Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008479

Physical Location & Seq

Genomic Coordinates Reverse (-)

18964211 .. 18968073

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17890.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATATATTTTATATTAAGAGAGAGAAGAGTTCAGGAAATACTATTATCTTCTCAACGAAACAAAACCAACATAACATCATCAACACAAAAATCCCAAAATCCAAGGGCAAACCAAAAAGTTGCAGGCAGGACTCGGGAGGGAATTACCATGGTATTCACCTCCAACCCTTTATCTCTCAGCGTCCCCGACCCTTTCTTCGAGTCATGGCTCCGCGACAATGGCTACCCAGAAATCATCGACCAGCACACCTCCACCGCCATCACCACCTCCTCCGCCGCCACCGCTGACGCAGCCTCCATCACAAACGGCTTCTTCATCTCACTCTTCTCTCGCATTTTCACCCTTTTCTCTCTCTTCACCATTAACCCCTTCTCCAAGCTCACCAACGACGACCTTGCCGCCCAGACACCGCCGTGGACCACCGCCTTTTTTGGGTCCTCCGAATCCTACTCTTTCCCTCTCTCTGTTTCGCAGGCTCGCATGAGGGTCCAGGAGAATGTCAAGCGCTATTCTAGAAATTATGCTACTTTGTTCGTGCTCTTCTTTGCTTGCTCTTTATATCAGATGCCACTGGCTCTTGTTGGATTGATATCTTGTTTGGCACTATGGGATGTTTTTAAGTTCTGTAGTGAAAGATGGGGACTGGACCAATACCCAATAGTTCGGCAGTGCTTAATTCGTTTTGCTCAATGTGTAGCTGCGGTTATTCTGATATGTTCAAATGTTCAAATGGCTATCTTCTGTGCTCTTACTGTCAGTTATGCAGGCATGATTCTGCATGCTGGATTTCGGAAGCTGACTAGTGCAAAGCAAGCTCCTCGTGGTCGATCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

280

Amino Acids

31.37

Weight (kDa)

