Rroxscaffold_2G00092440

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008479
Physical Location & Seq
Reverse (-)
13965845 .. 13966123
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092440.1

Sequence Viewer

Length: 279 bp
ATGGTATTCTCGGCCAACCCAAGATCCCTCGGCGTCTCCGACCTTTTCTTCGACTCATGGCTCTGTCAAAACGACTACCGTGAAATCCTCGAGCATCGACCCACCTCCACCACACCCGCCACCGCCTCCGCCTCCATTTCAACCTCCACCTTCACCGCAAATGGGTTCTTCAGCTCACTCTACTCCACCATCTGCATCCTCCTCTCTCTCTTCACCACCAACCACTTCGCCAAGCTCACCAACGAAGACCTCGCCGCCCCGCGCCGGCGGAGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

92

Amino Acids

10.24

Weight (kDa)

7.85

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 7 cut(s) 117, 123, 129, 156, 255, 260, 268
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 162, 264, 271
AgsI TTSAA 1 cut(s) 141
AluBI AGCT 2 cut(s) 174, 235
AluI AGCT 2 cut(s) 174, 235
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 12
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 3 cut(s) 145, 205, 229
AvaI CYCGRG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 252
BccI CCATC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 40
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 89
BmsI GCATC 2 cut(s) 103, 204
BpiI GAAGAC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 264, 271
Bse118I RCCGGY 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 3 cut(s) 162, 264, 271
BseRI GAGGAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 162, 264, 271
BsmAI GTCTC 1 cut(s) 40
BsmBI CGTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 7 cut(s) 117, 123, 129, 156, 255, 260, 268
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 262
BspPI GGATC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 23
BstUI CGCG 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 264
CseI GACGC 1 cut(s) 22
CviAII CATG 1 cut(s) 57
CviJI RGCY 4 cut(s) 14, 61, 174, 235
CviKI_1 RGCY 4 cut(s) 14, 61, 174, 235
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 60
FaiI YATR 1 cut(s) 58
FatI CATG 1 cut(s) 56
FauI CCCGC 2 cut(s) 124, 267
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 255
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 265
HphI GGTGA 3 cut(s) 145, 205, 229
Hpy188I TCNGA 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 264
KroNI GCCGGC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 23
LweI GCATC 2 cut(s) 103, 204
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 4 cut(s) 40, 160, 202, 257
MflI RGATCY 1 cut(s) 23
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 63
MreI CGCCGGCG 1 cut(s) 264
MroNI GCCGGC 1 cut(s) 264
MspI CCGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 262
NaeI GCCGGC 1 cut(s) 266
NdeII GATC 1 cut(s) 23
NgoMIV GCCGGC 1 cut(s) 264
NlaIII CATG 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspXI VCTCGAGB 1 cut(s) 89
PsuI RGATCY 1 cut(s) 23
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 23
SchI GAGTC 1 cut(s) 47
SetI ASST 7 cut(s) 45, 107, 146, 152, 176, 237, 252
SfaNI GCATC 2 cut(s) 103, 204
Sfr274I CTCGAG 1 cut(s) 89
SgrAI CRCCGGYG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 7 cut(s) 117, 123, 129, 156, 255, 260, 268
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 51, 90, 97
TauI GCSGC 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.