RLG00000033426

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008479
Physical Location & Seq
Forward (+)
26995320 .. 26997718
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033426

Sequence Viewer

Length: 720 bp
ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCGTGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACACCCACCACCGTCTCCGCCGCCACAACCTCCACCTCCGCCGCCACCTCAACCTCCACCTCCACCTCCACCGCTAATGGGTTCTTCACCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCACCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTATTGGCGACTACGAGTCCTACTCGTTCCCGGTGTCTAGCTCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTGAAGAGATATGCTAGGAACTATGCCTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAATCTTTAAGCGCTGCAGTGAAATGTGGGGACTGGATCAATACCCAACAATTCAGCAAACCATAATTCGTGTTGCTCAATGTGTAGCTGCTGTTATCCTGATATATTCGGGTGTTCAAATGGCGCTATTCTCGACACTTAGTGTCACTTATGCAGGAATGATACTGCACGCCGGATTTCGGACGCTGACTCGTGCAAAGCAAGCTTCTCGTGGTAGATCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

240

Amino Acids

26.3

Weight (kDa)

8.85

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 98 - 226 9.8e-15 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 108, 129, 132, 150, 153, 183, 282, 293
AclWI GGATC 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 635
AfeI AGCGCT 1 cut(s) 506
AfiI CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
AgsI TTSAA 1 cut(s) 611
AhdI GACNNNNNGTC 1 cut(s) 325
AjnI CCWGG 2 cut(s) 372, 407
AluBI AGCT 4 cut(s) 262, 351, 581, 698
AluI AGCT 4 cut(s) 262, 351, 581, 698
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 40, 130
AlwI GGATC 1 cut(s) 537
Ama87I CYCGRG 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 506
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 458, 461, 507, 581
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 2 cut(s) 507, 619
AspS9I GGNCC 3 cut(s) 274, 358, 370
AsuC2I CCSGG 2 cut(s) 307, 341
AsuHPI GGTGA 2 cut(s) 190, 256
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 274, 370
BauI CACGAG 3 cut(s) 55, 684, 702
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 29
BbvI GCAGC 4 cut(s) 445, 448, 494, 568
BccI CCATC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 88, 280
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 2 cut(s) 374, 409
BcnI CCSGG 2 cut(s) 307, 341
BcoDI GTCTC 2 cut(s) 40, 130
BfaI CTAG 2 cut(s) 348, 396
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 2 cut(s) 508, 620
BglI GCCNNNNNGGC 1 cut(s) 298
BisI GCNGC 8 cut(s) 132, 153, 282, 293, 459, 462, 508, 582
BlsI GCNGC 8 cut(s) 133, 154, 283, 294, 460, 463, 509, 583
Bme1390I CCNGG 4 cut(s) 307, 341, 374, 409
Bme18I GGWCC 2 cut(s) 274, 370
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 3 cut(s) 274, 358, 370
BmiI GGNNCC 2 cut(s) 62, 371
BmrFI CCNGG 4 cut(s) 307, 341, 374, 409
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 231
BmuI ACTGGG 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 307, 341
BsaJI CCNNGG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
Bse1I ACTGG 2 cut(s) 361, 531
BseBI CCWGG 2 cut(s) 374, 409
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
BseMII CTCAG 3 cut(s) 24, 43, 368
BseNI ACTGG 2 cut(s) 361, 531
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 4 cut(s) 445, 448, 494, 568
BsgI GTGCAG 1 cut(s) 644
BshFI GGCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 3 cut(s) 306, 341, 666
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 4 cut(s) 189, 366, 367, 672
BsmAI GTCTC 2 cut(s) 40, 130
BsmBI CGTCTC 2 cut(s) 40, 130
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 529, 710
BspACI CCGC 8 cut(s) 108, 129, 132, 150, 153, 183, 282, 293
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 23, 42, 367
BspLI GGNNCC 2 cut(s) 62, 371
BspMAI CTGCAG 1 cut(s) 512
BspPI GGATC 1 cut(s) 537
BsrI ACTGG 2 cut(s) 361, 531
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 2 cut(s) 529, 710
BssSI CACGAG 3 cut(s) 55, 684, 702
Bst2BI CACGAG 3 cut(s) 55, 684, 702
Bst2UI CCWGG 2 cut(s) 374, 409
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 242, 380
BstC8I GCNNGC 3 cut(s) 303, 663, 696
