Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006923

Physical Location & Seq

Genomic Coordinates Forward (+)

39754012 .. 39762636

Gene Structure 8625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCAAACCCTAAATCACAACAACCACGAAGAAGAGTACTTCCCTTCCGCGACTCACTGCGATTACGACTTCGCTTACCAGATCTGTGTCGCCGACGACCACCACGATCTTGATCTTGACCTAATTCCCACCAAGAAGCGAAAATCGCGACACGACGACGACTGGAAGGTCTCGATCGTCTGGAACGTGATCAGAAGCTTTTACTGTTCCGACGACCGCAAGCGGCCGATCGTGGACGTCGATTTCAAAACGGCGACGTTTCGCGATATGGAATTTTGGCTGTTTACGGAAACTGACGAGAATGGGGTTGGAGTCATCGACAGGATGTTGACCGTAATTGGGCGTATCGTTGAGGACGGCGTGCCGTTTGACGACGTCGAAGAGATGATTGCGCAAATACGGCGCGTCGTTTGTGCGGCTGTGAGGTCGGGAAGGCGGAAGGAGAATCTGGATATAATGGTCACGGTTCGAAACCAGTCTGGGTTGCCGCGAAGAGAATATGAAGCAATGAACTCTTTTGATAAAATCTCAATCAACACACGTTTCCAATGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

21.78

Weight (kDa)

