No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23882 FvH4_3g24160 FvH4_5g01275 |
| rosa_roxburghii | Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500 |
| rosa_rugosa | Rorug01G0203800 Rorug05G0204700 Rorug07G0055700 |
| rosa_samantha | Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900 |
| rosa_wichuraiana | Rw5G026500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 224 |
| AclWI | GGATC | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 116 |
| AhlI | ACTAGT | 1 cut(s) | 143 |
| AluBI | AGCT | 2 cut(s) | 35, 64 |
| AluI | AGCT | 2 cut(s) | 35, 64 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 2 cut(s) | 204, 228 |
| Alw44I | GTGCAC | 1 cut(s) | 5 |
| AlwI | GGATC | 1 cut(s) | 151 |
| Ama87I | CYCGRG | 1 cut(s) | 107 |
| ApaLI | GTGCAC | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 36 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 94 |
| AvaI | CYCGRG | 1 cut(s) | 107 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BceAI | ACGGC | 1 cut(s) | 32 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 2 cut(s) | 204, 228 |
| BcuI | ACTAGT | 1 cut(s) | 143 |
| BfaI | CTAG | 3 cut(s) | 144, 176, 207 |
| BisI | GCNGC | 1 cut(s) | 225 |
| BlsI | GCNGC | 1 cut(s) | 226 |
| Bme1390I | CCNGG | 1 cut(s) | 161 |
| BmeT110I | CYCGRG | 1 cut(s) | 107 |
| BmrFI | CCNGG | 1 cut(s) | 161 |
| BmrI | ACTGGG | 1 cut(s) | 105 |
| BmuI | ACTGGG | 1 cut(s) | 105 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| Bse1I | ACTGG | 1 cut(s) | 100 |
| BseGI | GGATG | 1 cut(s) | 73 |
| BseNI | ACTGG | 1 cut(s) | 100 |
| BseRI | GAGGAG | 1 cut(s) | 125 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BsiHKCI | CYCGRG | 1 cut(s) | 107 |
| BsiSI | CCGG | 1 cut(s) | 160 |
| BsmAI | GTCTC | 2 cut(s) | 204, 228 |
| BsoBI | CYCGRG | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 1 cut(s) | 156 |
| BspACI | CCGC | 1 cut(s) | 224 |
| BspPI | GGATC | 1 cut(s) | 151 |
| BsrI | ACTGG | 1 cut(s) | 100 |
| BssMI | GATC | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 3 cut(s) | 76, 82, 239 |
| BstC8I | GCNNGC | 1 cut(s) | 136 |
| BstF5I | GGATG | 1 cut(s) | 73 |
| BstKTI | GATC | 1 cut(s) | 159 |
| BstMAI | GTCTC | 2 cut(s) | 204, 228 |
| BstMBI | GATC | 1 cut(s) | 156 |
| BstSCI | CCNGG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BtsCI | GGATG | 1 cut(s) | 73 |
| BtsI | GCAGTG | 1 cut(s) | 122 |
| BtsIMutI | CAGTG | 1 cut(s) | 122 |
| Cac8I | GCNNGC | 1 cut(s) | 136 |
| Csp6I | GTAC | 1 cut(s) | 115 |
| CviJI | RGCY | 2 cut(s) | 35, 64 |
| CviKI_1 | RGCY | 2 cut(s) | 35, 64 |
| CviQI | GTAC | 1 cut(s) | 115 |
| DpnI | GATC | 1 cut(s) | 158 |
| DpnII | GATC | 1 cut(s) | 156 |