BstDEI CTNAG 4 cut(s) 10, 29, 354, 632
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 2 cut(s) 508, 620
BstHHI GCGC 2 cut(s) 507, 619
BstKTI GATC 2 cut(s) 532, 713
BstMAI GTCTC 2 cut(s) 40, 130
BstMBI GATC 2 cut(s) 529, 710
BstMWI GCNNNNNNNGC 2 cut(s) 298, 695
BstNI CCWGG 2 cut(s) 374, 409
BstSCI CCNGG 4 cut(s) 305, 339, 372, 407
BstSFI CTRYAG 1 cut(s) 508
BstV1I GCAGC 4 cut(s) 445, 448, 494, 568
BsuRI GGCC 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 303, 663, 696
CfoI GCGC 2 cut(s) 507, 619
Cfr13I GGNCC 3 cut(s) 274, 358, 370
CseI GACGC 2 cut(s) 22, 685
DdeI CTNAG 4 cut(s) 10, 29, 354, 632
DpnI GATC 2 cut(s) 531, 712
DpnII GATC 2 cut(s) 529, 710
DraIII CACNNNGTG 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 242, 380
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 2 cut(s) 242, 380
EciI GGCGGA 3 cut(s) 97, 118, 139
Eco47I GGWCC 2 cut(s) 274, 370
Eco47III AGCGCT 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 372, 407
Esp3I CGTCTC 2 cut(s) 40, 130
FaiI YATR 7 cut(s) 393, 405, 442, 490, 557, 598, 645
FaqI GGGAC 1 cut(s) 537
Fnu4HI GCNGC 8 cut(s) 132, 153, 282, 293, 459, 462, 508, 582
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 8 cut(s) 132, 153, 282, 293, 459, 462, 508, 582
FspBI CTAG 2 cut(s) 348, 396
GlaI GCGC 2 cut(s) 506, 618
GluI GCNGC 8 cut(s) 132, 153, 282, 293, 459, 462, 508, 582
HaeII RGCGCY 2 cut(s) 508, 620
HaeIII GGCC 1 cut(s) 359
HapII CCGG 3 cut(s) 306, 341, 666
HgaI GACGC 2 cut(s) 22, 685
HhaI GCGC 2 cut(s) 507, 619
Hin6I GCGC 2 cut(s) 505, 617
HinP1I GCGC 2 cut(s) 505, 617
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 3 cut(s) 53, 326, 682
HpaII CCGG 3 cut(s) 306, 341, 666
HphI GGTGA 2 cut(s) 190, 256
Hpy188I TCNGA 2 cut(s) 40, 675
Hpy188III TCNNGA 3 cut(s) 592, 625, 714
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 5 cut(s) 222, 510, 647, 661, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 695
HpyF3I CTNAG 4 cut(s) 10, 29, 354, 632
HspAI GCGC 2 cut(s) 505, 617
Kzo9I GATC 2 cut(s) 529, 710
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 4 cut(s) 445, 448, 494, 568
LweI GCATC 1 cut(s) 231
MaeI CTAG 2 cut(s) 348, 396
MaeIII GTNAC 1 cut(s) 637
MalI GATC 2 cut(s) 531, 712
MboI GATC 2 cut(s) 529, 710
MboII GAAGA 6 cut(s) 40, 187, 229, 397, 415, 418
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 543, 558
MlyI GAGTC 3 cut(s) 47, 335, 676
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 1 cut(s) 501
MspI CCGG 3 cut(s) 306, 341, 666
MspR9I CCNGG 4 cut(s) 307, 341, 374, 409
MvaI CCWGG 2 cut(s) 374, 409
MwoI GCNNNNNNNGC 2 cut(s) 298, 695
NciI CCSGG 2 cut(s) 307, 341
NdeII GATC 2 cut(s) 529, 710
NlaIV GGNNCC 2 cut(s) 62, 371
NmuCI GTSAC 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 8 cut(s) 133, 154, 283, 294, 460, 463, 509, 583
PleI GAGTC 3 cut(s) 47, 334, 676
PpsI GAGTC 3 cut(s) 47, 334, 676
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 372, 407
PspGI CCWGG 2 cut(s) 372, 407
PspN4I GGNNCC 2 cut(s) 62, 371
PspPI GGNCC 3 cut(s) 274, 358, 370
PspPPI RGGWCCY 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 89
PstI CTGCAG 1 cut(s) 512
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 8 cut(s) 132, 153, 282, 293, 459, 462, 508, 582
Sau3AI GATC 2 cut(s) 529, 710
Sau96I GGNCC 3 cut(s) 274, 358, 370
SchI GAGTC 3 cut(s) 47, 335, 676
ScrFI CCNGG 4 cut(s) 307, 341, 374, 409
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 508
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 2 cut(s) 274, 370
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 543, 558
SsiI CCGC 8 cut(s) 108, 129, 132, 150, 153, 183, 282, 293
SspMI CTAG 2 cut(s) 348, 396
StyD4I CCNGG 4 cut(s) 305, 339, 372, 407
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 4 cut(s) 51, 90, 626, 713
TasI AATT 2 cut(s) 543, 558
TauI GCSGC 4 cut(s) 134, 155, 284, 295
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 4 cut(s) 458, 461, 507, 581
Tsp45I GTSAC 1 cut(s) 637
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 274, 370
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 348, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.