9.65

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27540 AT4G27540
fragaria_vesca	FvH4_3g19520 FvH4_3g19520 FvH4_3g19520
malus_domestica	MD03G1231400.v1.1 MD06G1175000.v1.1
prunus_persica	Prupe.4G176600_v2.0.a1 Prupe.4G176600_v2.0.a1
pyrus_communis	pycom03g17890
rosa_chinensis	RchiOBHm_Chr5g0032761
rosa_laevigata	RLG00000007968 RLG00000033426
rosa_roxburghii	Rroxscaffold_1G00047340 Rroxscaffold_1G00047800 Rroxscaffold_2G00092440
rosa_rugosa	Rorug05G0133500
rosa_samantha	Rh2AG295500 Rh2DG319400 Rh5AG226300 Rh5BG227400 Rh5DG232100
rosa_wichuraiana	Rw5G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AciI	CCGC	9 cut(s)	214, 258, 276, 279, 285, 402, 413, 426, 704
AclWI	GGATC	1 cut(s)	825
AfeI	AGCGCT	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	723, 731
AhlI	ACTAGT	1 cut(s)	803
AjnI	CCWGG	1 cut(s)	492
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	4 cut(s)	382, 701, 799, 818
AluI	AGCT	4 cut(s)	382, 701, 799, 818
Alw21I	GWGCWC	2 cut(s)	543, 751
AlwI	GGATC	1 cut(s)	825
Ama87I	CYCGRG	1 cut(s)	135
Aor51HI	AGCGCT	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	293, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	4 cut(s)	420, 438, 490, 649
AsuHPI	GGTGA	5 cut(s)	151, 256, 334, 352, 376
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	4 cut(s)	420, 438, 490, 649
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	543, 751
BbvI	GCAGC	2 cut(s)	305, 688
BccI	CCATC	3 cut(s)	269, 308, 633
BceAI	ACGGC	2 cut(s)	325, 400
BcgI	CGANNNNNNTGC	4 cut(s)	380, 414, 803, 837
BciT130I	CCWGG	1 cut(s)	494
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	2 cut(s)	516, 804
BfmI	CTRYAG	1 cut(s)	628
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	4 cut(s)	279, 294, 402, 702
BlsI	GCNGC	4 cut(s)	280, 295, 403, 703
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	4 cut(s)	420, 438, 490, 649
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	4 cut(s)	420, 438, 490, 649
BmiI	GGNNCC	3 cut(s)	212, 439, 491
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	104, 150, 416
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	2 cut(s)	579, 651
Bse8I	GATNNNNATC	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	104, 150, 416
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	592
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	579, 651
BseRI	GAGGAG	2 cut(s)	262, 810
BseXI	GCAGC	2 cut(s)	305, 688
Bsh1236I	CGCG	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	543, 751
BsiHKCI	CYCGRG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	170, 657
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	170, 657
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	543, 751
Bsp143I	GATC	1 cut(s)	830
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	9 cut(s)	214, 258, 276, 279, 285, 402, 413, 426, 704
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	212, 439, 491
BspPI	GGATC	1 cut(s)	825
BspQI	GCTCTTC	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	579, 651
BssECI	CCNNGG	3 cut(s)	104, 150, 416
BssMI	GATC	1 cut(s)	830
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	2 cut(s)	104, 150
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	4 cut(s)	22, 332, 362, 548
BstC8I	GCNNGC	7 cut(s)	127, 477, 481, 553, 769, 783, 816
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	2 cut(s)	150, 416
BstF5I	GGATG	1 cut(s)	619
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	830
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 284, 293, 815
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	628
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	305, 688
BtgI	CCRYGG	2 cut(s)	150, 416
BtsCI	GGATG	1 cut(s)	619
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	2 cut(s)	572, 677
Cac8I	GCNNGC	7 cut(s)	127, 477, 481, 553, 769, 783, 816
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	4 cut(s)	420, 438, 490, 649
CseI	GACGC	2 cut(s)	172, 299
CviAII	CATG	5 cut(s)	151, 207, 484, 772, 782
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	832
DpnII	GATC	1 cut(s)	830
Eam1104I	CTCTTC	4 cut(s)	22, 332, 362, 548
EarI	CTCTTC	4 cut(s)	22, 332, 362, 548
EciI	GGCGGA	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	104, 150
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	4 cut(s)	420, 438, 490, 649
Eco47III	AGCGCT	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	104, 150
ErhI	CCWWGG	2 cut(s)	104, 150
FaeI	CATG	5 cut(s)	154, 210, 487, 775, 785
FaqI	GGGAC	2 cut(s)	170, 657
FatI	CATG	5 cut(s)	150, 206, 483, 771, 781
Fnu4HI	GCNGC	4 cut(s)	279, 294, 402, 702
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	4 cut(s)	279, 294, 402, 702
FspBI	CTAG	2 cut(s)	516, 804
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	279, 294, 402, 702
HaeII	RGCGCY	1 cut(s)	511
HgaI	GACGC	2 cut(s)	172, 299
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	5 cut(s)	154, 210, 487, 775, 785
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	4 cut(s)	133, 203, 446, 775
HphI	GGTGA	5 cut(s)	151, 256, 334, 352, 376
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	445, 567, 714, 795
Hpy188III	TCNNGA	3 cut(s)	35, 137, 516
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4V	TGCA	4 cut(s)	125, 767, 781, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 284, 293, 815
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	5 cut(s)	154, 210, 487, 775, 785
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	830
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	2 cut(s)	216, 823
Lsp1109I	GCAGC	2 cut(s)	305, 688
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	2 cut(s)	516, 804
MalI	GATC	1 cut(s)	832
MboI	GATC	1 cut(s)	830
MboII	GAAGA	8 cut(s)	39, 42, 190, 307, 319, 349, 535, 733
MhlI	GDGCHC	2 cut(s)	543, 751
MluCI	AATT	3 cut(s)	144, 520, 678
MlyI	GAGTC	2 cut(s)	127, 212
MmeI	TCCRAC	2 cut(s)	189, 565
MseI	TTAA	4 cut(s)	17, 366, 621, 677
MslI	CAYNNNNRTG	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	222, 284, 293, 815
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	830
NlaIII	CATG	5 cut(s)	154, 210, 487, 775, 785
NlaIV	GGNNCC	3 cut(s)	212, 439, 491
NspI	RCATGY	1 cut(s)	785
OliI	CACNNNNGTG	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	446, 775
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	4 cut(s)	280, 295, 403, 703
PleI	GAGTC	2 cut(s)	127, 211
PpsI	GAGTC	2 cut(s)	127, 211
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	3 cut(s)	212, 439, 491
PspPI	GGNCC	4 cut(s)	420, 438, 490, 649
PspPPI	RGGWCCY	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	4 cut(s)	17, 366, 621, 677
SatI	GCNGC	4 cut(s)	279, 294, 402, 702
Sau3AI	GATC	1 cut(s)	830
Sau96I	GGNCC	4 cut(s)	420, 438, 490, 649
SchI	GAGTC	2 cut(s)	127, 212
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	543, 751
SetI	ASST	8 cut(s)	164, 254, 272, 384, 399, 703, 801, 820
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	628
SinI	GGWCC	4 cut(s)	420, 438, 490, 649
SmiMI	CAYNNNNRTG	1 cut(s)	415
SpeI	ACTAGT	1 cut(s)	803
SphI	GCATGC	1 cut(s)	785
Sse9I	AATT	3 cut(s)	144, 520, 678
SsiI	CCGC	9 cut(s)	214, 258, 276, 279, 285, 402, 413, 426, 704
SspMI	CTAG	2 cut(s)	516, 804
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	104, 150
TaaI	ACNGT	1 cut(s)	757
TaqI	TCGA	3 cut(s)	201, 240, 829
TasI	AATT	3 cut(s)	144, 520, 678
TauI	GCSGC	2 cut(s)	281, 404
TfiI	GAWTC	2 cut(s)	446, 775
Tru1I	TTAA	4 cut(s)	17, 366, 621, 677
Tru9I	TTAA	4 cut(s)	17, 366, 621, 677
TscAI	CASTG	2 cut(s)	579, 677
TseI	GCWGC	2 cut(s)	293, 701
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	579, 677
VpaK11BI	GGWCC	4 cut(s)	420, 438, 490, 649
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	1 cut(s)	785
XspI	CTAG	2 cut(s)	516, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.