Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008479

Physical Location & Seq

Genomic Coordinates Forward (+)

27069955 .. 27072869

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTATTCTCAGCCAACCCATTATCCCTCAGCGTCTCCGACCCTTTCTTCGACTCATGGCTCCGTCAAAACGGCTACCCTGAAATCCTCGAGCACCGACCCACCTCCGCCACACCCACCACCGTCTCCGCCGCCACAACCTCCACCTCCGCCGCCACCTCAACCTCCACCTCCACCGCAAATGGCTTCTTCACCTCACTCTACTCCACCGTCTGCATCCTCCTCTCTCTCTTCGCCACCAACCCCTTCGCCAAGCTCACCAACGAGGACCTCGCCGCCCCTACGCCGCCGTGGCAAGCCGGGTTTATTGGCGACTACGAGTCCTACTCGTTCCCGGTGTCTAGCTCTCAGGCCCAGTTGAGGGTCCAGGAGAATGTGAAGAGATATGCTAGGAACTATGCGTGGTTGTTGGTCATCTTCTTCGCTTGTTCTCTATATCAAATGCCATTGGCTGCTGCTGGATTGATATTTTGTTTGGCACTATGGGAAACCTTTAAGCGCTGTGGTGAAATGTGGGGACTGGATCAGTACTCAACAATTCAGCAAACCATAATACGTGTTGCTCAATGTGGTGAGATATCGACTCTTTCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

198

Amino Acids

21.78

Weight (kDa)

