Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

9656139 .. 9656463

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG105000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAACAACCTCAAATTCCTGGCTGAGTCGCTCTATGTAGACGGCTCCGATTCCAAGATTCCATACGGCTTCAATCTCCAGCAGAGACCCAAATCTAAGGAGATGGTGCTTCATAAATTGAAACAGGAATTGAAGGTGCTGCCGGAGATTAGGGGGATGGAGGAGCCTGATGAGAATCAGGTGGAGGGATTCGGTGCGGCTTTGCTCGCCGGGTACGGGTGGCAACCAGGACAAGGAGTCGGCAAGAACGCAAAGGAAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

88

Amino Acids

9.81

Weight (kDa)

5.35

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	49 - 87	1.8e-10	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	216, 233
AgsI	TTSAA	3 cut(s)	73, 121, 133
AhdI	GACNNNNNGTC	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	18, 226
Alw26I	GTCTC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	97, 151
BceAI	ACGGC	2 cut(s)	58, 82
BciT130I	CCWGG	2 cut(s)	20, 228
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	140, 198
BlsI	GCNGC	2 cut(s)	141, 199
Bme1390I	CCNGG	3 cut(s)	20, 211, 228
BmeRI	GACNNNNNGTC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	46, 165
BmrFI	CCNGG	3 cut(s)	20, 211, 228
BpmI	CTGGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 233
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	20, 228
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	216, 233
BseMII	CTCAG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	143, 210
BslI	CCNNNNNNNGG	2 cut(s)	216, 233
BsmAI	GTCTC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	46, 165
BspTNI	GGTCTC	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	20, 228
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	24, 96
BstF5I	GGATG	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	20, 228
BstSCI	CCNGG	3 cut(s)	18, 209, 226
BstV1I	GCAGC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	5 cut(s)	23, 45, 69, 166, 200
CviKI_1	RGCY	5 cut(s)	23, 45, 69, 166, 200
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	24, 96
DriI	GACNNNNNGTC	1 cut(s)	236
Eam1105I	GACNNNNNGTC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	18, 226
FaiI	YATR	3 cut(s)	36, 64, 114
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	140, 198
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	140, 198
GluI	GCNGC	2 cut(s)	140, 198
GsuI	CTGGAG	1 cut(s)	62
HapII	CCGG	2 cut(s)	143, 210
HinfI	GANTC	6 cut(s)	26, 50, 58, 175, 189, 237
HpaII	CCGG	2 cut(s)	143, 210
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	24, 96
LmnI	GCTCC	2 cut(s)	50, 163
Lsp1109I	GCAGC	1 cut(s)	126
MluCI	AATT	3 cut(s)	14, 116, 128
MlyI	GAGTC	2 cut(s)	35, 246
MnlI	CCTC	3 cut(s)	20, 154, 178
MspI	CCGG	2 cut(s)	143, 210
MspR9I	CCNGG	3 cut(s)	20, 211, 228
MvaI	CCWGG	2 cut(s)	20, 228
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	46, 165
PfeI	GAWTC	4 cut(s)	50, 58, 175, 189
PkrI	GCNGC	2 cut(s)	141, 199
PleI	GAGTC	2 cut(s)	34, 245
PpsI	GAGTC	2 cut(s)	34, 245
Psp6I	CCWGG	2 cut(s)	18, 226
PspGI	CCWGG	2 cut(s)	18, 226
PspN4I	GGNNCC	2 cut(s)	46, 165
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SatI	GCNGC	2 cut(s)	140, 198
SchI	GAGTC	2 cut(s)	35, 246
ScrFI	CCNGG	3 cut(s)	20, 211, 228
SetI	ASST	3 cut(s)	12, 138, 183
Sse9I	AATT	3 cut(s)	14, 116, 128
SsiI	CCGC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	18, 209, 226
TasI	AATT	3 cut(s)	14, 116, 128
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	4 cut(s)	50, 58, 175, 189
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	17, 101
XapI	RAATTY	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.