Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006923

Physical Location & Seq

Genomic Coordinates Forward (+)

20353757 .. 20355917

Gene Structure 2161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAAGTAACATTGGCTAGTTGGGTAGCGCTGAGCCTTGTTTTTGTTAGCATAATAGTAAGATGGGCATGGAATGTGCTGGATTGGGTTTGGCTGAAGCCGAAGAAGCTAGAAAGATGTTTGAGGGAGCAAGGCCTTCAAGGCAATTCCTACATGCAGGTTCTTTTATGGAGACTTGAAGGAGAACTCTATCCTGCTCAAACATGCAAAATCCAAACCCATGAACCTGACATAGCACCACGACTCATCCCTTTTCTCGATCAAACCGTAAAAACTTATGGTAAGAACTCTTTTTTTTGGAATGGCCCCGTACCAAGGGTGAATATTATGAATCCTGAAGATATGAAAGATGTCTTCACAAGACTTGATGATTTTCGTAGGCCAGTATTAAACCCACTTTCCAAGTTGCTAGTAACGGGTCTTGCAAGCTATGAAGGTGAAAAATGGGCTGAACACAGGAGGATTATCAACCCAACATTCCATGTAGAGAAATTAAAGCAAATGTTACCCGCCTTCCACAAAAGTTGTGATGAGATGATTAAGGAATGGGAGAGCTTGGCGTCCAAAGAGGGCTCACCATGTCTGTTGGATGTTTGGCCATCTCTACAACACTTGACGGCTGATGTGATTTCTCGAACAGCATTTGGAAGTAGTTATCAGGAAGAAGGAAAATATTTGAACTCCTTAAAGAGCAAGCAGCGCTTGTTTCTACCAACTAAGGTGAACAAGAGGATGAAGAAAATTGACAAAGAGGTAAAAGGTTCACTCAAGAGTATAATAAATAAAAGAGAGAAGGCCATTGAGGCAGGAGAAGCCTCTAAAGATGACTTATTAGGTGCACTTATGGAGTCAAAATTCAAGGACATCCAGGGTAATGGGAAGGTTCGGATGAGTATTGAAGATGTAATTGAGGAATGTAAGCTGTTTTACTTTGCTGGGCAAGAGACTACTTCAGTGTTGCTGGTTTGGACAATGATATTGTTGGAAATTTTGGAGATGGATGATGCTTTGAGAACTTGTAGGTTGAGGCGTGTGGTACACTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

349

Amino Acids

40.37

Weight (kDa)

