Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

15188297 .. 15189181

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGAATCTCCCTCTCTCTGCCTTCAAACTCCACCTCAAAGCCAAACCCCATCAAACCCTCCACCTCCTTCGACGACGACGCCACCACCCCCGACCTAAACGACGACGCATCGATCCAATACATCCACGAATTCACCTCCACCGAACAACCCCCACCCAAACCCCGTGTCATCCCGCCCATCCCAAACGAATGGCAGCCCGGCAACACCACCATCACCACCCTCGAATCCGCCGCCGATTCTCTCTCCATCGACGGCTCCGGTTCCGAGATTCCATACGGCCTCAATCTCCAGCAGAGACCCGATTCCGAGGAGGCGGCGATTCGGAAACTGAAGGAGGATTTGAAGGGGCTGCCGGAGATTAGGGGGGTGGAGGAGTTTGATGAGAATCCGGTGGAGGGATTCGGTGCGGCGCTGCTCGCTGGGTACGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

4.28

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	176, 231, 234, 317, 410
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	27, 346
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	196, 352, 415
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspLEI	GCGC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	127, 208
BbvI	GCAGC	3 cut(s)	208, 339, 402
BccI	CCATC	4 cut(s)	59, 188, 221, 257
BceAI	ACGGC	2 cut(s)	271, 295
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	292
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	6 cut(s)	197, 234, 318, 353, 411, 416
BlsI	GCNGC	6 cut(s)	198, 235, 319, 354, 412, 417
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	259, 265
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	2 cut(s)	260, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	123, 171, 180
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	326, 389
BseXI	GCAGC	3 cut(s)	208, 339, 402
BseYI	CCCAGC	1 cut(s)	422
BshFI	GGCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	201, 261, 356, 392
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	5 cut(s)	176, 231, 234, 317, 410
BspANI	GGCC	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	259, 265
BspPI	GGATC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	123, 171, 180
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	208, 339, 402
BstXI	CCANNNNNNTGG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	123, 171, 180
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	113
CseI	GACGC	2 cut(s)	89, 116
Csp6I	GTAC	1 cut(s)	427
CviJI	RGCY	5 cut(s)	43, 199, 258, 282, 352
CviKI_1	RGCY	5 cut(s)	43, 199, 258, 282, 352
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	131
FaiI	YATR	1 cut(s)	277
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	197, 234, 318, 353, 411, 416
FokI	GGATG	3 cut(s)	110, 158, 167
Fsp4HI	GCNGC	6 cut(s)	197, 234, 318, 353, 411, 416
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	6 cut(s)	197, 234, 318, 353, 411, 416
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	4 cut(s)	201, 261, 356, 392
HgaI	GACGC	2 cut(s)	89, 116
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	81
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	8 cut(s)	6, 227, 239, 271, 305, 322, 388, 402
HpaII	CCGG	4 cut(s)	201, 261, 356, 392
HphI	GGTGA	2 cut(s)	127, 208
Hpy188I	TCNGA	3 cut(s)	268, 310, 327
Hpy99I	CGWCG	6 cut(s)	77, 80, 83, 107, 110, 257
HpyAV	CCTTC	4 cut(s)	33, 79, 328, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	81
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	214, 274, 305, 369, 405, 408
Lsp1109I	GCAGC	3 cut(s)	208, 339, 402
LweI	GCATC	1 cut(s)	119
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MluCI	AATT	1 cut(s)	131
MspI	CCGG	4 cut(s)	201, 261, 356, 392
MspR9I	CCNGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	114
NlaIV	GGNNCC	2 cut(s)	259, 265
PfeI	GAWTC	8 cut(s)	6, 227, 239, 271, 305, 322, 388, 402
PkrI	GCNGC	6 cut(s)	198, 235, 319, 354, 412, 417
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	259, 265
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SatI	GCNGC	6 cut(s)	197, 234, 318, 353, 411, 416
Sau3AI	GATC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	4 cut(s)	38, 68, 99, 140
SfaNI	GCATC	1 cut(s)	119
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	5 cut(s)	176, 231, 234, 317, 410
StyD4I	CCNGG	1 cut(s)	199
TaqI	TCGA	4 cut(s)	72, 113, 225, 252
TasI	AATT	1 cut(s)	131
TauI	GCSGC	3 cut(s)	236, 320, 413
TfiI	GAWTC	8 cut(s)	6, 227, 239, 271, 305, 322, 388, 402
TseI	GCWGC	3 cut(s)	196, 352, 415
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.