Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

9442333 .. 9442567

Gene Structure 235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTGCTTCATAAATTGAAACAGGAATTGAAGGTGTTGTCGGAGATTAGGGGGATGGAGGAGTCTAATGAGAATCTGGTGGAGGGATTCAGTGAGGCTTTGCTCGCCGGGTATGGGTGGCAACCAGGACAAGGAGTCGGCAAGAATGCAAAGGAAGATGTCGGTTTGACAAGGGGTAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

61

Amino Acids

6.64

Weight (kDa)

5.25

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	27 - 54	1.1e-08	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	114, 131
AgsI	TTSAA	2 cut(s)	19, 31
AhdI	GACNNNNNGTC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	109
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	109, 126
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	109, 126
BpuMI	CCSGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 131
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	114, 131
BseRI	GAGGAG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	114, 131
BsmI	GAATGC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	107, 124
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	105
CviJI	RGCY	1 cut(s)	98
CviKI_1	RGCY	1 cut(s)	98
DriI	GACNNNNNGTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	124
FaiI	YATR	4 cut(s)	12, 114, 182, 184
FokI	GGATG	1 cut(s)	67
HapII	CCGG	1 cut(s)	108
HinfI	GANTC	4 cut(s)	62, 73, 87, 135
HpaII	CCGG	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
LpnPI	CCDG	5 cut(s)	8, 62, 111, 121, 138
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	2 cut(s)	14, 26
MlyI	GAGTC	2 cut(s)	71, 144
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	3 cut(s)	52, 76, 88
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	109, 126
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	109
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	73, 87
PleI	GAGTC	2 cut(s)	70, 143
PpsI	GAGTC	2 cut(s)	70, 143
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
SchI	GAGTC	2 cut(s)	71, 144
ScrFI	CCNGG	2 cut(s)	109, 126
SetI	ASST	1 cut(s)	36
SgeI	CNNG	9 cut(s)	35, 89, 116, 120, 121, 137, 138, 143, 154
Sse9I	AATT	2 cut(s)	14, 26
StyD4I	CCNGG	2 cut(s)	107, 124
TasI	AATT	2 cut(s)	14, 26
TfiI	GAWTC	2 cut(s)	73, 87
TscAI	CASTG	1 cut(s)	97
TspRI	CASTG	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.