTC	4 cut(s)	387, 679, 855, 1088
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	3 cut(s)	23, 790, 1224
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	9 cut(s)	9, 13, 34, 42, 144, 313, 596, 676, 1108
BstKTI	GATC	4 cut(s)	68, 923, 1131, 1222
BstMAI	GTCTC	3 cut(s)	126, 326, 446
BstMBI	GATC	4 cut(s)	65, 920, 1128, 1219
BstMWI	GCNNNNNNNGC	4 cut(s)	614, 1076, 1112, 1121
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	940, 952
BstPAI	GACNNNNGTC	1 cut(s)	1058
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	2 cut(s)	441, 1046
BstV1I	GCAGC	5 cut(s)	360, 455, 595, 741, 903
BstV2I	GAAGAC	2 cut(s)	180, 1058
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	4 cut(s)	840, 927, 986, 1178
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	9 cut(s)	9, 13, 34, 42, 144, 313, 596, 676, 1108
Cac8I	GCNNGC	1 cut(s)	696
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	4, 106, 313
CviAII	CATG	5 cut(s)	85, 304, 463, 937, 949
CviQI	GTAC	3 cut(s)	4, 106, 313
DdeI	CTNAG	3 cut(s)	23, 790, 1224
DpnI	GATC	4 cut(s)	67, 922, 1130, 1221
DpnII	GATC	4 cut(s)	65, 920, 1128, 1219
Eam1104I	CTCTTC	4 cut(s)	387, 679, 855, 1088
EarI	CTCTTC	4 cut(s)	387, 679, 855, 1088
Ecl136II	GAGCTC	2 cut(s)	82, 271
Eco130I	CCWWGG	3 cut(s)	386, 462, 997
Eco24I	GRGCYC	2 cut(s)	84, 273
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	575
Eco53kI	GAGCTC	2 cut(s)	82, 271
Eco57I	CTGAAG	2 cut(s)	647, 770
EcoICRI	GAGCTC	2 cut(s)	82, 271
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	3 cut(s)	386, 462, 997
EcoT22I	ATGCAT	1 cut(s)	942
EcoT38I	GRGCYC	2 cut(s)	84, 273
ErhI	CCWWGG	3 cut(s)	386, 462, 997
FaeI	CATG	5 cut(s)	88, 307, 466, 940, 952
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	598, 831
FatI	CATG	5 cut(s)	84, 303, 462, 936, 948
FbaI	TGATCA	1 cut(s)	1128
Fnu4HI	GCNGC	5 cut(s)	374, 444, 609, 755, 917
FokI	GGATG	7 cut(s)	21, 29, 131, 320, 583, 683, 1115
FriOI	GRGCYC	2 cut(s)	84, 273
Fsp4HI	GCNGC	5 cut(s)	374, 444, 609, 755, 917
FspBI	CTAG	2 cut(s)	240, 998
GluI	GCNGC	5 cut(s)	374, 444, 609, 755, 917
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	840, 927, 986, 1178
Hin1II	CATG	5 cut(s)	88, 307, 466, 940, 952
HincII	GTYRAC	2 cut(s)	746, 1233
HindII	GTYRAC	2 cut(s)	746, 1233
HindIII	AAGCTT	2 cut(s)	899, 1122
HinfI	GANTC	2 cut(s)	788, 867
HpaI	GTTAAC	1 cut(s)	1233
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	2 cut(s)	746, 1233
Hpy188I	TCNGA	6 cut(s)	24, 195, 394, 627, 670, 793
Hpy188III	TCNNGA	4 cut(s)	431, 451, 721, 816
Hpy8I	GTNNAC	2 cut(s)	746, 1233
HpyAV	CCTTC	4 cut(s)	179, 537, 1153, 1168
HpyCH4IV	ACGT	2 cut(s)	324, 1110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	614, 1076, 1112, 1121
HpyF3I	CTNAG	3 cut(s)	23, 790, 1224
HpySE526I	ACGT	2 cut(s)	324, 1110
Hsp92II	CATG	5 cut(s)	88, 307, 466, 940, 952
Ksp22I	TGATCA	1 cut(s)	1128
