Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006923

Physical Location & Seq

Genomic Coordinates Reverse (-)

16983972 .. 16988278

Gene Structure 4307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23882.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAGCAAGCTTCGCCACCCCGAAACGATTTTTTCTACCACATCTCAGTCTCCGGCGAGCCCAGCCGGAAAAGAAAGCTCCGGGAGGATTATCATATGAGCGTCGCGGTTACCTGGGACGTGACGCGGACCTGCTACTGCTCCGACGATCGCACACTGCCGATCGTGGATTTGGATTCCCGGACGGCGACGTTCGACGATCTGGAATATCGGGTGTTCACGATGATCGACGACGACGATATTGGCGTGGTGGATAAGATGATAACCTGCATTGGGCGCCTTATTAAATTTTACGACGGCGTGTCGTTTGATGAGATTAACGAGATGGTGCACCGAATCCGACGCGTCGTTGATGAGGCTAATCGGTCTGGGAGACCACGAATGGAGAAATTGAATGTGATGGTGACGCTGAAAAATGAAACCGGGTTGACATTGGAGGACTACGAAGCCGTGCTTCGGGACAATCAAGAGTCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.58

Weight (kDa)

4.9

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23882 FvH4_3g24160 FvH4_5g01275
rosa_roxburghii	Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500
rosa_rugosa	Rorug01G0203800 Rorug05G0204700 Rorug07G0055700
rosa_samantha	Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900
rosa_wichuraiana	Rw5G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	140, 275
AccB1I	GGYRCC	1 cut(s)	276
AccII	CGCG	3 cut(s)	107, 127, 345
AciI	CCGC	2 cut(s)	107, 127
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	273, 456
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	394
AhdI	GACNNNNNGTC	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	2 cut(s)	11, 79
AluI	AGCT	2 cut(s)	11, 79
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	55, 367
Alw44I	GTGCAC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	3 cut(s)	83, 181, 424
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	319, 394
BceAI	ACGGC	3 cut(s)	201, 313, 434
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	3 cut(s)	83, 181, 424
BcoDI	GTCTC	2 cut(s)	55, 367
BfoI	RGCGCY	1 cut(s)	280
BfuAI	ACCTGC	2 cut(s)	140, 275
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	4 cut(s)	83, 115, 181, 424
Bme18I	GGWCC	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	4 cut(s)	83, 115, 181, 424
BpuMI	CCSGG	3 cut(s)	83, 181, 424
BsaHI	GRCGYC	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 456
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	273, 456
BseMII	CTCAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	62
Bsh1236I	CGCG	3 cut(s)	107, 127, 345
Bsh1285I	CGRYCG	2 cut(s)	151, 165
BshNI	GGYRCC	1 cut(s)	276
BsiEI	CGRYCG	2 cut(s)	151, 165
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	5 cut(s)	54, 67, 82, 181, 423
BslFI	GGGAC	2 cut(s)	131, 473
BslI	CCNNNNNNNGG	2 cut(s)	273, 456
BsmAI	GTCTC	2 cut(s)	55, 367
BsmFI	GGGAC	2 cut(s)	131, 473
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	63, 333
Bsp143I	GATC	4 cut(s)	148, 162, 199, 225
BspACI	CCGC	2 cut(s)	107, 127
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	3 cut(s)	107, 127, 345
BspLI	GGNNCC	1 cut(s)	278
BspMI	ACCTGC	2 cut(s)	140, 275
BspT107I	GGYRCC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	148, 162, 199, 225
BssNI	GRCGYC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	9, 59
BstDEI	CTNAG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	109
BstFNI	CGCG	3 cut(s)	107, 127, 345
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	151, 165, 202, 228
BstMAI	GTCTC	2 cut(s)	55, 367
BstMBI	GATC	4 cut(s)	148, 162, 199, 225
BstMCI	CGRYCG	2 cut(s)	151, 165
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 63, 276
BstNI	CCWGG	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	81, 113, 179, 422
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	3 cut(s)	107, 127, 345
