Rroxscaffold_1G00047800

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008479
Physical Location & Seq
Reverse (-)
67647872 .. 67650625
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047800.1

Sequence Viewer

Length: 729 bp
ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCATGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACAGTCTCCGCCGCCACAACCTCCACCTCCACCTCCACCTCCGCCGCCACGTCAACCTCCACCTCCACCTCCACCTCCACCGCAAATGGGTTCTTCATCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCACCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTATTGGCGACTACGAGTCCTACTCGTTCCCGGTGTCTAGCTCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTGAAGAGATATGCTAGGAACTATGCGTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAATCTTTAAGCGCTGCGGTGAAATGTGGGGACTGGATCAATACCCAACAATTCAGCAAACCATAATACGTGTTGCTCAATGTGTAGCTGCTGTTATCCTGATATATTCGGGTGTTCAAATGGCTCTATTCTCGGCACTTAGTGTCACTTATGCAGGAATGATACTGCACACTGGATTTCGGACGCTGGCTCGTGCAAAGCAAGCTTCTCGTGGTAGATCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

242

Amino Acids

26.52

Weight (kDa)

8.85

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 101 - 229 6.8e-14 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 108, 120, 123, 153, 156, 192, 291, 302, 519
AclWI GGATC 1 cut(s) 546
AdeI CACNNNGTG 1 cut(s) 644
AfeI AGCGCT 1 cut(s) 515
AfiI CCNNNNNNNGG 3 cut(s) 198, 375, 376
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 1 cut(s) 620
AhdI GACNNNNNGTC 1 cut(s) 334
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 4 cut(s) 271, 360, 590, 707
AluI AGCT 4 cut(s) 271, 360, 590, 707
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 40, 121
AlwI GGATC 1 cut(s) 546
Ama87I CYCGRG 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 515
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 4 cut(s) 467, 470, 516, 590
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 3 cut(s) 283, 367, 379
AsuC2I CCSGG 2 cut(s) 316, 350
AsuHPI GGTGA 2 cut(s) 265, 533
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 283, 379
BauI CACGAG 2 cut(s) 693, 711
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 4 cut(s) 454, 457, 503, 577
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 88, 289
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 2 cut(s) 316, 350
BcoDI GTCTC 2 cut(s) 40, 121
BfaI CTAG 2 cut(s) 357, 405
BfoI RGCGCY 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 307
BisI GCNGC 8 cut(s) 123, 156, 291, 302, 468, 471, 517, 591
BlsI GCNGC 8 cut(s) 124, 157, 292, 303, 469, 472, 518, 592
Bme1390I CCNGG 3 cut(s) 316, 350, 383
Bme18I GGWCC 2 cut(s) 283, 379
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 283, 367, 379
BmiI GGNNCC 2 cut(s) 62, 380
BmrFI CCNGG 3 cut(s) 316, 350, 383
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 316, 350
BsaAI YACGTR 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 375, 376
Bse1I ACTGG 3 cut(s) 370, 540, 679
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 198, 375, 376
BseMII CTCAG 3 cut(s) 24, 43, 377
BseNI ACTGG 3 cut(s) 370, 540, 679
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 4 cut(s) 454, 457, 503, 577
BsgI GTGCAG 1 cut(s) 653
BshFI GGCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 315, 350
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 198, 375, 376
BsmAI GTCTC 2 cut(s) 40, 121
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 538, 719
BspACI CCGC 9 cut(s) 108, 120, 123, 153, 156, 192, 291, 302, 519
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 3 cut(s) 23, 42, 376
BspLI GGNNCC 2 cut(s) 62, 380
BspPI GGATC 1 cut(s) 546
BsrI ACTGG 3 cut(s) 370, 540, 679
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 538, 719
BssSI CACGAG 2 cut(s) 693, 711
Bst2BI CACGAG 2 cut(s) 693, 711
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 2 cut(s) 251, 389
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 312, 690, 705
BstDEI CTNAG 4 cut(s) 10, 29, 363, 641
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 2 cut(s) 541, 722
