Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

40004522 .. 40015098

Gene Structure 10577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCTTCAGAAATTGAAAGAGGTATTGAAGGTGTTGCCAAAGATTAGGGTGATGGAGGAGTTTGATGAGAATCCGGTGGAGGGATTTGGTGTAGCTTTGCTCGCTAGGTATGAGTGGCAACCAGGACAAGGAGTTGGTAAGAACGCAAAGGAAGATGTTGTTAGCCGCTATAAACTTAATGTTGTTAAAGGTTATCCTTATAGGTTTTACTATTCACCTTTGATTAGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

77

Amino Acids

8.96

Weight (kDa)

9.43

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	16 - 53	4.6e-10	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	80, 128
AgsI	TTSAA	2 cut(s)	16, 28
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	61, 207
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 128
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	80, 128
BseRI	GAGGAG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	80, 128
BspACI	CCGC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	102
CviJI	RGCY	2 cut(s)	95, 165
CviKI_1	RGCY	2 cut(s)	95, 165
EcoRII	CCWGG	1 cut(s)	121
FaiI	YATR	4 cut(s)	111, 171, 201, 232
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	166
HapII	CCGG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	61, 207
Hpy188I	TCNGA	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	87, 108, 135
MaeI	CTAG	1 cut(s)	105
MboII	GAAGA	1 cut(s)	164
MluCI	AATT	1 cut(s)	11
MnlI	CCTC	3 cut(s)	13, 49, 73
MseI	TTAA	2 cut(s)	177, 186
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	177, 186
SatI	GCNGC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	7 cut(s)	24, 33, 97, 110, 193, 206, 220
SgeI	CNNG	6 cut(s)	86, 113, 117, 134, 135, 140
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	121
TasI	AATT	1 cut(s)	11
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	177, 186
Tru9I	TTAA	2 cut(s)	177, 186
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.