| Eco88I | CYCGRG | 1 cut(s) | 107 |
| FaiI | YATR | 1 cut(s) | 219 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 111, 143 |
| Fnu4HI | GCNGC | 1 cut(s) | 225 |
| FokI | GGATG | 1 cut(s) | 80 |
| Fsp4HI | GCNGC | 1 cut(s) | 225 |
| FspBI | CTAG | 3 cut(s) | 144, 176, 207 |
| GluI | GCNGC | 1 cut(s) | 225 |
| HapII | CCGG | 1 cut(s) | 160 |
| HindIII | AAGCTT | 1 cut(s) | 33 |
| HinfI | GANTC | 1 cut(s) | 200 |
| HpaII | CCGG | 1 cut(s) | 160 |
| HphI | GGTGA | 2 cut(s) | 88, 94 |
| Hpy166II | GTNNAC | 1 cut(s) | 7 |
| Hpy188III | TCNNGA | 1 cut(s) | 207 |
| Hpy8I | GTNNAC | 1 cut(s) | 7 |
| Hpy99I | CGWCG | 1 cut(s) | 29 |
| HpyCH4III | ACNGT | 3 cut(s) | 76, 82, 239 |
| HpyCH4V | TGCA | 1 cut(s) | 7 |
| Kzo9I | GATC | 1 cut(s) | 156 |
| LpnPI | CCDG | 5 cut(s) | 30, 50, 81, 173, 215 |
| MaeI | CTAG | 3 cut(s) | 144, 176, 207 |
| MaeIII | GTNAC | 2 cut(s) | 70, 76 |
| MalI | GATC | 1 cut(s) | 158 |
| MboI | GATC | 1 cut(s) | 156 |
| MboII | GAAGA | 1 cut(s) | 195 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MnlI | CCTC | 1 cut(s) | 103 |
| MroXI | GAANNNNTTC | 1 cut(s) | 36 |
| MspA1I | CMGCKG | 1 cut(s) | 224 |
| MspI | CCGG | 1 cut(s) | 160 |
| MspR9I | CCNGG | 1 cut(s) | 161 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NdeII | GATC | 1 cut(s) | 156 |
| NmuCI | GTSAC | 1 cut(s) | 76 |
| PaeR7I | CTCGAG | 1 cut(s) | 107 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 46, 114 |
| PdmI | GAANNNNTTC | 1 cut(s) | 36 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 1 cut(s) | 226 |
| PspXI | VCTCGAGB | 1 cut(s) | 107 |
| RsaI | GTAC | 1 cut(s) | 116 |
| RsaNI | GTAC | 1 cut(s) | 115 |
| SatI | GCNGC | 1 cut(s) | 225 |
| Sau3AI | GATC | 1 cut(s) | 156 |
| ScrFI | CCNGG | 1 cut(s) | 161 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 2 cut(s) | 37, 66 |
| Sfr274I | CTCGAG | 1 cut(s) | 107 |
| SlaI | CTCGAG | 1 cut(s) | 107 |
| SmlI | CTYRAG | 1 cut(s) | 107 |
| SmoI | CTYRAG | 1 cut(s) | 107 |
| SpeI | ACTAGT | 1 cut(s) | 143 |
| SsiI | CCGC | 1 cut(s) | 224 |
| SspMI | CTAG | 3 cut(s) | 144, 176, 207 |
| StyD4I | CCNGG | 1 cut(s) | 159 |
| TaaI | ACNGT | 3 cut(s) | 76, 82, 239 |
| TaqI | TCGA | 2 cut(s) | 27, 108 |
| TaqII | GACCGA | 1 cut(s) | 30 |
| TauI | GCSGC | 1 cut(s) | 227 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TseFI | GTSAC | 1 cut(s) | 76 |
| Tsp45I | GTSAC | 1 cut(s) | 76 |
| TspDTI | ATGAA | 3 cut(s) | 45, 209, 213 |
| TspRI | CASTG | 1 cut(s) | 129 |
| VneI | GTGCAC | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 206 |
| XhoI | CTCGAG | 1 cut(s) | 107 |
| XmnI | GAANNNNTTC | 1 cut(s) | 36 |
| XspI | CTAG | 3 cut(s) | 144, 176, 207 |