5.04

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	96 - 163	3.4e-09	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27540 AT4G27540
fragaria_vesca	FvH4_3g19520 FvH4_3g19520 FvH4_3g19520
malus_domestica	MD03G1231400.v1.1 MD06G1175000.v1.1
prunus_persica	Prupe.4G176600_v2.0.a1 Prupe.4G176600_v2.0.a1
pyrus_communis	pycom03g17890
rosa_chinensis	RchiOBHm_Chr5g0032761
rosa_laevigata	RLG00000007968 RLG00000033426
rosa_roxburghii	Rroxscaffold_1G00047340 Rroxscaffold_1G00047800 Rroxscaffold_2G00092440
rosa_rugosa	Rorug05G0133500
rosa_samantha	Rh2AG295500 Rh2DG319400 Rh5AG226300 Rh5BG227400 Rh5DG232100
rosa_wichuraiana	Rw5G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	108, 129, 132, 150, 153, 177, 276, 287
AclWI	GGATC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	530
AfeI	AGCGCT	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	360, 361
AflIII	ACRYGT	1 cut(s)	556
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	256, 345
AluI	AGCT	2 cut(s)	256, 345
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	40, 130
AlwI	GGATC	1 cut(s)	531
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	500
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	452, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	3 cut(s)	268, 352, 364
AsuC2I	CCSGG	2 cut(s)	301, 335
AsuHPI	GGTGA	4 cut(s)	184, 250, 518, 584
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	268, 364
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	439, 442
BceAI	ACGGC	2 cut(s)	88, 274
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	2 cut(s)	301, 335
BcoDI	GTCTC	2 cut(s)	40, 130
BfaI	CTAG	2 cut(s)	342, 390
BfoI	RGCGCY	1 cut(s)	502
BglI	GCCNNNNNGGC	1 cut(s)	292
BisI	GCNGC	6 cut(s)	132, 153, 276, 287, 453, 456
BlsI	GCNGC	6 cut(s)	133, 154, 277, 288, 454, 457
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	3 cut(s)	301, 335, 368
Bme18I	GGWCC	2 cut(s)	268, 364
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	268, 352, 364
BmiI	GGNNCC	2 cut(s)	62, 365
BmrFI	CCNGG	3 cut(s)	301, 335, 368
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
Bpu10I	CCTNAGC	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	301, 335
BsaAI	YACGTR	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 361
Bse1I	ACTGG	2 cut(s)	355, 525
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	360, 361
BseMII	CTCAG	3 cut(s)	24, 43, 362
BseNI	ACTGG	2 cut(s)	355, 525
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	439, 442
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	300, 335
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	360, 361
BsmAI	GTCTC	2 cut(s)	40, 130
BsmBI	CGTCTC	2 cut(s)	40, 130
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	8 cut(s)	108, 129, 132, 150, 153, 177, 276, 287
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	3 cut(s)	23, 42, 361
BspLI	GGNNCC	2 cut(s)	62, 365
BspPI	GGATC	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	355, 525
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	124, 211
Bst6I	CTCTTC	2 cut(s)	236, 374
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	10, 29, 348
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	2 cut(s)	40, 130
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	299, 333, 366
BstV1I	GCAGC	2 cut(s)	439, 442
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	3 cut(s)	268, 352, 364
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	9 cut(s)	14, 61, 75, 186, 256, 299, 345, 353, 452
CviKI_1	RGCY	9 cut(s)	14, 61, 75, 186, 256, 299, 345, 353, 452
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	3 cut(s)	10, 29, 348
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	236, 374
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	2 cut(s)	236, 374
EciI	GGCGGA	3 cut(s)	97, 118, 139
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	268, 364
Eco47III	AGCGCT	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	579
Esp3I	CGTCTC	2 cut(s)	40, 130
FaeI	CATG	1 cut(s)	60
FaiI	YATR	6 cut(s)	58, 387, 399, 436, 484, 551
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	6 cut(s)	132, 153, 276, 287, 453, 456
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	6 cut(s)	132, 153, 276, 287, 453, 456
FspBI	CTAG	2 cut(s)	342, 390
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	6 cut(s)	132, 153, 276, 287, 453, 456
HaeII	RGCGCY	1 cut(s)	502
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	300, 335
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HinfI	GANTC	3 cut(s)	53, 320, 583
HpaII	CCGG	2 cut(s)	300, 335
HphI	GGTGA	4 cut(s)	184, 250, 518, 584
Hpy188I	TCNGA	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	124, 211
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	3 cut(s)	10, 29, 348
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	9 cut(s)	93, 313, 335, 348, 353, 368, 380, 444, 506
Lsp1109I	GCAGC	2 cut(s)	439, 442
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	342, 390
MaeII	ACGT	1 cut(s)	556
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	6 cut(s)	40, 181, 223, 391, 409, 412
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	537
MlyI	GAGTC	3 cut(s)	47, 329, 577
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	495
MspI	CCGG	2 cut(s)	300, 335
MspR9I	CCNGG	3 cut(s)	301, 335, 368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	2 cut(s)	301, 335
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	2 cut(s)	62, 365
PaeR7I	CTCGAG	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	6 cut(s)	133, 154, 277, 288, 454, 457
PleI	GAGTC	3 cut(s)	47, 328, 577
PpsI	GAGTC	3 cut(s)	47, 328, 577
Ppu21I	YACGTR	1 cut(s)	557
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	62, 365
PspPI	GGNCC	3 cut(s)	268, 352, 364
PspPPI	RGGWCCY	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	89
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	6 cut(s)	132, 153, 276, 287, 453, 456
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	3 cut(s)	268, 352, 364
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	3 cut(s)	47, 329, 577
ScrFI	CCNGG	3 cut(s)	301, 335, 368
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	268, 364
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	537
SsiI	CCGC	8 cut(s)	108, 129, 132, 150, 153, 177, 276, 287
SspMI	CTAG	2 cut(s)	342, 390
StyD4I	CCNGG	3 cut(s)	299, 333, 366
TaaI	ACNGT	2 cut(s)	124, 211
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	3 cut(s)	51, 90, 581
TasI	AATT	1 cut(s)	537
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	4 cut(s)	134, 155, 278, 289
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseI	GCWGC	2 cut(s)	452, 455
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	268, 364
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	2 cut(s)	342, 390
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.