BstMAI GTCTC 2 cut(s) 40, 121
BstMBI GATC 2 cut(s) 538, 719
BstMWI GCNNNNNNNGC 2 cut(s) 307, 704
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 3 cut(s) 314, 348, 381
BstV1I GCAGC 4 cut(s) 454, 457, 503, 577
BsuRI GGCC 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 3 cut(s) 312, 690, 705
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 283, 367, 379
CseI GACGC 2 cut(s) 22, 694
CviAII CATG 1 cut(s) 57
DdeI CTNAG 4 cut(s) 10, 29, 363, 641
DpnI GATC 2 cut(s) 540, 721
DpnII GATC 2 cut(s) 538, 719
DraIII CACNNNGTG 1 cut(s) 644
DriI GACNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 251, 389
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 2 cut(s) 251, 389
EciI GGCGGA 3 cut(s) 97, 109, 142
Eco47I GGWCC 2 cut(s) 283, 379
Eco47III AGCGCT 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 60
FaiI YATR 8 cut(s) 58, 402, 414, 451, 499, 566, 607, 654
FaqI GGGAC 1 cut(s) 546
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 8 cut(s) 123, 156, 291, 302, 468, 471, 517, 591
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 8 cut(s) 123, 156, 291, 302, 468, 471, 517, 591
FspBI CTAG 2 cut(s) 357, 405
GlaI GCGC 1 cut(s) 515
GluI GCNGC 8 cut(s) 123, 156, 291, 302, 468, 471, 517, 591
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 1 cut(s) 368
HapII CCGG 2 cut(s) 315, 350
HgaI GACGC 2 cut(s) 22, 694
HhaI GCGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 2 cut(s) 53, 335
HpaII CCGG 2 cut(s) 315, 350
HphI GGTGA 2 cut(s) 265, 533
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 40, 684
Hpy188III TCNNGA 2 cut(s) 601, 723
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 2 cut(s) 161, 571
HpyCH4V TGCA 4 cut(s) 231, 656, 670, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 704
HpyF3I CTNAG 4 cut(s) 10, 29, 363, 641
HpySE526I ACGT 2 cut(s) 161, 571
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 2 cut(s) 538, 719
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 4 cut(s) 454, 457, 503, 577
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 357, 405
MaeII ACGT 2 cut(s) 161, 571
MaeIII GTNAC 1 cut(s) 646
MalI GATC 2 cut(s) 540, 721
MboI GATC 2 cut(s) 538, 719
MboII GAAGA 6 cut(s) 40, 196, 238, 406, 424, 427
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 552
MlyI GAGTC 2 cut(s) 47, 344
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 1 cut(s) 510
MspI CCGG 2 cut(s) 315, 350
MspR9I CCNGG 3 cut(s) 316, 350, 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 307, 704
NciI CCSGG 2 cut(s) 316, 350
NdeII GATC 2 cut(s) 538, 719
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 2 cut(s) 62, 380
NmeAIII GCCGAG 1 cut(s) 614
NmuCI GTSAC 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 8 cut(s) 124, 157, 292, 303, 469, 472, 518, 592
PleI GAGTC 2 cut(s) 47, 343
PpsI GAGTC 2 cut(s) 47, 343
Ppu21I YACGTR 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 62, 380
PspPI GGNCC 3 cut(s) 283, 367, 379
PspPPI RGGWCCY 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 89
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 8 cut(s) 123, 156, 291, 302, 468, 471, 517, 591
Sau3AI GATC 2 cut(s) 538, 719
Sau96I GGNCC 3 cut(s) 283, 367, 379
SchI GAGTC 2 cut(s) 47, 344
ScrFI CCNGG 3 cut(s) 316, 350, 383
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 2 cut(s) 283, 379
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 552
SsiI CCGC 9 cut(s) 108, 120, 123, 153, 156, 192, 291, 302, 519
SspMI CTAG 2 cut(s) 357, 405
StyD4I CCNGG 3 cut(s) 314, 348, 381
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 2 cut(s) 164, 574
TaqI TCGA 3 cut(s) 51, 90, 722
TasI AATT 1 cut(s) 552
TauI GCSGC 4 cut(s) 125, 158, 293, 304
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 4 cut(s) 467, 470, 516, 590
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 2 cut(s) 283, 379
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 357, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.