Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

33632537 .. 33633187

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG258200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGAATCTCTTTCTCTCTGCCTTCAAACTCCTCCTCGAAGCCAAACCCTATCGAACCCTCCACTTCCTTCGAAGACGACGACGACGACACCACTACCCCCAACCTAAACGACGACGCATCGAAACAATACATCCACGAATTCACCGCCGCGGAAGAGCCCTCAGCCAAACCCCGCGTGATCCCGCCCATCCCAAACGAATGGCAGCCGGGGAAGAACACCGTGAACAACCTCGAATTCGTGGCCGAGTCTCTCTCAATCGACGGCTCATATTCCGAGATCCCGTACTGCCTCAATCTCCGGCAGAGACCCGAATCCGAGGAGGCGGTGGTTCAGAAATTGAAAGAGGAATTGAAGGCGTTACCGGAGATTAGGGGGATGGAGGAGTTTGATGAGAATCCGGTGGAGGGGTTCGGTGCGGCTCTGCTCGCCGGGTACGGGTGGCAACCGGGGCGAGGAATCGGCAAGAACGCAAAGGAAGATGTTGGCGTTGTGGAGGTCCGGCCCAATGTGGGAAGGCAAGGGTTAGGGTTTCGACCGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

181

Amino Acids

19.97

Weight (kDa)

4.53

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	122 - 180	2.6e-16	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	152, 177
AciI	CCGC	7 cut(s)	147, 150, 152, 175, 185, 326, 419
AclWI	GGATC	2 cut(s)	175, 274
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	140, 236
AfaI	GTAC	2 cut(s)	287, 437
AfiI	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
AgsI	TTSAA	3 cut(s)	27, 343, 355
Alw26I	GTCTC	2 cut(s)	255, 301
AlwI	GGATC	2 cut(s)	175, 274
AoxI	GGCC	2 cut(s)	243, 503
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	140, 236
AspS9I	GGNCC	2 cut(s)	499, 504
AsuC2I	CCSGG	3 cut(s)	210, 433, 450
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	197, 373
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	3 cut(s)	210, 433, 450
BcoDI	GTCTC	2 cut(s)	255, 301
BisI	GCNGC	3 cut(s)	150, 206, 420
BlsI	GCNGC	3 cut(s)	151, 207, 421
Bme1390I	CCNGG	3 cut(s)	210, 433, 450
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	499, 504
BmrFI	CCNGG	3 cut(s)	210, 433, 450
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	3 cut(s)	210, 433, 450
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	4 cut(s)	150, 209, 318, 449
BsaWI	WCCGGW	3 cut(s)	364, 400, 538
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	4 cut(s)	150, 209, 318, 449
BseGI	GGATG	3 cut(s)	132, 189, 384
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	4 cut(s)	22, 25, 335, 398
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	152, 177
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	245, 505
BsiEI	CGRYCG	1 cut(s)	539
BsiSI	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
BslI	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
BsmAI	GTCTC	2 cut(s)	255, 301
BsnI	GGCC	2 cut(s)	245, 505
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	180, 279
BspACI	CCGC	7 cut(s)	147, 150, 152, 175, 185, 326, 419
BspANI	GGCC	2 cut(s)	245, 505
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	152, 177
BspPI	GGATC	2 cut(s)	175, 274
BspQI	GCTCTTC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	301
BssECI	CCNNGG	4 cut(s)	150, 209, 318, 449
BssMI	GATC	2 cut(s)	180, 279
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	163
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	132, 189, 384
BstFNI	CGCG	2 cut(s)	152, 177
BstKTI	GATC	2 cut(s)	183, 282
BstMAI	GTCTC	2 cut(s)	255, 301
BstMBI	GATC	2 cut(s)	180, 279
BstMCI	CGRYCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 451
BstSCI	CCNGG	3 cut(s)	208, 431, 448
BstUI	CGCG	2 cut(s)	152, 177
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	245, 505
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	132, 189, 384
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	499, 504
Cfr42I	CCGCGG	1 cut(s)	153
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	286, 436
CviJI	RGCY	8 cut(s)	43, 160, 167, 208, 245, 267, 422, 505
CviKI_1	RGCY	8 cut(s)	43, 160, 167, 208, 245, 267, 422, 505
CviQI	GTAC	2 cut(s)	286, 436
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	2 cut(s)	182, 281
DpnII	GATC	2 cut(s)	180, 279
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	499
EcoRI	GAATTC	2 cut(s)	140, 236
EcoT38I	GRGCYC	1 cut(s)	162
FaiI	YATR	1 cut(s)	271
FauI	CCCGC	2 cut(s)	182, 192
Fnu4HI	GCNGC	3 cut(s)	150, 206, 420
FokI	GGATG	3 cut(s)	119, 176, 391
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	150, 206, 420
GluI	GCNGC	3 cut(s)	150, 206, 420
HaeIII	GGCC	2 cut(s)	245, 505
HapII	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
HgaI	GACGC	1 cut(s)	125
HinfI	GANTC	5 cut(s)	6, 248, 314, 397, 459
HpaII	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	277, 319, 336
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	6 cut(s)	83, 86, 89, 116, 119, 266
HpyAV	CCTTC	4 cut(s)	33, 79, 349, 510
HpyCH4III	ACNGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 451
HpyF3I	CTNAG	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	180, 279
LguI	GCTCTTC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	222, 314, 378, 414, 445, 462, 515
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	182, 281
MboI	GATC	2 cut(s)	180, 279
MboII	GAAGA	4 cut(s)	86, 167, 226, 491
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	140, 236, 338, 350
MlyI	GAGTC	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
MspR9I	CCNGG	3 cut(s)	210, 433, 450
MvnI	CGCG	2 cut(s)	152, 177
MwoI	GCNNNNNNNGC	2 cut(s)	428, 451
NciI	CCSGG	3 cut(s)	210, 433, 450
NdeII	GATC	2 cut(s)	180, 279
NmeAIII	GCCGAG	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 84
PfeI	GAWTC	4 cut(s)	6, 314, 397, 459
PkrI	GCNGC	3 cut(s)	151, 207, 421
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	499, 504
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	2 cut(s)	287, 437
RsaNI	GTAC	2 cut(s)	286, 436
SacII	CCGCGG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	150
SatI	GCNGC	3 cut(s)	150, 206, 420
Sau3AI	GATC	2 cut(s)	180, 279
Sau96I	GGNCC	2 cut(s)	499, 504
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	210, 433, 450
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	3 cut(s)	108, 234, 501
SfaNI	GCATC	1 cut(s)	128
Sfr303I	CCGCGG	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	499
Sse9I	AATT	4 cut(s)	140, 236, 338, 350
SsiI	CCGC	7 cut(s)	147, 150, 152, 175, 185, 326, 419
StyD4I	CCNGG	3 cut(s)	208, 431, 448
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	7 cut(s)	38, 54, 72, 122, 234, 261, 535
TasI	AATT	4 cut(s)	140, 236, 338, 350
TauI	GCSGC	2 cut(s)	152, 422
TfiI	GAWTC	4 cut(s)	6, 314, 397, 459
TseI	GCWGC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	140, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.