RchiOBHm_Chr5g0032761

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008479
Physical Location & Seq
Forward (+)
26503630 .. 26506394
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31192

Sequence Viewer

Length: 714 bp
ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCATGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACACCCACCACCGTCTCCGCCGCCACAACCTCCACCTCCGCCGCCACCTCAACCTCCACCTCCACCGCAAATGGCTTCTTCACCTCACTCTACTCCACCGTCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCACCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTATTGGCGACTACGAGTCCTACTCGTTCCCGGTGTCTAGCTCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTGAAGAGATATGCTAGGAACTATGCGTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAACCTTTAAGCGCTGTGGTGAAATGTGGGGACTGGATCAGTACTCAACAATTCAGCAAACCATAATACGTGTTGCTCAATGTGTAGCTGCTGTTATCCTGATATATTCGGGTGTTCAAATGGCTCTATTCTCGGCACTTAGTGTCACTTATGCAGGAATGATACTGCACGCCGGATTTCGGACGCTGACTCGTGCAAAGCAAGCTTCTCGTGGTAGATCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

237

Amino Acids

26.02

Weight (kDa)

8.85

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 96 - 224 9e-15 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 108, 129, 132, 150, 153, 177, 276, 287
AclWI GGATC 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 530
AfeI AGCGCT 1 cut(s) 500
AfiI CCNNNNNNNGG 3 cut(s) 360, 361, 666
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 1 cut(s) 605
AhdI GACNNNNNGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 256, 345, 575, 692
AluI AGCT 4 cut(s) 256, 345, 575, 692
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 40, 130
AlwI GGATC 1 cut(s) 531
Ama87I CYCGRG 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 500
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 452, 455, 575
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 268, 352, 364
AsuC2I CCSGG 2 cut(s) 301, 335
AsuHPI GGTGA 3 cut(s) 184, 250, 518
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 268, 364
BauI CACGAG 2 cut(s) 678, 696
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 439, 442, 562
BceAI ACGGC 2 cut(s) 88, 274
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 2 cut(s) 301, 335
BcoDI GTCTC 2 cut(s) 40, 130
BfaI CTAG 2 cut(s) 342, 390
BfoI RGCGCY 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 292
BisI GCNGC 7 cut(s) 132, 153, 276, 287, 453, 456, 576
BlsI GCNGC 7 cut(s) 133, 154, 277, 288, 454, 457, 577
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 301, 335, 368
Bme18I GGWCC 2 cut(s) 268, 364
BmeRI GACNNNNNGTC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 3 cut(s) 268, 352, 364
BmiI GGNNCC 2 cut(s) 62, 365
BmrFI CCNGG 3 cut(s) 301, 335, 368
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 349
BplI GAGNNNNNCTC 2 cut(s) 311, 343
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 301, 335
BsaAI YACGTR 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 361, 666
Bse1I ACTGG 2 cut(s) 355, 525
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 3 cut(s) 360, 361, 666
BseMII CTCAG 3 cut(s) 24, 43, 362
BseNI ACTGG 2 cut(s) 355, 525
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 3 cut(s) 439, 442, 562
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 3 cut(s) 300, 335, 660
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 360, 361, 666
BsmAI GTCTC 2 cut(s) 40, 130
BsmBI CGTCTC 2 cut(s) 40, 130
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 523, 704
BspACI CCGC 8 cut(s) 108, 129, 132, 150, 153, 177, 276, 287
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 3 cut(s) 23, 42, 361
BspLI GGNNCC 2 cut(s) 62, 365
BspPI GGATC 1 cut(s) 531
BsrI ACTGG 2 cut(s) 355, 525
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 2 cut(s) 523, 704
BssSI CACGAG 2 cut(s) 678, 696
Bst2BI CACGAG 2 cut(s) 678, 696
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 124, 211
Bst6I CTCTTC 2 cut(s) 236, 374
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 297, 657, 690
BstDEI CTNAG 4 cut(s) 10, 29, 348, 626
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 2 cut(s) 526, 707
BstMAI GTCTC 2 cut(s) 40, 130
