Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

12999568 .. 13000602

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G208700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGCTCTCGTTCTCTCTGCCATCGAAACCCTCTTCAAACCCTAACCCCAAACCCTCAACCGCATTCAACGACAGCAACGCCGACACAAACGACGACGGCTCAATTCAATACGTCAACGAATTCGACGCCTCGCAACCCCTACGCGGCGACCCCAAAACCCGCGTAATCCCTCCGATCCCTAACGAATGGCTGATGAAACCCGAATCCGAGAATCGCTCCGAGGTCCGGTCGCTCTCTGCCAGGATTTCCAACGGTCTCAATCTCCGGCCGAAGCTCGAATCGGAGAACGGGGAACGTGATGAACGGTTGAGATCTGCAGGCGTGGATTTGGAGACGCTGGCGCTCCAGAAATTGAAAGAGGACTTGGAGCGGTTGCCGGAGCACAGGGGAATGGAGGAGTACAACGACGTGTCGGTGGAGGGCTACGGGTCGGCGTTGCTTGCCGGGTACGGGTGGTGTCCGGGCAAAGGAATAGGGAAGCACGCTGAGAAGGATGTCAAGGTCGTGGAGTTCAATCGGAGACCGAACGACAGGCACGGGTTAGGGTTTCGTATGAGTCGTATAGACGACCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

194

Amino Acids

21.65

Weight (kDa)

5.53

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	2 cut(s)	147, 165
AciI	CCGC	4 cut(s)	63, 147, 163, 373
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	404, 452
AfiI	CCNNNNNNNGG	4 cut(s)	146, 228, 453, 470
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	5 cut(s)	39, 70, 110, 358, 517
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	2 cut(s)	7, 277
AluI	AGCT	2 cut(s)	7, 277
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	3 cut(s)	263, 329, 517
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	2 cut(s)	448, 465
AvaII	GGWCC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	448, 465
BcoDI	GTCTC	3 cut(s)	263, 329, 517
BfmI	CTRYAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	347
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	3 cut(s)	244, 448, 465
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	244, 448, 465
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	448, 465
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	263, 517
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 228, 453, 470
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	4 cut(s)	146, 228, 453, 470
BseMII	CTCAG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	413
BseX3I	CGGCCG	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	147, 165
Bsh1285I	CGRYCG	2 cut(s)	233, 272
BshFI	GGCC	1 cut(s)	271
BsiEI	CGRYCG	2 cut(s)	233, 272
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	229, 268, 380, 447, 464
BslI	CCNNNNNNNGG	4 cut(s)	146, 228, 453, 470
BsmAI	GTCTC	3 cut(s)	263, 329, 517
BsmBI	CGTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	2 cut(s)	263, 517
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	177, 314
BspACI	CCGC	4 cut(s)	63, 147, 163, 373
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	2 cut(s)	147, 165
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	172
BspTNI	GGTCTC	2 cut(s)	263, 517
BsrBI	CCGCTC	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	177, 314
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	257, 309
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	322, 342, 444, 486
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	2 cut(s)	147, 165
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	180, 317
BstMAI	GTCTC	3 cut(s)	263, 329, 517
BstMBI	GATC	2 cut(s)	177, 314
BstMCI	CGRYCG	2 cut(s)	233, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	242, 446, 463
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	2 cut(s)	147, 165
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	502
Cac8I	GCNNGC	4 cut(s)	322, 342, 444, 486
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	2 cut(s)	137, 346
Csp6I	GTAC	2 cut(s)	403, 451
CviJI	RGCY	6 cut(s)	7, 102, 193, 271, 277, 426
CviKI_1	RGCY	6 cut(s)	7, 102, 193, 271, 277, 426
CviQI	GTAC	2 cut(s)	403, 451
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	2 cut(s)	179, 316
DpnII	GATC	2 cut(s)	177, 314
EaeI	YGGCCR	1 cut(s)	269
EagI	CGGCCG	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	269
Eco31I	GGTCTC	2 cut(s)	263, 517
Eco47I	GGWCC	1 cut(s)	226
Eco52I	CGGCCG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	329
FaiI	YATR	2 cut(s)	557, 566
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	148
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	5 cut(s)	229, 268, 380, 447, 464
HgaI	GACGC	2 cut(s)	137, 346
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	206, 214, 281, 559
HpaII	CCGG	5 cut(s)	229, 268, 380, 447, 464
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	177, 211, 223, 286, 522
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	4 cut(s)	98, 101, 131, 413
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	2 cut(s)	257, 309
HpyCH4IV	ACGT	3 cut(s)	114, 298, 411
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	3 cut(s)	114, 298, 411
Hsp92I	GRCGYC	1 cut(s)	129
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	177, 314
LmnI	GCTCC	4 cut(s)	224, 351, 370, 382
MaeII	ACGT	3 cut(s)	114, 298, 411
MalI	GATC	2 cut(s)	179, 316
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	2 cut(s)	177, 314
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	3 cut(s)	105, 122, 353
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	8 cut(s)	43, 67, 142, 183, 217, 355, 391, 415
MspI	CCGG	5 cut(s)	229, 268, 380, 447, 464
MspR9I	CCNGG	3 cut(s)	244, 448, 465
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	147, 165
MwoI	GCNNNNNNNGC	1 cut(s)	443
NciI	CCSGG	2 cut(s)	448, 465
NdeII	GATC	2 cut(s)	177, 314
PcsI	WCGNNNNNNNCGW	1 cut(s)	559
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	206, 214, 281
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	2 cut(s)	404, 452
RsaNI	GTAC	2 cut(s)	403, 451
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	177, 314
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	3 cut(s)	244, 448, 465
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	7 cut(s)	9, 117, 228, 279, 301, 414, 507
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	3 cut(s)	105, 122, 353
SsiI	CCGC	4 cut(s)	63, 147, 163, 373
StyD4I	CCNGG	3 cut(s)	242, 446, 463
TaaI	ACNGT	2 cut(s)	257, 309
TaiI	ACGT	3 cut(s)	117, 301, 414
TaqI	TCGA	3 cut(s)	26, 126, 279
TaqII	GACCGA	1 cut(s)	541
TasI	AATT	3 cut(s)	105, 122, 353
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	206, 214, 281
TspDTI	ATGAA	3 cut(s)	17, 212, 318
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.