FvH4_3g19520

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008479
Physical Location & Seq
Forward (+)
12638300 .. 12641131
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19520.t3

Sequence Viewer

Length: 708 bp
ATGGTATTCTCAGCCAACCCACTATCCCTCAGCGTTTCCGACCCTTTCTTCGACTCATGGCTGCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCTCCGCCACATCTGCCGCCACAACATCCGCCGCCACACCCTCCACCTCATCCTCCACCTCCACCGTAAATGGCTTCTTCACCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCTCCACCAACCCCTTCGCCAAGCTCACCAACGACGACCTCGCCGCCCCTACGCCGCCGTGGCAGGCCGCGTTCATCGGCGACTACGAGTCCTATTCGTTCCCGGTGTCTGGTGCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTCAAGCGCTATGCTCGCAACTATGCTTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTGTATCAGATGCCATGGGCTGCTGCTGGATTGATATTTTCTTTAGCACTGTGGGAAATCTTCAAACACTGCAGTGCAATGTGGGGACTGGATCAATACCCAACAATTCAGCAAACCATAATTCGCGTTGCTCAATGCGTGGCTGCTGTTATCCTGATATATTCGGGTGTTCAAATGGCTTTATTCTCCGCACTCAGTGTCAATTATGCAGGAATGATACTGCATGCTGGATTTCGGACGCTGACTCGTGCAAAGCAAGCTTCTCATGGTAGATCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

236

Amino Acids

25.83

Weight (kDa)