KspAI	GTTAAC	1 cut(s)	1233
Kzo9I	GATC	4 cut(s)	65, 920, 1128, 1219
LmnI	GCTCC	1 cut(s)	1084
Lsp1109I	GCAGC	5 cut(s)	360, 455, 595, 741, 903
LweI	GCATC	4 cut(s)	298, 343, 1011, 1093
MaeI	CTAG	2 cut(s)	240, 998
MaeII	ACGT	2 cut(s)	324, 1110
MaeIII	GTNAC	1 cut(s)	1060
MalI	GATC	4 cut(s)	67, 922, 1130, 1221
MboI	GATC	4 cut(s)	65, 920, 1128, 1219
MboII	GAAGA	7 cut(s)	185, 374, 696, 872, 1063, 1105, 1175
MhlI	GDGCHC	2 cut(s)	84, 273
MluCI	AATT	8 cut(s)	96, 189, 211, 232, 260, 619, 677, 1146
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	942
MroXI	GAANNNNTTC	2 cut(s)	189, 524
MseI	TTAA	4 cut(s)	513, 1035, 1149, 1232
MslI	CAYNNNNRTG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	4 cut(s)	614, 1076, 1112, 1121
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	4 cut(s)	65, 920, 1128, 1219
NlaIII	CATG	5 cut(s)	88, 307, 466, 940, 952
NmeAIII	GCCGAG	1 cut(s)	1105
NmuCI	GTSAC	1 cut(s)	1060
NsiI	ATGCAT	1 cut(s)	942
NspI	RCATGY	2 cut(s)	940, 952
PciI	ACATGT	1 cut(s)	948
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	2 cut(s)	189, 524
PfeI	GAWTC	1 cut(s)	867
PflMI	CCANNNNNTGG	1 cut(s)	587
PkrI	GCNGC	5 cut(s)	375, 445, 610, 756, 918
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PscI	ACATGT	1 cut(s)	948
PshAI	GACNNNNGTC	1 cut(s)	1058
Psp124BI	GAGCTC	2 cut(s)	84, 273
Psp1406I	AACGTT	1 cut(s)	1110
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	575
PstI	CTGCAG	2 cut(s)	445, 1050
PstNI	CAGNNNCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	5, 107, 314
RsaNI	GTAC	3 cut(s)	4, 106, 313
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	2 cut(s)	84, 273
SaqAI	TTAA	4 cut(s)	513, 1035, 1149, 1232
SatI	GCNGC	5 cut(s)	374, 444, 609, 755, 917
Sau3AI	GATC	4 cut(s)	65, 920, 1128, 1219
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	84, 273
SfaNI	GCATC	4 cut(s)	298, 343, 1011, 1093
SfcI	CTRYAG	2 cut(s)	441, 1046
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	8 cut(s)	96, 189, 211, 232, 260, 619, 677, 1146
SspMI	CTAG	2 cut(s)	240, 998
SstI	GAGCTC	2 cut(s)	84, 273
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	3 cut(s)	386, 462, 997
TaiI	ACGT	2 cut(s)	327, 1113
TaqI	TCGA	4 cut(s)	432, 450, 633, 767
TasI	AATT	8 cut(s)	96, 189, 211, 232, 260, 619, 677, 1146
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	4 cut(s)	513, 1035, 1149, 1232
Tru9I	TTAA	4 cut(s)	513, 1035, 1149, 1232
TseFI	GTSAC	1 cut(s)	1060
TseI	GCWGC	5 cut(s)	373, 443, 608, 754, 916
Tsp45I	GTSAC	1 cut(s)	1060
TspDTI	ATGAA	5 cut(s)	198, 212, 362, 1106, 1200
Van91I	CCANNNNNTGG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	2 cut(s)	940, 952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	997
XmnI	GAANNNNTTC	2 cut(s)	189, 524
XspI	CTAG	2 cut(s)	240, 998
Zsp2I	ATGCAT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.