BstMBI GATC 2 cut(s) 523, 704
BstMWI GCNNNNNNNGC 2 cut(s) 292, 689
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 299, 333, 366
BstV1I GCAGC 3 cut(s) 439, 442, 562
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 297, 657, 690
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 3 cut(s) 268, 352, 364
CseI GACGC 2 cut(s) 22, 679
Csp6I GTAC 1 cut(s) 529
CviAII CATG 1 cut(s) 57
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 4 cut(s) 10, 29, 348, 626
DpnI GATC 2 cut(s) 525, 706
DpnII GATC 2 cut(s) 523, 704
DraIII CACNNNGTG 1 cut(s) 629
DriI GACNNNNNGTC 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 236, 374
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 2 cut(s) 236, 374
EciI GGCGGA 3 cut(s) 97, 118, 139
Eco47I GGWCC 2 cut(s) 268, 364
Eco47III AGCGCT 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 366
Esp3I CGTCTC 2 cut(s) 40, 130
FaeI CATG 1 cut(s) 60
FaiI YATR 8 cut(s) 58, 387, 399, 436, 484, 551, 592, 639
FaqI GGGAC 1 cut(s) 531
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 7 cut(s) 132, 153, 276, 287, 453, 456, 576
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 7 cut(s) 132, 153, 276, 287, 453, 456, 576
FspBI CTAG 2 cut(s) 342, 390
GlaI GCGC 1 cut(s) 500
GluI GCNGC 7 cut(s) 132, 153, 276, 287, 453, 456, 576
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 1 cut(s) 353
HapII CCGG 3 cut(s) 300, 335, 660
HgaI GACGC 2 cut(s) 22, 679
HhaI GCGC 1 cut(s) 501
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 3 cut(s) 53, 320, 676
HpaII CCGG 3 cut(s) 300, 335, 660
HphI GGTGA 3 cut(s) 184, 250, 518
Hpy188I TCNGA 2 cut(s) 40, 669
Hpy188III TCNNGA 1 cut(s) 586
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 124, 211
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 4 cut(s) 216, 641, 655, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 689
HpyF3I CTNAG 4 cut(s) 10, 29, 348, 626
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 523, 704
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 3 cut(s) 439, 442, 562
LweI GCATC 1 cut(s) 225
MaeI CTAG 2 cut(s) 342, 390
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 631
MalI GATC 2 cut(s) 525, 706
MboI GATC 2 cut(s) 523, 704
MboII GAAGA 6 cut(s) 40, 181, 223, 391, 409, 412
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 537
MlyI GAGTC 3 cut(s) 47, 329, 670
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 1 cut(s) 495
MspI CCGG 3 cut(s) 300, 335, 660
MspR9I CCNGG 3 cut(s) 301, 335, 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 292, 689
NciI CCSGG 2 cut(s) 301, 335
NdeII GATC 2 cut(s) 523, 704
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 2 cut(s) 62, 365
NmeAIII GCCGAG 1 cut(s) 599
NmuCI GTSAC 1 cut(s) 631
PaeR7I CTCGAG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 7 cut(s) 133, 154, 277, 288, 454, 457, 577
PleI GAGTC 3 cut(s) 47, 328, 670
PpsI GAGTC 3 cut(s) 47, 328, 670
Ppu21I YACGTR 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 62, 365
PspPI GGNCC 3 cut(s) 268, 352, 364
PspPPI RGGWCCY 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 89
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 7 cut(s) 132, 153, 276, 287, 453, 456, 576
Sau3AI GATC 2 cut(s) 523, 704
Sau96I GGNCC 3 cut(s) 268, 352, 364
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 3 cut(s) 47, 329, 670
ScrFI CCNGG 3 cut(s) 301, 335, 368
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 2 cut(s) 268, 364
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 537
SsiI CCGC 8 cut(s) 108, 129, 132, 150, 153, 177, 276, 287
SspMI CTAG 2 cut(s) 342, 390
StyD4I CCNGG 3 cut(s) 299, 333, 366
TaaI ACNGT 2 cut(s) 124, 211
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 51, 90, 707
TasI AATT 1 cut(s) 537
TatI WGTACW 1 cut(s) 528
TauI GCSGC 4 cut(s) 134, 155, 278, 289
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 3 cut(s) 452, 455, 575
Tsp45I GTSAC 1 cut(s) 631
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 268, 364
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 342, 390
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.