Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

10519970 .. 10521953

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCCCAAGGTCGCCGACATCGACCCCTCCCGCCTCGGCTTCTTCCTTCTCTCCGAGGAGTCCCTCCTCCAGGTCCTCGTCGAGATCCAGCAGAACCCTCAGCTCTGCGTCTTGGACTCCCACTATATCACCCACCTCTTCAACTTCCGCTCCCTTTCTCCTCCGCCTTGCTCCACCTTTAACCAGTCTTATCTAGGGCTGGGCGCGGGTCGGATCCACATCCTCATAGCGGGGCTTCTCCTCATGAAGGCCTTGAATCTAATCTCCGCTGTCGAGGACAAGCATTACGTCAAGGTCACTGGCACCGCGCACGGCTGGGATGTGCTGTTCTACATGTCTTACCTCCAAATCTTGATCTCTCCCATCCCAAACGAATGGCAGCCTAACAAGAAGACCATGAACAACCTCGAATTCGTGGCTGAGTCACCCTCTGTAGACGGCTCCAATTCCAATATTCCATACCGCTTCAATCTCCGGCAAAGACCCGAATTTAAGGAGATGGTGCTTTATAAATTGAAACAGGAATTGAAGGTGCTGCCGGAGATTAGGGGGATGGAGGAGTTTGATGAGAATTTGGTGGAGGGATTTGGTGCAGCTTTGCTCGCCGAGTACGGGTGGCAACCAGGACAAGGAGTCGGCAAGAACGCAAAGGAAGATGTCGGTGAGGAACTGAGGAAATTGAAAAGATTACTTTTTTTTTCTTCCTTATTTAGGTTTGACAAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

243

Amino Acids

27.54

Weight (kDa)

