Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Reverse (-)

61181998 .. 61183362

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGAATCTCTTTCTCTCTGCCTTCAAACTCCTCCTCAAAGCCAAACCCTATCAAACCCTCAACCTCCTTCGACGACGACGACGACGAAACCACCAACCCCAACCTAAACGACGACGCATCGAAACAATACATCCATGAATTCACCGCCGCGGAAGAGCCCTCAGCCAAACCCCGCGTGATCCCGCCCATCCCAAACGAATGGCAGCCGGGGAAGAACACCATGAACAACCTCGAATTCGTGGCCGAGTCTCTCTCTATCGAACGCTCAAATTTCGAGATTCCGAACGGCCTCAATCTCCGGCGGAGACCCGAATCCGAGGAGGCCGTGGTTCAGAAATTGAAAGAGGAATTGAAGGCGTTGCCGGAGATTAGGGGGATGGAGGAGTTTGATGAGAATCCGGTGGAGGGGTTCGGTGCGGCTCTGCTCGCCGGGTACGGGTGGCAACCGGGGCGAGGAATCGGCAAGAACGCAAAGGAAGATGTTGGTGTTGTGGAGGTCCGGCCCAATGTGGGAAGGCAAGGGTTAGGTTTCCGACCGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

4.77

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	122 - 180	2.6e-16	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	152, 177
AciI	CCGC	7 cut(s)	147, 150, 152, 175, 185, 304, 419
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	140, 236, 271
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
AgsI	TTSAA	3 cut(s)	27, 343, 355
Alw26I	GTCTC	2 cut(s)	255, 301
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	4 cut(s)	243, 289, 324, 503
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	3 cut(s)	140, 236, 271
AspS9I	GGNCC	2 cut(s)	499, 504
AsuC2I	CCSGG	3 cut(s)	210, 433, 450
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	197, 373
BceAI	ACGGC	2 cut(s)	304, 311
BcnI	CCSGG	3 cut(s)	210, 433, 450
BcoDI	GTCTC	2 cut(s)	255, 301
BisI	GCNGC	3 cut(s)	150, 206, 420
BlsI	GCNGC	3 cut(s)	151, 207, 421
Bme1390I	CCNGG	3 cut(s)	210, 433, 450
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	499, 504
BmrFI	CCNGG	3 cut(s)	210, 433, 450
BmsI	GCATC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	1 cut(s)	163
BpuMI	CCSGG	3 cut(s)	210, 433, 450
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	5 cut(s)	150, 209, 318, 327, 449
BsaWI	WCCGGW	2 cut(s)	400, 538
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	5 cut(s)	150, 209, 318, 327, 449
BseGI	GGATG	3 cut(s)	132, 189, 384
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	4 cut(s)	22, 25, 335, 398
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	152, 177
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	4 cut(s)	245, 291, 326, 505
BsiEI	CGRYCG	1 cut(s)	539
BsiSI	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
BslI	CCNNNNNNNGG	4 cut(s)	407, 438, 455, 512
BsmAI	GTCTC	2 cut(s)	255, 301
BsnI	GGCC	4 cut(s)	245, 291, 326, 505
Bso31I	GGTCTC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	7 cut(s)	147, 150, 152, 175, 185, 304, 419
BspANI	GGCC	4 cut(s)	245, 291, 326, 505
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	152, 177
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	301
BssECI	CCNNGG	5 cut(s)	150, 209, 318, 327, 449
BssMI	GATC	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	163
BstDSI	CCRYGG	2 cut(s)	150, 327
BstF5I	GGATG	3 cut(s)	132, 189, 384
BstFNI	CGCG	2 cut(s)	152, 177
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	255, 301
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 451
BstSCI	CCNGG	3 cut(s)	208, 431, 448
BstUI	CGCG	2 cut(s)	152, 177
BstV1I	GCAGC	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	245, 291, 326, 505
BtgI	CCRYGG	2 cut(s)	150, 327
BtsCI	GGATG	3 cut(s)	132, 189, 384
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	499, 504
Cfr42I	CCGCGG	1 cut(s)	153
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	2 cut(s)	137, 223
CviJI	RGCY	9 cut(s)	43, 160, 167, 208, 245, 291, 326, 422, 505
CviKI_1	RGCY	9 cut(s)	43, 160, 167, 208, 245, 291, 326, 422, 505
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	499
EcoRI	GAATTC	2 cut(s)	140, 236
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	2 cut(s)	140, 226
FaiI	YATR	2 cut(s)	138, 224
FatI	CATG	2 cut(s)	136, 222
FauI	CCCGC	2 cut(s)	182, 192
Fnu4HI	GCNGC	3 cut(s)	150, 206, 420
FokI	GGATG	3 cut(s)	119, 176, 391
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	150, 206, 420
GluI	GCNGC	3 cut(s)	150, 206, 420
HaeIII	GGCC	4 cut(s)	245, 291, 326, 505
HapII	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	140, 226
HinfI	GANTC	6 cut(s)	6, 248, 280, 314, 397, 459
HpaII	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	285, 319, 336, 536
Hpy188III	TCNNGA	1 cut(s)	277
Hpy99I	CGWCG	7 cut(s)	77, 80, 83, 86, 89, 116, 119
HpyAV	CCTTC	4 cut(s)	33, 79, 349, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 451
HpyF3I	CTNAG	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	140, 226
KspI	CCGCGG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	180
LguI	GCTCTTC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	222, 314, 378, 414, 445, 462, 515
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	128
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	167, 226, 491
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	5 cut(s)	140, 236, 271, 338, 350
MlyI	GAGTC	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	8 cut(s)	209, 301, 365, 401, 432, 449, 502, 539
MspR9I	CCNGG	3 cut(s)	210, 433, 450
MvnI	CGCG	2 cut(s)	152, 177
MwoI	GCNNNNNNNGC	2 cut(s)	428, 451
NciI	CCSGG	3 cut(s)	210, 433, 450
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	140, 226
NmeAIII	GCCGAG	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 81, 84
PfeI	GAWTC	5 cut(s)	6, 280, 314, 397, 459
PkrI	GCNGC	3 cut(s)	151, 207, 421
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	499, 504
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SacII	CCGCGG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	150
SatI	GCNGC	3 cut(s)	150, 206, 420
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	499, 504
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	210, 433, 450
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	5 cut(s)	68, 108, 234, 501, 532
SfaNI	GCATC	1 cut(s)	128
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	499
Sse9I	AATT	5 cut(s)	140, 236, 271, 338, 350
SsiI	CCGC	7 cut(s)	147, 150, 152, 175, 185, 304, 419
StyD4I	CCNGG	3 cut(s)	208, 431, 448
TaqI	TCGA	5 cut(s)	72, 122, 234, 261, 276
TasI	AATT	5 cut(s)	140, 236, 271, 338, 350
TauI	GCSGC	2 cut(s)	152, 422
TfiI	GAWTC	5 cut(s)	6, 280, 314, 397, 459
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	153, 239
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	3 cut(s)	140, 236, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.