Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008479

Physical Location & Seq

Genomic Coordinates Forward (+)

26468704 .. 26471861

Gene Structure 3158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG232100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCATGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACACCCACCACCGTCTCCGCCGCCACAACCTCCACCTCCGTCGGCACCTCAACCTCCACCTCCGTCTCCACCGCAAACGGGTTCTTCACCTCACTCTACTCCTCCGTCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCAGCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTATTGGCGACTACGAGTCCTACTCGTTCCCGGTGTCTAGCTCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTGAAGAGATATGCTAGGAGCTATGCGTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAATCTTTAAGCGCTGCGGTGAAATGTGGGGACTGGATCAGTACCCAACAATTCAGCAAACCATAATACGTGTTGCTCAATGTGGTGAGACATCGACTCTTTCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

200

Amino Acids

21.94

Weight (kDa)

5.04

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	98 - 165	2.2e-07	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27540 AT4G27540
fragaria_vesca	FvH4_3g19520 FvH4_3g19520 FvH4_3g19520
malus_domestica	MD03G1231400.v1.1 MD06G1175000.v1.1
prunus_persica	Prupe.4G176600_v2.0.a1 Prupe.4G176600_v2.0.a1
pyrus_communis	pycom03g17890
rosa_chinensis	RchiOBHm_Chr5g0032761
rosa_laevigata	RLG00000007968 RLG00000033426
rosa_roxburghii	Rroxscaffold_1G00047340 Rroxscaffold_1G00047800 Rroxscaffold_2G00092440
rosa_rugosa	Rorug05G0133500
rosa_samantha	Rh2AG295500 Rh2DG319400 Rh5AG226300 Rh5BG227400 Rh5DG232100
rosa_wichuraiana	Rw5G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	7 cut(s)	108, 129, 132, 183, 282, 293, 510
AclWI	GGATC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	536
AfeI	AGCGCT	1 cut(s)	506
AfiI	CCNNNNNNNGG	3 cut(s)	189, 366, 367
AflIII	ACRYGT	1 cut(s)	562
AhdI	GACNNNNNGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	3 cut(s)	262, 351, 402
AluI	AGCT	3 cut(s)	262, 351, 402
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	4 cut(s)	40, 130, 181, 575
AlwI	GGATC	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	506
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	3 cut(s)	458, 461, 507
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	3 cut(s)	274, 358, 370
AsuC2I	CCSGG	2 cut(s)	307, 341
AsuHPI	GGTGA	3 cut(s)	190, 524, 590
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	274, 370
BanI	GGYRCC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	445, 448, 494
BceAI	ACGGC	2 cut(s)	88, 280
BciT130I	CCWGG	1 cut(s)	374
BcnI	CCSGG	2 cut(s)	307, 341
BcoDI	GTCTC	4 cut(s)	40, 130, 181, 575
BfaI	CTAG	2 cut(s)	348, 396
BfoI	RGCGCY	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	298
BisI	GCNGC	6 cut(s)	132, 282, 293, 459, 462, 508
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	6 cut(s)	133, 283, 294, 460, 463, 509
Bme1390I	CCNGG	3 cut(s)	307, 341, 374
Bme18I	GGWCC	2 cut(s)	274, 370
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	274, 358, 370
BmiI	GGNNCC	3 cut(s)	62, 157, 371
BmrFI	CCNGG	3 cut(s)	307, 341, 374
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	307, 341
BsaAI	YACGTR	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 366, 367
Bse1I	ACTGG	2 cut(s)	361, 531
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	189, 366, 367
BseMII	CTCAG	4 cut(s)	24, 43, 277, 368
BseNI	ACTGG	2 cut(s)	361, 531
BseRI	GAGGAG	2 cut(s)	202, 218
BseXI	GCAGC	3 cut(s)	445, 448, 494
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	306, 341
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	3 cut(s)	189, 366, 367
BsmAI	GTCTC	4 cut(s)	40, 130, 181, 575
BsmBI	CGTCTC	3 cut(s)	40, 130, 181
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	529
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	7 cut(s)	108, 129, 132, 183, 282, 293, 510
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	4 cut(s)	23, 42, 276, 367
BspLI	GGNNCC	3 cut(s)	62, 157, 371
BspPI	GGATC	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	361, 531
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	242, 380
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	4 cut(s)	10, 29, 263, 354
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	4 cut(s)	40, 130, 181, 575
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	3 cut(s)	305, 339, 372
BstV1I	GCAGC	3 cut(s)	445, 448, 494
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	3 cut(s)	274, 358, 370
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	9 cut(s)	14, 61, 75, 262, 305, 351, 359, 402, 458
CviKI_1	RGCY	9 cut(s)	14, 61, 75, 262, 305, 351, 359, 402, 458
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	4 cut(s)	10, 29, 263, 354
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
DriI	GACNNNNNGTC	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	242, 380
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	2 cut(s)	242, 380
EciI	GGCGGA	2 cut(s)	97, 118
Eco47I	GGWCC	2 cut(s)	274, 370
Eco47III	AGCGCT	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	372
Esp3I	CGTCTC	3 cut(s)	40, 130, 181
FaeI	CATG	1 cut(s)	60
FaiI	YATR	6 cut(s)	58, 393, 405, 442, 490, 557
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	6 cut(s)	132, 282, 293, 459, 462, 508
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	6 cut(s)	132, 282, 293, 459, 462, 508
FspBI	CTAG	2 cut(s)	348, 396
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	6 cut(s)	132, 282, 293, 459, 462, 508
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	306, 341
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	3 cut(s)	53, 326, 589
HpaII	CCGG	2 cut(s)	306, 341
HphI	GGTGA	3 cut(s)	190, 524, 590
Hpy188I	TCNGA	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	4 cut(s)	10, 29, 263, 354
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	2 cut(s)	66, 399
LpnPI	CCDG	9 cut(s)	93, 319, 341, 354, 359, 374, 386, 450, 512
Lsp1109I	GCAGC	3 cut(s)	445, 448, 494
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	348, 396
MaeII	ACGT	1 cut(s)	562
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	6 cut(s)	40, 187, 229, 397, 415, 418
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	543
MlyI	GAGTC	3 cut(s)	47, 335, 583
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	501
MspI	CCGG	2 cut(s)	306, 341
MspR9I	CCNGG	3 cut(s)	307, 341, 374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	2 cut(s)	307, 341
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	3 cut(s)	62, 157, 371
PaeR7I	CTCGAG	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	6 cut(s)	133, 283, 294, 460, 463, 509
PleI	GAGTC	3 cut(s)	47, 334, 583
PpsI	GAGTC	3 cut(s)	47, 334, 583
Ppu21I	YACGTR	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	3 cut(s)	62, 157, 371
PspPI	GGNCC	3 cut(s)	274, 358, 370
PspPPI	RGGWCCY	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	89
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	132, 282, 293, 459, 462, 508
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	3 cut(s)	274, 358, 370
SchI	GAGTC	3 cut(s)	47, 335, 583
ScrFI	CCNGG	3 cut(s)	307, 341, 374
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	274, 370
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	7 cut(s)	108, 129, 132, 183, 282, 293, 510
SspMI	CTAG	2 cut(s)	348, 396
StyD4I	CCNGG	3 cut(s)	305, 339, 372
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	51, 90, 587
TasI	AATT	1 cut(s)	543
TauI	GCSGC	3 cut(s)	134, 284, 295
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	3 cut(s)	458, 461, 507
TspGWI	ACGGA	4 cut(s)	53, 139, 163, 205
VpaK11BI	GGWCC	2 cut(s)	274, 370
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	2 cut(s)	348, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.