Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006923

Physical Location & Seq

Genomic Coordinates Reverse (-)

3945688 .. 3947623

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGGGATTACCAAGTGTAAAAGAAGCACATTGTTTGCATCTCTCATGGCTTTGGCAATATTTTCTTCTGCAGTGGCTTATGATCCTTTTGATCCTTCTGGAAGCATAAATATCAAGTGGGATGTTTTGTCTTGGACCCCCGATGGCTATGTGGCAGCAGTGTCAATAAGCAACAACCAAATGTACCGGCAAATCACAAGCCCGGGATGGAGCTTAGGATGGACATGGGCAAAGAAGGAAGTGATCTGGTCCATGGTGGGAGCTAAAGTGACCGATCAAGGGGACTGTTCGAAATTCAAAGGGAACACCCCACTTTGTTGTGAGAAAACTCCTACAGTTATTGACTTGCTTCCCGGAGCTCCTTACAACCAACAGTTCACCAATTGCTGCAAGGGTGGTGTTTTGACATCATTGGGACAAGACCCTTCTACTGCAGTCGCAGCATTTCAGATCAGTGTTGGCTTTGCAGGCACTTCAAATAAAACAGTAAAGCCTCCTAAGAAATTCTTTTTGCTTGGTCCTGGACCAGGCTATACTTGTAGTGCCGCGAACATTGTGCCATCCTCGGTTTCCTTGTCACCTGATGGCCGAAGTAAAACTCGAGCAATGATGACATGGAGTTTGACTTGCACTTACTCACAATTGCTGGCCTCTAAAAGCCCAAAGTGCTGTGTGTCTCTGTCTTCCTTCTACAACCCCTTGATCACTCCTTGTCCATCTTGTGCTTGTGGTTGTAACGATGCAAATAATTGTGTGAATGACCTCAAGGATTCAAGTCTGCTACAATCAAAAACCTCAGCCAAGGAAAATGCACCACAACTGTTACAATGCACAGAACACAAGTGCCCAATCCGAGTTCATTGGCATGTGAAAGCTAACTACAGAGAGTATTGGCGTGTGAAAATTACCATCACCAATTTTAACTTCCTCATGAATTACACACAATGGACACTAGTTGTCCAGCACCCAAATCTCAACAAACTGGCCAATATATCTAGCTTTCTCTATAAGCCACTTATCCAATACAGCCCCATAAATGACACTGGCATGTTTTATGGCATAAAATCTCTTAATGAACTAATAAGGGAAGCTGGGCCTAAGGGATATATCTACACAGAGTTGATTCTTAAGAAGGACAAGGATACATTCACATTAGATCAAGGTTGGGCATTTCCTTTGAGGCTTTACTTCAATGGTGATGAGTGCGTGATGCCCCTTCCTGATCTATACCCTTATCTACCCAACTCTGCTTTCTATAATTCATATCCAGTTTCAATATCATCTTCTACACTGGCTACCTTTTTGGTTTTGGTACTGCTAGTCTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

443

Amino Acids

48.99

Weight (kDa)