5.99

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAND6-7_N	PF21904	6 - 64	1.3e-20	CAND6/7, N-terminal domain
G-patch_2	PF12656	181 - 224	1.8e-09	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	2 cut(s)	206, 308
AciI	CCGC	8 cut(s)	31, 148, 164, 206, 230, 267, 306, 463
AclWI	GGATC	3 cut(s)	79, 208, 221
AcsI	RAATTY	3 cut(s)	410, 488, 571
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	6 cut(s)	70, 229, 247, 612, 629, 711
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	6 cut(s)	142, 256, 469, 517, 529, 682
AhdI	GACNNNNNGTC	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	69, 622
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	103, 596
AluI	AGCT	2 cut(s)	103, 596
AlwI	GGATC	3 cut(s)	79, 208, 221
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	379, 535, 593
ApoI	RAATTY	3 cut(s)	410, 488, 571
AspLEI	GCGC	2 cut(s)	206, 310
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	121, 417, 674
AvaII	GGWCC	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	391, 522, 605
BccI	CCATC	3 cut(s)	371, 493, 547
BceAI	ACGGC	2 cut(s)	328, 454
BciT130I	CCWGG	2 cut(s)	71, 624
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	3 cut(s)	380, 536, 594
BlsI	GCNGC	3 cut(s)	381, 537, 595
Bme1390I	CCNGG	2 cut(s)	71, 624
Bme18I	GGWCC	1 cut(s)	73
BmeRI	GACNNNNNGTC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	3 cut(s)	215, 304, 442
BmrFI	CCNGG	2 cut(s)	71, 624
BpiI	GAAGAC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	6, 34, 54
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 229, 247, 612, 629, 711
Bse1I	ACTGG	2 cut(s)	184, 304
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	71, 624
BseDI	CCNNGG	3 cut(s)	6, 34, 54
BseGI	GGATG	4 cut(s)	219, 325, 363, 558
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	6 cut(s)	70, 229, 247, 612, 629, 711
BseMII	CTCAG	3 cut(s)	113, 411, 662
BseNI	ACTGG	2 cut(s)	184, 304
BseRI	GAGGAG	5 cut(s)	56, 71, 150, 230, 572
BseXI	GCAGC	3 cut(s)	391, 522, 605
BseYI	CCCAGC	2 cut(s)	199, 315
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	2 cut(s)	206, 308
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	475, 539
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	6 cut(s)	70, 229, 247, 612, 629, 711
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	84, 213, 354
BspACI	CCGC	8 cut(s)	31, 148, 164, 206, 230, 267, 306, 463
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	3 cut(s)	112, 412, 663
BspFNI	CGCG	2 cut(s)	206, 308
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	215, 304, 442
BspPI	GGATC	3 cut(s)	79, 208, 221
BspT107I	GGYRCC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	184, 304
BssECI	CCNNGG	3 cut(s)	6, 34, 54
BssMI	GATC	3 cut(s)	84, 213, 354
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	71, 624
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	99, 420, 671
BstENI	CCTNNNNNAGG	3 cut(s)	68, 245, 709
BstF5I	GGATG	4 cut(s)	219, 325, 363, 558
BstFNI	CGCG	2 cut(s)	206, 308
BstHHI	GCGC	2 cut(s)	206, 310
BstKTI	GATC	3 cut(s)	87, 216, 357
BstMBI	GATC	3 cut(s)	84, 213, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	2 cut(s)	71, 624
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	69, 622
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	2 cut(s)	206, 308
BstV1I	GCAGC	3 cut(s)	391, 522, 605
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	2 cut(s)	84, 213
BstXI	CCANNNNNNTGG	1 cut(s)	375
BstYI	RGATCY	2 cut(s)	84, 213
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	219, 325, 363, 558
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	603
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	2 cut(s)	206, 310
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	3 cut(s)	244, 334, 397
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	3 cut(s)	99, 420, 671
DpnI	GATC	3 cut(s)	86, 215, 356
DpnII	GATC	3 cut(s)	84, 213, 354
DriI	GACNNNNNGTC	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	3 cut(s)	68, 245, 709
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	69, 622
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	247, 337, 400
FaiI	YATR	7 cut(s)	126, 227, 245, 335, 398, 460, 510
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	243, 333, 396
FauI	CCCGC	3 cut(s)	38, 199, 223
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	380, 536, 594
FokI	GGATG	4 cut(s)	206, 332, 350, 565
Fsp4HI	GCNGC	3 cut(s)	380, 536, 594
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	2 cut(s)	205, 309
GluI	GCNGC	3 cut(s)	380, 536, 594
GsaI	CCCAGC	2 cut(s)	203, 319
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	475, 539
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	206, 310
Hin1II	CATG	3 cut(s)	247, 337, 400
Hin6I	GCGC	2 cut(s)	204, 308
HinP1I	GCGC	2 cut(s)	204, 308
HinfI	GANTC	5 cut(s)	59, 116, 256, 422, 633
HpaII	CCGG	2 cut(s)	475, 539
HphI	GGTGA	3 cut(s)	121, 417, 674
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	55, 213
Hpy188III	TCNNGA	3 cut(s)	82, 244, 352
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	56, 241, 523
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	3 cut(s)	99, 420, 671
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	247, 337, 400
HspAI	GCGC	2 cut(s)	204, 308
Kzo9I	GATC	3 cut(s)	84, 213, 354
LmnI	GCTCC	3 cut(s)	155, 176, 446
Lsp1109I	GCAGC	3 cut(s)	391, 522, 605
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	295, 423
MalI	GATC	3 cut(s)	86, 215, 356
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	3 cut(s)	84, 213, 354
MboII	GAAGA	5 cut(s)	34, 130, 403, 665, 693
MflI	RGATCY	2 cut(s)	84, 213
MluCI	AATT	7 cut(s)	410, 445, 488, 512, 524, 571, 677
MlyI	GAGTC	4 cut(s)	68, 110, 431, 642
MmeI	TCCRAC	1 cut(s)	191
MseI	TTAA	2 cut(s)	180, 492
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	475, 539
MspR9I	CCNGG	2 cut(s)	71, 624
MvaI	CCWGG	2 cut(s)	71, 624
MvnI	CGCG	2 cut(s)	206, 308
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	3 cut(s)	84, 213, 354
NlaIII	CATG	3 cut(s)	247, 337, 400
NlaIV	GGNNCC	3 cut(s)	215, 304, 442
NmeAIII	GCCGAG	2 cut(s)	15, 631
NmuCI	GTSAC	2 cut(s)	295, 423
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	251
PciI	ACATGT	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	381, 537, 595
PleI	GAGTC	4 cut(s)	67, 110, 430, 641
PpsI	GAGTC	4 cut(s)	67, 110, 430, 641
PpuMI	RGGWCCY	1 cut(s)	73
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	69, 622
PspFI	CCCAGC	2 cut(s)	199, 315
PspGI	CCWGG	2 cut(s)	69, 622
PspN4I	GGNNCC	3 cut(s)	215, 304, 442
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	84, 213
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SaqAI	TTAA	2 cut(s)	180, 492
SatI	GCNGC	3 cut(s)	380, 536, 594
Sau3AI	GATC	3 cut(s)	84, 213, 354
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	4 cut(s)	68, 110, 431, 642
ScrFI	CCNGG	2 cut(s)	71, 624
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	7 cut(s)	410, 445, 488, 512, 524, 571, 677
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	8 cut(s)	31, 148, 164, 206, 230, 267, 306, 463
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	69, 622
StyI	CCWWGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	4 cut(s)	21, 81, 273, 408
TasI	AATT	7 cut(s)	410, 445, 488, 512, 524, 571, 677
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	180, 492
Tru9I	TTAA	2 cut(s)	180, 492
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	295, 423
TseI	GCWGC	3 cut(s)	379, 535, 593
Tsp45I	GTSAC	2 cut(s)	295, 423
TspDTI	ATGAA	2 cut(s)	260, 413
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	73
XagI	CCTNNNNNAGG	3 cut(s)	68, 245, 709
XapI	RAATTY	3 cut(s)	410, 488, 571
XceI	RCATGY	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.