8.71

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 93 - 209 6.5e-10 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 296, 552
AciI CCGC 8 cut(s) 111, 123, 135, 138, 270, 281, 294, 615
AclWI GGATC 1 cut(s) 525
AdeI CACNNNGTG 1 cut(s) 623
AfeI AGCGCT 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 335, 354, 355
AgsI TTSAA 2 cut(s) 490, 599
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 360
AleI CACNNNNGTG 1 cut(s) 498
AluBI AGCT 2 cut(s) 250, 686
AluI AGCT 2 cut(s) 250, 686
Alw21I GWGCWC 2 cut(s) 96, 343
AlwI GGATC 1 cut(s) 525
Ama87I CYCGRG 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 2 cut(s) 291, 345
ApeKI GCWGC 4 cut(s) 61, 446, 449, 569
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 346, 358
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 178, 244
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 358
BauI CACGAG 1 cut(s) 672
Bbv12I GWGCWC 2 cut(s) 96, 343
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 4 cut(s) 48, 433, 436, 556
BccI CCATC 1 cut(s) 212
BceAI ACGGC 2 cut(s) 88, 268
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 379
BglI GCCNNNNNGGC 1 cut(s) 286
BisI GCNGC 9 cut(s) 62, 123, 138, 270, 281, 294, 447, 450, 570
BlsI GCNGC 9 cut(s) 63, 124, 139, 271, 282, 295, 448, 451, 571
Bme1390I CCNGG 2 cut(s) 329, 362
Bme18I GGWCC 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 346, 358
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 329, 362
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 219, 426
BmuI ACTGGG 1 cut(s) 343
Bpu10I CCTNAGC 2 cut(s) 29, 342
BpuMI CCSGG 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 284, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 335, 354, 355
Bse1I ACTGG 2 cut(s) 349, 519
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 284, 440
BseGI GGATG 3 cut(s) 131, 155, 210
BseLI CCNNNNNNNGG 3 cut(s) 335, 354, 355
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 4 cut(s) 24, 43, 356, 634
BseNI ACTGG 2 cut(s) 349, 519
BseRI GAGGAG 2 cut(s) 97, 206
BseXI GCAGC 4 cut(s) 48, 433, 436, 556
Bsh1236I CGCG 2 cut(s) 296, 552
BshFI GGCC 2 cut(s) 293, 347
BsiHKAI GWGCWC 2 cut(s) 96, 343
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 3 cut(s) 335, 354, 355
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 2 cut(s) 293, 347
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 96, 343
Bsp143I GATC 2 cut(s) 517, 698
Bsp19I CCATGG 1 cut(s) 440
BspACI CCGC 8 cut(s) 111, 123, 135, 138, 270, 281, 294, 615
BspANI GGCC 2 cut(s) 293, 347
BspCNI CTCAG 4 cut(s) 23, 42, 355, 633
BspFNI CGCG 2 cut(s) 296, 552
BspLI GGNNCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 500
BspPI GGATC 1 cut(s) 525
BsrDI GCAATG 1 cut(s) 510
BsrI ACTGG 2 cut(s) 349, 519
BssECI CCNNGG 2 cut(s) 284, 440
BssMI GATC 2 cut(s) 517, 698
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 172, 477
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 4 cut(s) 291, 385, 651, 684
BstDEI CTNAG 4 cut(s) 10, 29, 342, 620
BstDSI CCRYGG 2 cut(s) 284, 440
BstF5I GGATG 3 cut(s) 131, 155, 210
BstFNI CGCG 2 cut(s) 296, 552
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 520, 701
BstMBI GATC 2 cut(s) 517, 698
BstMWI GCNNNNNNNGC 4 cut(s) 119, 286, 384, 683
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 327, 360
BstSFI CTRYAG 1 cut(s) 496
BstUI CGCG 2 cut(s) 296, 552
BstV1I GCAGC 4 cut(s) 48, 433, 436, 556
BsuRI GGCC 2 cut(s) 293, 347
BtgI CCRYGG 2 cut(s) 284, 440
BtsCI GGATG 3 cut(s) 131, 155, 210
BtsI GCAGTG 2 cut(s) 493, 505
BtsIMutI CAGTG 4 cut(s) 473, 493, 505, 628
Cac8I GCNNGC 4 cut(s) 291, 385, 651, 684
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 346, 358
CseI GACGC 2 cut(s) 53, 673
CviAII CATG 4 cut(s) 57, 441, 650, 692
DdeI CTNAG 4 cut(s) 10, 29, 342, 620
DpnI GATC 2 cut(s) 519, 700
DpnII GATC 2 cut(s) 517, 698
DraIII CACNNNGTG 1 cut(s) 623
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 230
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 2 cut(s) 100, 124
Eco130I CCWWGG 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 358
Eco47III AGCGCT 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 4 cut(s) 60, 444, 653, 695
FaiI YATR 9 cut(s) 58, 381, 393, 442, 545, 586, 633, 651, 693
FaqI GGGAC 1 cut(s) 525
FatI CATG 4 cut(s) 56, 440, 649, 691
Fnu4HI GCNGC 9 cut(s) 62, 123, 138, 270, 281, 294, 447, 450, 570
FokI GGATG 3 cut(s) 118, 142, 197
Fsp4HI GCNGC 9 cut(s) 62, 123, 138, 270, 281, 294, 447, 450, 570
GlaI GCGC 1 cut(s) 377
GluI GCNGC 9 cut(s) 62, 123, 138, 270, 281, 294, 447, 450, 570
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 2 cut(s) 293, 347
HapII CCGG 1 cut(s) 329
HgaI GACGC 2 cut(s) 53, 673
HhaI GCGC 1 cut(s) 378
Hin1II CATG 4 cut(s) 60, 444, 653, 695
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 3 cut(s) 53, 314, 670
HpaII CCGG 1 cut(s) 329
HphI GGTGA 2 cut(s) 178, 244
Hpy188I TCNGA 3 cut(s) 40, 435, 663
Hpy188III TCNNGA 2 cut(s) 580, 702
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 172, 477
HpyCH4V TGCA 6 cut(s) 210, 498, 503, 635, 649, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 286, 384, 683
HpyF3I CTNAG 4 cut(s) 10, 29, 342, 620
Hsp92II CATG 4 cut(s) 60, 444, 653, 695
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 517, 698
Lsp1109I GCAGC 4 cut(s) 48, 433, 436, 556
LweI GCATC 2 cut(s) 219, 426
MalI GATC 2 cut(s) 519, 700
MboI GATC 2 cut(s) 517, 698
MboII GAAGA 6 cut(s) 40, 175, 217, 403, 406, 478
MhlI GDGCHC 2 cut(s) 96, 343
MluCI AATT 3 cut(s) 531, 546, 628
MlyI GAGTC 3 cut(s) 47, 323, 664
MmeI TCCRAC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 498
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 329, 362
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 2 cut(s) 296, 552
MwoI GCNNNNNNNGC 4 cut(s) 119, 286, 384, 683
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 440
NdeII GATC 2 cut(s) 517, 698
NlaIII CATG 4 cut(s) 60, 444, 653, 695
NlaIV GGNNCC 1 cut(s) 359
NspI RCATGY 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 498
PaeI GCATGC 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 9 cut(s) 63, 124, 139, 271, 282, 295, 448, 451, 571
PleI GAGTC 3 cut(s) 47, 322, 664
PpsI GAGTC 3 cut(s) 47, 322, 664
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 2 cut(s) 346, 358
PspXI VCTCGAGB 1 cut(s) 89
PstI CTGCAG 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 498
SatI GCNGC 9 cut(s) 62, 123, 138, 270, 281, 294, 447, 450, 570
Sau3AI GATC 2 cut(s) 517, 698
Sau96I GGNCC 2 cut(s) 346, 358
SchI GAGTC 3 cut(s) 47, 323, 664
ScrFI CCNGG 2 cut(s) 329, 362
SduI GDGCHC 2 cut(s) 96, 343
SetI ASST 7 cut(s) 107, 155, 167, 191, 252, 267, 688
SfaNI GCATC 2 cut(s) 219, 426
SfcI CTRYAG 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SphI GCATGC 1 cut(s) 653
Sse9I AATT 3 cut(s) 531, 546, 628
SsiI CCGC 8 cut(s) 111, 123, 135, 138, 270, 281, 294, 615
StyD4I CCNGG 2 cut(s) 327, 360
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 2 cut(s) 172, 477
TaqI TCGA 3 cut(s) 51, 90, 701
TasI AATT 3 cut(s) 531, 546, 628
TauI GCSGC 5 cut(s) 125, 140, 272, 283, 296
TscAI CASTG 4 cut(s) 480, 500, 505, 628
TseI GCWGC 4 cut(s) 61, 446, 449, 569
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 4 cut(s) 480, 500, 505, 628
VpaK11BI GGWCC 1 cut(s) 358
XceI RCATGY 1 cut(s) 653
XhoI CTCGAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.