8.86

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	50 - 213	3e-62	COBRA-like protein
COB_C	PF25079	222 - 411	9.2e-48	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23882 FvH4_3g24160 FvH4_5g01275
rosa_roxburghii	Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500
rosa_rugosa	Rorug01G0203800 Rorug05G0204700 Rorug07G0055700
rosa_samantha	Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900
rosa_wichuraiana	Rw5G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	548
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	2 cut(s)	77, 86
AcoI	YGGCCR	2 cut(s)	586, 984
AcsI	RAATTY	2 cut(s)	293, 503
AfaI	GTAC	2 cut(s)	185, 1314
AfiI	CCNNNNNNNGG	2 cut(s)	279, 527
AflII	CTTAAG	1 cut(s)	1127
AgsI	TTSAA	5 cut(s)	298, 477, 774, 1192, 1275
AhlI	ACTAGT	1 cut(s)	952
AjnI	CCWGG	2 cut(s)	520, 526
AjuI	GAANNNNNNNTTGG	4 cut(s)	908, 940, 1235, 1267
AluBI	AGCT	6 cut(s)	213, 263, 359, 875, 999, 1091
AluI	AGCT	6 cut(s)	213, 263, 359, 875, 999, 1091
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	2 cut(s)	77, 86
Ama87I	CYCGRG	2 cut(s)	202, 600
AoxI	GGCC	4 cut(s)	586, 648, 984, 1094
ApeKI	GCWGC	3 cut(s)	155, 387, 440
ApoI	RAATTY	2 cut(s)	293, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
AspS9I	GGNCC	5 cut(s)	135, 249, 518, 524, 1094
AsuC2I	CCSGG	3 cut(s)	203, 204, 354
AsuHPI	GGTGA	4 cut(s)	370, 570, 904, 1208
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	2 cut(s)	202, 600
AvaII	GGWCC	4 cut(s)	135, 249, 518, 524
AxyI	CCTNAGG	1 cut(s)	1098
BaeGI	GKGCMC	1 cut(s)	848
BalI	TGGCCA	1 cut(s)	986
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	796
BbvI	GCAGC	3 cut(s)	167, 374, 452
BccI	CCATC	7 cut(s)	137, 201, 213, 568, 578, 724, 917
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BciT130I	CCWGG	2 cut(s)	522, 528
BciVI	GTATCC	1 cut(s)	1135
BclI	TGATCA	1 cut(s)	702
BcnI	CCSGG	3 cut(s)	203, 204, 354
BcoDI	GTCTC	1 cut(s)	681
BcuI	ACTAGT	1 cut(s)	952
BfaI	CTAG	3 cut(s)	953, 996, 1319
BfmI	CTRYAG	4 cut(s)	69, 333, 432, 880
BfrI	CTTAAG	1 cut(s)	1127
BfuI	GTATCC	1 cut(s)	1135
BisI	GCNGC	4 cut(s)	156, 388, 441, 546
BlsI	GCNGC	4 cut(s)	157, 389, 442, 547
Bme1390I	CCNGG	5 cut(s)	203, 204, 354, 522, 528
Bme18I	GGWCC	4 cut(s)	135, 249, 518, 524
BmeT110I	CYCGRG	2 cut(s)	202, 600
BmgT120I	GGNCC	5 cut(s)	135, 249, 518, 524, 1094
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	5 cut(s)	203, 204, 354, 522, 528
BmsI	GCATC	3 cut(s)	47, 730, 1200
BpiI	GAAGAC	1 cut(s)	675
Bpu10I	CCTNAGC	2 cut(s)	214, 796
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	3 cut(s)	203, 204, 354
BsaJI	CCNNGG	4 cut(s)	202, 252, 564, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 527
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	4 cut(s)	987, 1048, 1268, 1296
Bse21I	CCTNAGG	1 cut(s)	1098
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	522, 528
BseDI	CCNNGG	4 cut(s)	202, 252, 564, 801
BseGI	GGATG	4 cut(s)	127, 212, 224, 560
BseLI	CCNNNNNNNGG	2 cut(s)	279, 527
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	4 cut(s)	987, 1048, 1268, 1296
BseSI	GKGCMC	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	167, 374, 452
BseYI	CCCAGC	1 cut(s)	1091
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	4 cut(s)	588, 650, 986, 1096
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	2 cut(s)	202, 600
BsiSI	CCGG	3 cut(s)	187, 203, 354
BslFI	GGGAC	2 cut(s)	296, 429
BslI	CCNNNNNNNGG	2 cut(s)	279, 527
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	296, 429
BsnI	GGCC	4 cut(s)	588, 650, 986, 1096
BsoBI	CYCGRG	2 cut(s)	202, 600
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	361, 848
Bsp143I	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	4 cut(s)	588, 650, 986, 1096