BstV1I	GCAGC	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	2 cut(s)	140, 275
Cac8I	GCNNGC	2 cut(s)	9, 59
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	5 cut(s)	91, 133, 334, 351, 415
CviJI	RGCY	6 cut(s)	11, 61, 66, 79, 359, 449
CviKI_1	RGCY	6 cut(s)	11, 61, 66, 79, 359, 449
DdeI	CTNAG	1 cut(s)	46
DinI	GGCGCC	1 cut(s)	278
DpnI	GATC	4 cut(s)	150, 164, 201, 227
DpnII	GATC	4 cut(s)	148, 162, 199, 225
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	278
EheI	GGCGCC	1 cut(s)	278
FaiI	YATR	2 cut(s)	96, 98
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	131, 473
FauNDI	CATATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	5 cut(s)	54, 67, 82, 181, 423
HgaI	GACGC	5 cut(s)	91, 133, 334, 351, 415
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	3 cut(s)	176, 336, 470
HpaII	CCGG	5 cut(s)	54, 67, 82, 181, 423
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	219, 331, 429
Hpy188I	TCNGA	2 cut(s)	145, 341
Hpy188III	TCNNGA	4 cut(s)	203, 220, 458, 467
Hpy8I	GTNNAC	3 cut(s)	219, 331, 429
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	2 cut(s)	120, 191
HpyCH4V	TGCA	3 cut(s)	4, 270, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 63, 276
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	2 cut(s)	120, 191
Hsp92I	GRCGYC	1 cut(s)	277
HspAI	GCGC	1 cut(s)	277
KasI	GGCGCC	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	148, 162, 199, 225
LmnI	GCTCC	2 cut(s)	84, 146
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	120, 191
MaeIII	GTNAC	4 cut(s)	109, 121, 403, 471
MalI	GATC	4 cut(s)	150, 164, 201, 227
MboI	GATC	4 cut(s)	148, 162, 199, 225
MhlI	GDGCHC	2 cut(s)	63, 333
MluCI	AATT	2 cut(s)	287, 389
MluI	ACGCGT	1 cut(s)	343
Mly113I	GGCGCC	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	168, 364
MnlI	CCTC	3 cut(s)	79, 349, 430
MseI	TTAA	2 cut(s)	285, 318
MspI	CCGG	5 cut(s)	54, 67, 82, 181, 423
MspR9I	CCNGG	4 cut(s)	83, 115, 181, 424
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	3 cut(s)	107, 127, 345
MwoI	GCNNNNNNNGC	3 cut(s)	13, 63, 276
NarI	GGCGCC	1 cut(s)	277
NciI	CCSGG	3 cut(s)	83, 181, 424
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	4 cut(s)	148, 162, 199, 225
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	3 cut(s)	121, 403, 471
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 243
PfeI	GAWTC	2 cut(s)	176, 336
PfoI	TCCNGGA	2 cut(s)	81, 179
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	2 cut(s)	151, 165
PleI	GAGTC	1 cut(s)	478
PluTI	GGCGCC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	129
PvuI	CGATCG	2 cut(s)	151, 165
SaqAI	TTAA	2 cut(s)	285, 318
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	148, 162, 199, 225
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	4 cut(s)	83, 115, 181, 424
SduI	GDGCHC	2 cut(s)	63, 333
SetI	ASST	7 cut(s)	13, 81, 116, 123, 134, 194, 269
SfoI	GGCGCC	1 cut(s)	278
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	2 cut(s)	287, 389
SsiI	CCGC	2 cut(s)	107, 127
SspDI	GGCGCC	1 cut(s)	276
StyD4I	CCNGG	4 cut(s)	81, 113, 179, 422
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	2 cut(s)	123, 194
TaqI	TCGA	2 cut(s)	195, 228
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	287, 389
TfiI	GAWTC	2 cut(s)	176, 336
Tru1I	TTAA	2 cut(s)	285, 318
Tru9I	TTAA	2 cut(s)	285, 318
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	3 cut(s)	121, 403, 471
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	3 cut(s)	121, 403, 471
TspDTI	ATGAA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	162
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.