Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008479

Physical Location & Seq

Genomic Coordinates Reverse (-)

66894083 .. 66896734

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCATGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACAGTCTCCGCCGCCACAACCTCCACCTCCACCTCCACCTCCGCCGCCACCTCACCTCCACCTCCACCTCCACCGCAAATGGGTTCTTCATCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCACCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTATTGGCGACTACGAGTCCTACTCGTTCCCGATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAATCTTTAAGCGCTGCGGTGAAATGTGGGGACTGGATCAATACCCAACAATTCAGCAAACCATAATACGTGTTGCTCAATGTGTAGCTGCTGTTATCCTGATATATTCGGGTGTTCAAATGGCTCTATTCTCGGCACTTAGTGTCACTTATGCAGGAATGATACTGCACACTGGATTTCGGACGCTGGCTCGTGCAAAGCAAGCTTCTCGTGGTAGATCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

207

Amino Acids

22.1

Weight (kDa)

10.62

Isoelectric Point (pI)

68.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27540 AT4G27540
fragaria_vesca	FvH4_3g19520 FvH4_3g19520 FvH4_3g19520
malus_domestica	MD03G1231400.v1.1 MD06G1175000.v1.1
prunus_persica	Prupe.4G176600_v2.0.a1 Prupe.4G176600_v2.0.a1
pyrus_communis	pycom03g17890
rosa_chinensis	RchiOBHm_Chr5g0032761
rosa_laevigata	RLG00000007968 RLG00000033426
rosa_roxburghii	Rroxscaffold_1G00047340 Rroxscaffold_1G00047800 Rroxscaffold_2G00092440
rosa_rugosa	Rorug05G0133500
rosa_samantha	Rh2AG295500 Rh2DG319400 Rh5AG226300 Rh5BG227400 Rh5DG232100
rosa_wichuraiana	Rw5G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	108, 120, 123, 153, 156, 185, 284, 295, 414
AclWI	GGATC	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	539
AfeI	AGCGCT	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	515
AhdI	GACNNNNNGTC	1 cut(s)	327
AluBI	AGCT	3 cut(s)	264, 485, 602
AluI	AGCT	3 cut(s)	264, 485, 602
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	40, 121
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	362, 365, 411, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	156, 258, 428
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	276
BauI	CACGAG	2 cut(s)	588, 606
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	349, 352, 398, 472
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	2 cut(s)	88, 282
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	40, 121
BfoI	RGCGCY	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	8 cut(s)	123, 156, 284, 295, 363, 366, 412, 486
BlsI	GCNGC	8 cut(s)	124, 157, 285, 296, 364, 367, 413, 487
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	276
BmeRI	GACNNNNNGTC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
Bpu10I	CCTNAGC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	435, 574
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	24, 43
BseNI	ACTGG	2 cut(s)	435, 574
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	349, 352, 398, 472
BsgI	GTGCAG	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	40, 121
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	441
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	433, 614
BspACI	CCGC	9 cut(s)	108, 120, 123, 153, 156, 185, 284, 295, 414
BspCNI	CTCAG	2 cut(s)	23, 42
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	435, 574
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	433, 614
BssSI	CACGAG	2 cut(s)	588, 606
Bst2BI	CACGAG	2 cut(s)	588, 606
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	305, 585, 600
BstDEI	CTNAG	3 cut(s)	10, 29, 536
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	2 cut(s)	436, 617
BstMAI	GTCTC	2 cut(s)	40, 121
BstMBI	GATC	2 cut(s)	433, 614
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 599
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	4 cut(s)	349, 352, 398, 472
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	305, 585, 600
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	2 cut(s)	22, 589
CviAII	CATG	1 cut(s)	57
DdeI	CTNAG	3 cut(s)	10, 29, 536
DpnI	GATC	2 cut(s)	435, 616
DpnII	GATC	2 cut(s)	433, 614
DraIII	CACNNNGTG	1 cut(s)	539
DriI	GACNNNNNGTC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	244
Eam1105I	GACNNNNNGTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	3 cut(s)	97, 109, 142
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	276
Eco47III	AGCGCT	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	1 cut(s)	60
FaiI	YATR	5 cut(s)	58, 394, 461, 502, 549
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	8 cut(s)	123, 156, 284, 295, 363, 366, 412, 486
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	8 cut(s)	123, 156, 284, 295, 363, 366, 412, 486
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	8 cut(s)	123, 156, 284, 295, 363, 366, 412, 486
HaeII	RGCGCY	1 cut(s)	412
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	2 cut(s)	22, 589
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	2 cut(s)	53, 328
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	156, 258, 428
Hpy188I	TCNGA	2 cut(s)	40, 579
Hpy188III	TCNNGA	3 cut(s)	342, 496, 618
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	224, 551, 565, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 599
HpyF3I	CTNAG	3 cut(s)	10, 29, 536
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	433, 614
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	8 cut(s)	93, 321, 354, 416, 509, 537, 555, 569
Lsp1109I	GCAGC	4 cut(s)	349, 352, 398, 472
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	2 cut(s)	435, 616
MboI	GATC	2 cut(s)	433, 614
MboII	GAAGA	3 cut(s)	40, 189, 231
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	47, 337
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	300, 599
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	433, 614
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	541
PaeR7I	CTCGAG	1 cut(s)	89
PkrI	GCNGC	8 cut(s)	124, 157, 285, 296, 364, 367, 413, 487
PleI	GAGTC	2 cut(s)	47, 336
PpsI	GAGTC	2 cut(s)	47, 336
Ppu21I	YACGTR	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	276
PspPPI	RGGWCCY	1 cut(s)	276
PspXI	VCTCGAGB	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	123, 156, 284, 295, 363, 366, 412, 486
Sau3AI	GATC	2 cut(s)	433, 614
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	2 cut(s)	47, 337
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	9 cut(s)	108, 120, 123, 153, 156, 185, 284, 295, 414
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	3 cut(s)	51, 90, 617
TasI	AATT	1 cut(s)	447
TauI	GCSGC	4 cut(s)	125, 158, 286, 297
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	4 cut(s)	362, 365, 411, 485
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	276
XhoI	CTCGAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.