Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

32352673 .. 32352996

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAACAGCCTCGAATTCGTGGCCGAGTCTCTCTCAATCGACGGCTCATATTCCGAGATCCCGTACGGCCTCAATCTCCGGCAGAGACCCGAATCCGAGGAGGCGGTGGTTCAGAAATTGAAAGAGGAATTGAAGGCGTTGCCGGAGATTAGGGGGATGGAGGAGTTTGATGAGAATCCGGTGGAGGGGTTCGGTGCGGCTCTGCTCGCCGGGTACGGGTGGCAACCGGGGCGAGGAATCGGCAAGAACGCAAAGGAAGATGTTGGTGTTGTGGAGGTCCGGCCCAATGTGGGAAGGCAAGGGTTAGGGTTTCGACCGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

107

Amino Acids

11.75

Weight (kDa)

4.68

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	48 - 106	7.7e-17	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 197
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	2 cut(s)	65, 215
AfiI	CCNNNNNNNGG	4 cut(s)	185, 216, 233, 290
AgsI	TTSAA	2 cut(s)	121, 133
Alw26I	GTCTC	2 cut(s)	33, 79
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	3 cut(s)	21, 67, 281
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	277, 282
AsuC2I	CCSGG	2 cut(s)	211, 228
AvaII	GGWCC	1 cut(s)	277
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	2 cut(s)	58, 82
BcnI	CCSGG	2 cut(s)	211, 228
BcoDI	GTCTC	2 cut(s)	33, 79
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	211, 228
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 282
BmrFI	CCNGG	2 cut(s)	211, 228
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	2 cut(s)	211, 228
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	96, 227
BsaWI	WCCGGW	2 cut(s)	178, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 216, 233, 290
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	96, 227
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	185, 216, 233, 290
BseRI	GAGGAG	2 cut(s)	113, 176
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	23, 69, 283
BsiEI	CGRYCG	1 cut(s)	317
BsiSI	CCGG	7 cut(s)	79, 143, 179, 210, 227, 280, 317
BsiWI	CGTACG	1 cut(s)	63
BslI	CCNNNNNNNGG	4 cut(s)	185, 216, 233, 290
BsmAI	GTCTC	2 cut(s)	33, 79
BsnI	GGCC	3 cut(s)	23, 69, 283
Bso31I	GGTCTC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	104, 197
BspANI	GGCC	3 cut(s)	23, 69, 283
BspPI	GGATC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	96, 227
BssMI	GATC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	2 cut(s)	33, 79
BstMBI	GATC	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 229
BstSCI	CCNGG	2 cut(s)	209, 226
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	23, 69, 283
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	277, 282
Csp6I	GTAC	2 cut(s)	64, 214
CviJI	RGCY	6 cut(s)	9, 23, 45, 69, 200, 283
CviKI_1	RGCY	6 cut(s)	9, 23, 45, 69, 200, 283
CviQI	GTAC	2 cut(s)	64, 214
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	14
FaiI	YATR	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	23, 69, 283
HapII	CCGG	7 cut(s)	79, 143, 179, 210, 227, 280, 317
HinfI	GANTC	4 cut(s)	26, 92, 175, 237
HpaII	CCGG	7 cut(s)	79, 143, 179, 210, 227, 280, 317
Hpy188I	TCNGA	3 cut(s)	55, 97, 114
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	127, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 229
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	92, 156, 192, 223, 240, 293
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	269
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	3 cut(s)	14, 116, 128
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	20, 80, 91, 94, 118, 154, 178, 227, 268
MspI	CCGG	7 cut(s)	79, 143, 179, 210, 227, 280, 317
MspR9I	CCNGG	2 cut(s)	211, 228
MwoI	GCNNNNNNNGC	2 cut(s)	206, 229
NciI	CCSGG	2 cut(s)	211, 228
NdeII	GATC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	92, 175, 237
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspLI	CGTACG	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	277, 282
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	65, 215
RsaNI	GTAC	2 cut(s)	64, 214
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	2 cut(s)	277, 282
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	211, 228
SetI	ASST	1 cut(s)	279
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	14, 116, 128
SsiI	CCGC	2 cut(s)	104, 197
StyD4I	CCNGG	2 cut(s)	209, 226
TaqI	TCGA	3 cut(s)	12, 39, 313
TasI	AATT	3 cut(s)	14, 116, 128
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	92, 175, 237
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.