Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

9661683 .. 9661952

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG116800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGACGGGTCTTTTCCTCATGAAGGCCTTGAATCTGATCTCCGCTGCCAAGGACAAGCATTATGTCAAGGTCACTGGCACCGCGCACGGCTGGGATGTGTTGTTCTATATCTCTTACTTCCAAATCTTGATCTCTCCCATCCCAAACGAATGGCAGCCCGGCAAGAAGACTATAAACAACCTCAAATTCGTGGCTGAGTCGCTCTATGTAGACGGCTCCGATTCCAAGATTTCATACGGCTTCAATCTCCAGCAAAGAGCCCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

89

Amino Acids

10.08

Weight (kDa)

9.26

Isoelectric Point (pI)

23.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	83
AciI	CCGC	2 cut(s)	42, 81
AcsI	RAATTY	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	31, 244
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	44, 154
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	31, 166
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	3 cut(s)	103, 229, 253
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	268
BisI	GCNGC	2 cut(s)	45, 155
BlsI	GCNGC	2 cut(s)	46, 156
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	79, 217
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	100, 138
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	31, 166
BseYI	CCCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	36, 129
BspACI	CCGC	2 cut(s)	42, 81
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	79, 217
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	36, 129
BssT1I	CCWWGG	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	100, 138
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	39, 132
BstMBI	GATC	2 cut(s)	36, 129
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	31, 166
BstV2I	GAAGAC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	100, 138
BtsIMutI	CAGTG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	85
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	7 cut(s)	26, 90, 157, 194, 216, 240, 260
CviKI_1	RGCY	7 cut(s)	26, 90, 157, 194, 216, 240, 260
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	38, 131
DpnII	GATC	2 cut(s)	36, 129
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	22
FaiI	YATR	6 cut(s)	20, 63, 108, 173, 207, 235
FatI	CATG	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	45, 155
FokI	GGATG	2 cut(s)	107, 125
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	45, 155
FspBI	CTAG	1 cut(s)	268
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	45, 155
GsaI	CCCAGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	3 cut(s)	31, 197, 221
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	36, 220
Hpy188III	TCNNGA	2 cut(s)	19, 127
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	36, 129
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	4 cut(s)	60, 76, 172, 263
Lsp1109I	GCAGC	2 cut(s)	31, 166
MaeI	CTAG	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	38, 131
MboI	GATC	2 cut(s)	36, 129
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	26, 191
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	83
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	36, 129
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	79, 217
NmuCI	GTSAC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	31, 221
PkrI	GCNGC	2 cut(s)	46, 156
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	79, 217
SatI	GCNGC	2 cut(s)	45, 155
Sau3AI	GATC	2 cut(s)	36, 129
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	2 cut(s)	72, 183
Sse9I	AATT	1 cut(s)	185
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	42, 81
SspMI	CTAG	1 cut(s)	268
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	48
TasI	AATT	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	31, 221
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	44, 154
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	35, 222
TspRI	CASTG	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.