BspCNI	CTCAG	1 cut(s)	809
BspFNI	CGCG	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	2 cut(s)	73, 436
BspPI	GGATC	2 cut(s)	77, 86
BspT104I	TTCGAA	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	1127
BsrDI	GCAATG	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	4 cut(s)	987, 1048, 1268, 1296
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	202, 252, 564, 801
BssMI	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
BssT1I	CCWWGG	2 cut(s)	252, 801
Bst2UI	CCWGG	2 cut(s)	522, 528
Bst4CI	ACNGT	5 cut(s)	287, 337, 375, 487, 822
BstAFI	CTTAAG	1 cut(s)	1127
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	469, 648
BstDEI	CTNAG	4 cut(s)	214, 498, 796, 1098
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	4 cut(s)	127, 212, 224, 560
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	8 cut(s)	85, 94, 246, 277, 453, 705, 1159, 1225
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 468, 666
BstNI	CCWGG	2 cut(s)	522, 528
BstNSI	RCATGY	2 cut(s)	869, 1051
BstSCI	CCNGG	5 cut(s)	201, 202, 352, 520, 526
BstSFI	CTRYAG	4 cut(s)	69, 333, 432, 880
BstSLI	GKGCMC	1 cut(s)	848
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	3 cut(s)	167, 374, 452
BstV2I	GAAGAC	1 cut(s)	675
Bsu36I	CCTNAGG	1 cut(s)	1098
BsuI	GTATCC	1 cut(s)	1135
BsuRI	GGCC	4 cut(s)	588, 650, 986, 1096
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	127, 212, 224, 560
BtsI	GCAGTG	2 cut(s)	78, 165
BtsIMutI	CAGTG	5 cut(s)	78, 165, 460, 1041, 1289
Cac8I	GCNNGC	2 cut(s)	469, 648
CciI	TCATGA	1 cut(s)	930
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	5 cut(s)	135, 249, 518, 524, 1094
Cfr9I	CCCGGG	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	184, 1313
CviAII	CATG	7 cut(s)	46, 225, 253, 615, 866, 931, 1048
CviQI	GTAC	2 cut(s)	184, 1313
DdeI	CTNAG	4 cut(s)	214, 498, 796, 1098
DpnI	GATC	8 cut(s)	84, 93, 245, 276, 452, 704, 1158, 1224
DpnII	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
EaeI	YGGCCR	2 cut(s)	586, 984
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	252, 801
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	4 cut(s)	135, 249, 518, 524
Eco53kI	GAGCTC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	1098
Eco88I	CYCGRG	2 cut(s)	202, 600
EcoICRI	GAGCTC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	520, 526
EcoT14I	CCWWGG	2 cut(s)	252, 801
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	252, 801
FaeI	CATG	7 cut(s)	49, 228, 256, 618, 869, 934, 1051
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	2 cut(s)	296, 429
FatI	CATG	7 cut(s)	45, 224, 252, 614, 865, 930, 1047
FbaI	TGATCA	1 cut(s)	702
Fnu4HI	GCNGC	4 cut(s)	156, 388, 441, 546
FokI	GGATG	4 cut(s)	134, 219, 231, 547
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	4 cut(s)	156, 388, 441, 546
FspBI	CTAG	3 cut(s)	953, 996, 1319
GluI	GCNGC	4 cut(s)	156, 388, 441, 546
GsaI	CCCAGC	1 cut(s)	1095
HaeIII	GGCC	4 cut(s)	588, 650, 986, 1096
HapII	CCGG	3 cut(s)	187, 203, 354
Hin1II	CATG	7 cut(s)	49, 228, 256, 618, 869, 934, 1051
HinfI	GANTC	2 cut(s)	770, 1123
HpaII	CCGG	3 cut(s)	187, 203, 354
HphI	GGTGA	4 cut(s)	370, 570, 904, 1208
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	2 cut(s)	450, 854
Hpy188III	TCNNGA	3 cut(s)	99, 931, 1220
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	6 cut(s)	105, 229, 435, 697, 1126, 1226
HpyCH4III	ACNGT	5 cut(s)	287, 337, 375, 487, 822
HpyCH4V	TGCA	9 cut(s)	38, 71, 390, 434, 467, 630, 743, 812, 831
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 468, 666
HpyF3I	CTNAG	4 cut(s)	214, 498, 796, 1098
Hsp92II	CATG	7 cut(s)	49, 228, 256, 618, 869, 934, 1051
Ksp22I	TGATCA	1 cut(s)	702
