Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008479

Physical Location & Seq

Genomic Coordinates Reverse (-)

39779840 .. 39780190

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG319400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTCATCATGGTATTCTCAGCCAACCTATTATCCCTCAGCGTCTCCGACCTTTTCTTCGACTCATGGCTCTGTCGAATCGACTACCTTGAAATCCTTGAGCACCGACCTACCTCCACCACACCTACCACCACCTTCGCCGCCATTTCAACCTCCACCTTCACCGCAAATGGGTTCTTCAGCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCGCCACCAACCACTTCACCAAGCTCACCAACGAAGACCTCGCCGCCCCTACGCCGGCGAAGGGGTTGAGGTCCTTGCCGGATCTGGTCCTCGGGTCGAGCGGTGGAGATCAGTCTCATCGAAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

5.37

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27540 AT4G27540
fragaria_vesca	FvH4_3g19520 FvH4_3g19520 FvH4_3g19520
malus_domestica	MD03G1231400.v1.1 MD06G1175000.v1.1
prunus_persica	Prupe.4G176600_v2.0.a1 Prupe.4G176600_v2.0.a1
pyrus_communis	pycom03g17890
rosa_chinensis	RchiOBHm_Chr5g0032761
rosa_laevigata	RLG00000007968 RLG00000033426
rosa_roxburghii	Rroxscaffold_1G00047340 Rroxscaffold_1G00047800 Rroxscaffold_2G00092440
rosa_rugosa	Rorug05G0133500
rosa_samantha	Rh2AG295500 Rh2DG319400 Rh5AG226300 Rh5BG227400 Rh5DG232100
rosa_wichuraiana	Rw5G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	321
AciI	CCGC	4 cut(s)	141, 165, 264, 321
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	171, 274, 281
AgsI	TTSAA	2 cut(s)	92, 150
AluBI	AGCT	3 cut(s)	183, 244, 345
AluI	AGCT	3 cut(s)	183, 244, 345
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	49, 339
AlwI	GGATC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspS9I	GGNCC	2 cut(s)	291, 307
AsuHPI	GGTGA	3 cut(s)	154, 229, 238
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	291, 307
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	49, 339
BisI	GCNGC	2 cut(s)	141, 264
BlsI	GCNGC	2 cut(s)	142, 265
Bme18I	GGWCC	2 cut(s)	291, 307
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	291, 307
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 274, 281
Bse118I	RCCGGY	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	171, 274, 281
BseMII	CTCAG	2 cut(s)	33, 52
BseRI	GAGGAG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	275, 299
BslI	CCNNNNNNNGG	3 cut(s)	171, 274, 281
BsmAI	GTCTC	2 cut(s)	49, 339
BsmBI	CGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	301, 328
BspACI	CCGC	4 cut(s)	141, 165, 264, 321
BspCNI	CTCAG	2 cut(s)	32, 51
BspPI	GGATC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	301, 328
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	19, 38
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	304, 331
BstMAI	GTCTC	2 cut(s)	49, 339
BstMBI	GATC	2 cut(s)	301, 328
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	291, 307
CseI	GACGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	10, 66
CviJI	RGCY	5 cut(s)	23, 70, 183, 244, 345
CviKI_1	RGCY	5 cut(s)	23, 70, 183, 244, 345
DdeI	CTNAG	2 cut(s)	19, 38
DpnI	GATC	2 cut(s)	303, 330
DpnII	GATC	2 cut(s)	301, 328
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	291, 307
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	2 cut(s)	13, 69
FaiI	YATR	2 cut(s)	11, 67
FatI	CATG	2 cut(s)	9, 65
Fnu4HI	GCNGC	2 cut(s)	141, 264
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	141, 264
GluI	GCNGC	2 cut(s)	141, 264
HapII	CCGG	2 cut(s)	275, 299
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	13, 69
HinfI	GANTC	2 cut(s)	62, 78
HpaII	CCGG	2 cut(s)	275, 299
HphI	GGTGA	3 cut(s)	154, 229, 238
Hpy188I	TCNGA	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	145, 169, 274
HpyCH4V	TGCA	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	19, 38
Hsp92II	CATG	2 cut(s)	13, 69
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	301, 328
LpnPI	CCDG	4 cut(s)	288, 290, 312, 331
LweI	GCATC	1 cut(s)	213
MalI	GATC	2 cut(s)	303, 330
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	2 cut(s)	301, 328
MboII	GAAGA	4 cut(s)	49, 169, 211, 266
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	47, 124, 163, 218, 221, 269, 282, 320
MreI	CGCCGGCG	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	274
MspI	CCGG	2 cut(s)	275, 299
NaeI	GCCGGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	301, 328
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	13, 69
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	142, 265
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	291, 307
PspPPI	RGGWCCY	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	301
SatI	GCNGC	2 cut(s)	141, 264
Sau3AI	GATC	2 cut(s)	301, 328
Sau96I	GGNCC	2 cut(s)	291, 307
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	213
SgrAI	CRCCGGYG	1 cut(s)	274
SinI	GGWCC	2 cut(s)	291, 307
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	4 cut(s)	141, 165, 264, 321
TaqI	TCGA	5 cut(s)	60, 76, 81, 317, 340
TauI	GCSGC	2 cut(s)	143, 266
TfiI	GAWTC	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	291, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.