5.13

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23882 FvH4_3g24160 FvH4_5g01275
rosa_roxburghii	Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500
rosa_rugosa	Rorug01G0203800 Rorug05G0204700 Rorug07G0055700
rosa_samantha	Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900
rosa_wichuraiana	Rw5G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	240, 378
Acc16I	TGCGCA	1 cut(s)	393
AccII	CGCG	5 cut(s)	50, 148, 264, 405, 490
AciI	CCGC	6 cut(s)	48, 217, 223, 416, 436, 488
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	237, 375
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	394, 405
AsuII	TTCGAA	1 cut(s)	469
BceAI	ACGGC	4 cut(s)	267, 349, 373, 416
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	3 cut(s)	224, 417, 488
BlsI	GCNGC	3 cut(s)	225, 418, 489
BmcAI	AGTACT	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	2 cut(s)	237, 375
BsaI	GGTCTC	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	167, 475
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	167, 475
BseX3I	CGGCCG	1 cut(s)	224
Bsh1236I	CGCG	5 cut(s)	50, 148, 264, 405, 490
Bsh1285I	CGRYCG	4 cut(s)	177, 217, 227, 231
BshFI	GGCC	1 cut(s)	226
BsiEI	CGRYCG	4 cut(s)	177, 217, 227, 231
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	469
Bsp143I	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
Bsp68I	TCGCGA	2 cut(s)	148, 264
BspACI	CCGC	6 cut(s)	48, 217, 223, 416, 436, 488
BspANI	GGCC	1 cut(s)	226
BspFNI	CGCG	5 cut(s)	50, 148, 264, 405, 490
BspT104I	TTCGAA	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	167, 475
BssMI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
BssNI	GRCGYC	2 cut(s)	237, 375
Bst4CI	ACNGT	3 cut(s)	206, 334, 466
Bst6I	CTCTTC	3 cut(s)	27, 375, 487
BstACI	GRCGYC	2 cut(s)	237, 375
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	221, 362
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	5 cut(s)	50, 148, 264, 405, 490
BstHHI	GCGC	2 cut(s)	394, 405
BstKTI	GATC	6 cut(s)	84, 109, 115, 177, 192, 231
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
BstMCI	CGRYCG	4 cut(s)	177, 217, 227, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 400
BstUI	CGCG	5 cut(s)	50, 148, 264, 405, 490
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BstZI	CGGCCG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
BtuMI	TCGCGA	2 cut(s)	148, 264
Cac8I	GCNNGC	2 cut(s)	221, 362
CfoI	GCGC	2 cut(s)	394, 405
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	37
CviJI	RGCY	4 cut(s)	198, 226, 280, 419
CviKI_1	RGCY	4 cut(s)	198, 226, 280, 419
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	6 cut(s)	83, 108, 114, 176, 191, 230
DpnII	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	224
EagI	CGGCCG	1 cut(s)	224
Eam1104I	CTCTTC	3 cut(s)	27, 375, 487
EarI	CTCTTC	3 cut(s)	27, 375, 487
EciI	GGCGGA	1 cut(s)	451
EclXI	CGGCCG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	175
Eco52I	CGGCCG	1 cut(s)	224
FaiI	YATR	3 cut(s)	269, 455, 501
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	224, 417, 488
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	224, 417, 488
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	2 cut(s)	393, 404
GluI	GCNGC	3 cut(s)	224, 417, 488
HaeIII	GGCC	1 cut(s)	226
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	394, 405
Hin1I	GRCGYC	2 cut(s)	237, 375
Hin6I	GCGC	2 cut(s)	392, 403
HinP1I	GCGC	2 cut(s)	392, 403
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	52, 312, 445
Hpy166II	GTNNAC	3 cut(s)	235, 285, 330
Hpy188I	TCNGA	2 cut(s)	194, 211
Hpy188III	TCNNGA	8 cut(s)	110, 116, 147, 172, 181, 263, 429, 449
Hpy8I	GTNNAC	3 cut(s)	235, 285, 330
Hpy99I	CGWCG	9 cut(s)	98, 158, 161, 215, 242, 259, 377, 380, 410
HpyAV	CCTTC	4 cut(s)	54, 160, 426, 433
HpyCH4III	ACNGT	3 cut(s)	206, 334, 466
HpyCH4IV	ACGT	5 cut(s)	186, 237, 257, 375, 541
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 400
HpySE526I	ACGT	5 cut(s)	186, 237, 257, 375, 541
Hsp92I	GRCGYC	2 cut(s)	237, 375
HspAI	GCGC	2 cut(s)	392, 403
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
LpnPI	CCDG	7 cut(s)	92, 148, 166, 307, 434, 465, 488
MaeII	ACGT	5 cut(s)	186, 237, 257, 375, 541
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	6 cut(s)	83, 108, 114, 176, 191, 230
MboI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
MboII	GAAGA	4 cut(s)	41, 44, 392, 504
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	3 cut(s)	123, 272, 336
MlyI	GAGTC	2 cut(s)	46, 321
MmeI	TCCRAC	2 cut(s)	234, 289
MnlI	CCTC	2 cut(s)	346, 417
MvnI	CGCG	5 cut(s)	50, 148, 264, 405, 490
MwoI	GCNNNNNNNGC	2 cut(s)	145, 400
NdeII	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
NmuCI	GTSAC	1 cut(s)	460
NruI	TCGCGA	2 cut(s)	148, 264
NsbI	TGCGCA	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 183, 237
PfeI	GAWTC	1 cut(s)	445
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	225, 418, 489
Ple19I	CGATCG	2 cut(s)	177, 231
PleI	GAGTC	2 cut(s)	46, 320
PpsI	GAGTC	2 cut(s)	46, 320
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	374
PvuI	CGATCG	2 cut(s)	177, 231
RruI	TCGCGA	2 cut(s)	148, 264
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SatI	GCNGC	3 cut(s)	224, 417, 488
Sau3AI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	2 cut(s)	46, 321
SetI	ASST	9 cut(s)	123, 171, 189, 200, 240, 260, 378, 428, 544
SfuI	TTCGAA	1 cut(s)	469
Sse9I	AATT	3 cut(s)	123, 272, 336
SsiI	CCGC	6 cut(s)	48, 217, 223, 416, 436, 488
TaaI	ACNGT	3 cut(s)	206, 334, 466
TaiI	ACGT	5 cut(s)	189, 240, 260, 378, 544
TaqI	TCGA	5 cut(s)	173, 240, 318, 378, 469
TasI	AATT	3 cut(s)	123, 272, 336
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	3 cut(s)	226, 419, 490
TfiI	GAWTC	1 cut(s)	445
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	516, 524
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	272
ZraI	GACGTC	2 cut(s)	238, 376
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.