Kzo9I	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
LmnI	GCTCC	4 cut(s)	210, 260, 356, 364
Lsp1109I	GCAGC	3 cut(s)	167, 374, 452
LweI	GCATC	3 cut(s)	47, 730, 1200
MaeI	CTAG	3 cut(s)	953, 996, 1319
MaeIII	GTNAC	4 cut(s)	268, 576, 734, 822
MalI	GATC	8 cut(s)	84, 93, 245, 276, 452, 704, 1158, 1224
MboI	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
MboII	GAAGA	3 cut(s)	57, 675, 1275
MfeI	CAATTG	2 cut(s)	382, 641
MhlI	GDGCHC	2 cut(s)	361, 848
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	9 cut(s)	293, 382, 503, 641, 748, 903, 916, 934, 1258
MluNI	TGGCCA	1 cut(s)	986
MnlI	CCTC	7 cut(s)	504, 574, 661, 773, 805, 938, 1173
Mox20I	TGGCCA	1 cut(s)	986
MscI	TGGCCA	1 cut(s)	986
MseI	TTAA	3 cut(s)	921, 1071, 1128
MslI	CAYNNNNRTG	2 cut(s)	864, 1046
Msp20I	TGGCCA	1 cut(s)	986
MspCI	CTTAAG	1 cut(s)	1127
MspI	CCGG	3 cut(s)	187, 203, 354
MspR9I	CCNGG	5 cut(s)	203, 204, 354, 522, 528
MunI	CAATTG	2 cut(s)	382, 641
MvaI	CCWGG	2 cut(s)	522, 528
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	440, 468, 666
NciI	CCSGG	3 cut(s)	203, 204, 354
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
NlaIII	CATG	7 cut(s)	49, 228, 256, 618, 869, 934, 1051
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	268, 576
NspI	RCATGY	2 cut(s)	869, 1051
NspV	TTCGAA	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	1 cut(s)	930
PfeI	GAWTC	2 cut(s)	770, 1123
PfoI	TCCNGGA	2 cut(s)	352, 520
PkrI	GCNGC	4 cut(s)	157, 389, 442, 547
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	520, 526
PspFI	CCCAGC	1 cut(s)	1091
PspGI	CCWGG	2 cut(s)	520, 526
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	5 cut(s)	135, 249, 518, 524, 1094
PspXI	VCTCGAGB	1 cut(s)	600
PstI	CTGCAG	2 cut(s)	73, 436
RsaI	GTAC	2 cut(s)	185, 1314
RsaNI	GTAC	2 cut(s)	184, 1313
RseI	CAYNNNNRTG	2 cut(s)	864, 1046
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	921, 1071, 1128
SatI	GCNGC	4 cut(s)	156, 388, 441, 546
Sau3AI	GATC	8 cut(s)	82, 91, 243, 274, 450, 702, 1156, 1222
Sau96I	GGNCC	5 cut(s)	135, 249, 518, 524, 1094
ScrFI	CCNGG	5 cut(s)	203, 204, 354, 522, 528
SduI	GDGCHC	2 cut(s)	361, 848
SfaNI	GCATC	3 cut(s)	47, 730, 1200
SfcI	CTRYAG	4 cut(s)	69, 333, 432, 880
Sfr274I	CTCGAG	1 cut(s)	600
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	4 cut(s)	135, 249, 518, 524
SlaI	CTCGAG	1 cut(s)	600
SmaI	CCCGGG	1 cut(s)	204
SmiMI	CAYNNNNRTG	2 cut(s)	864, 1046
SmlI	CTYRAG	3 cut(s)	600, 764, 1127
SmoI	CTYRAG	3 cut(s)	600, 764, 1127
SpeI	ACTAGT	1 cut(s)	952
Sse9I	AATT	9 cut(s)	293, 382, 503, 641, 748, 903, 916, 934, 1258
SsiI	CCGC	1 cut(s)	546
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	3 cut(s)	953, 996, 1319
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	5 cut(s)	201, 202, 352, 520, 526
StyI	CCWWGG	2 cut(s)	252, 801
TaaI	ACNGT	5 cut(s)	287, 337, 375, 487, 822
TaqI	TCGA	2 cut(s)	290, 601
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	9 cut(s)	293, 382, 503, 641, 748, 903, 916, 934, 1258
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	770, 1123
Tru1I	TTAA	3 cut(s)	921, 1071, 1128
Tru9I	TTAA	3 cut(s)	921, 1071, 1128
TscAI	CASTG	5 cut(s)	78, 165, 460, 1048, 1296
TseFI	GTSAC	2 cut(s)	268, 576
TseI	GCWGC	3 cut(s)	155, 387, 440
Tsp45I	GTSAC	2 cut(s)	268, 576
TspDTI	ATGAA	4 cut(s)	848, 947, 1089, 1251
TspMI	CCCGGG	1 cut(s)	202
TspRI	CASTG	5 cut(s)	78, 165, 460, 1048, 1296
Vha464I	CTTAAG	1 cut(s)	1127
VpaK11BI	GGWCC	4 cut(s)	135, 249, 518, 524
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	293, 503
XceI	RCATGY	2 cut(s)	869, 1051
XhoI	CTCGAG	1 cut(s)	600
XmaI	CCCGGG	1 cut(s)	202
XspI	CTAG	3 cut(s)	953, 996, 1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.