8.81

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	86 - 328	1.3e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23882 FvH4_3g24160 FvH4_5g01275
rosa_roxburghii	Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500
rosa_rugosa	Rorug01G0203800 Rorug05G0204700 Rorug07G0055700
rosa_samantha	Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900
rosa_wichuraiana	Rw5G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AciI	CCGC	1 cut(s)	510
AcoI	YGGCCR	1 cut(s)	596
AcsI	RAATTY	2 cut(s)	854, 987
AcuI	CTGAAG	3 cut(s)	116, 357, 936
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	2 cut(s)	312, 1038
AfeI	AGCGCT	2 cut(s)	30, 701
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	140, 179, 679, 859, 899
AjnI	CCWGG	1 cut(s)	867
AluBI	AGCT	4 cut(s)	109, 429, 555, 922
AluI	AGCT	4 cut(s)	109, 429, 555, 922
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	2 cut(s)	166, 938
Alw44I	GTGCAC	1 cut(s)	837
Aor51HI	AGCGCT	2 cut(s)	30, 701
AoxI	GGCC	5 cut(s)	133, 304, 380, 596, 795
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	2 cut(s)	854, 987
AspLEI	GCGC	2 cut(s)	31, 702
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	4 cut(s)	331, 449, 567, 733
BaeGI	GKGCMC	1 cut(s)	841
BalI	TGGCCA	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	3 cut(s)	57, 607, 991
BceAI	ACGGC	1 cut(s)	633
BciT130I	CCWGG	1 cut(s)	869
BcoDI	GTCTC	2 cut(s)	166, 938
BfaI	CTAG	3 cut(s)	18, 110, 410
BfoI	RGCGCY	2 cut(s)	32, 703
BfuAI	ACCTGC	1 cut(s)	148
BglI	GCCNNNNNGGC	2 cut(s)	141, 803
BisI	GCNGC	1 cut(s)	698
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	699
Bme1390I	CCNGG	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	994
BpiI	GAAGAC	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	314, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	869
BseDI	CCNNGG	2 cut(s)	314, 868
BseGI	GGATG	6 cut(s)	246, 595, 738, 864, 894, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	1 cut(s)	709
BseYI	CCCAGC	1 cut(s)	935
BshFI	GGCC	5 cut(s)	135, 306, 382, 598, 797
BsiHKAI	GWGCWC	1 cut(s)	841
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	166, 938
BsnI	GGCC	5 cut(s)	135, 306, 382, 598, 797
Bsp1286I	GDGCHC	2 cut(s)	575, 841
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	5 cut(s)	135, 306, 382, 598, 797
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	314, 868
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	427, 695
BstDEI	CTNAG	2 cut(s)	32, 717
BstF5I	GGATG	6 cut(s)	246, 595, 738, 864, 894, 1006
BstH2I	RGCGCY	2 cut(s)	32, 703
BstHHI	GCGC	2 cut(s)	31, 702
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	166, 938
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 141, 699, 803, 812
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	2 cut(s)	157, 207
BstSCI	CCNGG	1 cut(s)	867
BstSLI	GKGCMC	1 cut(s)	841
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	875
BsuRI	GGCC	5 cut(s)	135, 306, 382, 598, 797
BtsCI	GGATG	6 cut(s)	246, 595, 738, 864, 894, 1006
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	2 cut(s)	960, 1039
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	427, 695
CfoI	GCGC	2 cut(s)	31, 702
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	311, 1037
CspCI	CAANNNNNGTGG	2 cut(s)	506, 541
CviAII	CATG	6 cut(s)	69, 154, 204, 221, 482, 579
CviQI	GTAC	2 cut(s)	311, 1037
DdeI	CTNAG	2 cut(s)	32, 717
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	314
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	575
Eco47III	AGCGCT	2 cut(s)	30, 701
Eco57I	CTGAAG	3 cut(s)	116, 357, 936
EcoRII	CCWGG	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	6 cut(s)	72, 157, 207, 224, 485, 582
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FatI	CATG	6 cut(s)	68, 153, 203, 220, 481, 578
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	6 cut(s)	233, 602, 745, 851, 901, 1013
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	1 cut(s)	698
FspBI	CTAG	3 cut(s)	18, 110, 410
GlaI	GCGC	2 cut(s)	30, 701
GluI	GCNGC	1 cut(s)	698
GsaI	CCCAGC	1 cut(s)	939
HaeII	RGCGCY	2 cut(s)	32, 703
HaeIII	GGCC	5 cut(s)	135, 306, 382, 598, 797
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	2 cut(s)	31, 702
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	6 cut(s)	72, 157, 207, 224, 485, 582
Hin6I	GCGC	2 cut(s)	29, 700
HinP1I	GCGC	2 cut(s)	29, 700
HinfI	GANTC	3 cut(s)	243, 331, 848
HphI	GGTGA	4 cut(s)	331, 449, 567, 733
Hpy166II	GTNNAC	4 cut(s)	724, 764, 839, 1039
Hpy188I	TCNGA	1 cut(s)	888
Hpy188III	TCNNGA	5 cut(s)	257, 335, 633, 659, 769
Hpy8I	GTNNAC	4 cut(s)	724, 764, 839, 1039
HpyAV	CCTTC	7 cut(s)	146, 173, 428, 523, 659, 787, 874
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	157, 207, 425, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 141, 699, 803, 812
HpyF3I	CTNAG	2 cut(s)	32, 717
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	6 cut(s)	72, 157, 207, 224, 485, 582
HspAI	GCGC	2 cut(s)	29, 700
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	3 cut(s)	18, 110, 410
MaeIII	GTNAC	3 cut(s)	7, 412, 504
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	6 cut(s)	115, 346, 350, 674, 748, 911
MhlI	GDGCHC	2 cut(s)	575, 841
MlsI	TGGCCA	1 cut(s)	598
MluCI	AATT	6 cut(s)	145, 491, 741, 854, 906, 987
MluNI	TGGCCA	1 cut(s)	598
MlyI	GAGTC	2 cut(s)	237, 857
MmeI	TCCRAC	2 cut(s)	567, 963
MnlI	CCTC	9 cut(s)	117, 453, 562, 723, 745, 796, 826, 904, 1020
Mox20I	TGGCCA	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	598
MseI	TTAA	5 cut(s)	389, 494, 540, 686, 1048
Msp20I	TGGCCA	1 cut(s)	598
MspR9I	CCNGG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	869
MwoI	GCNNNNNNNGC	5 cut(s)	106, 141, 699, 803, 812
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	72, 157, 207, 224, 485, 582
NlaIV	GGNNCC	1 cut(s)	307
NspI	RCATGY	2 cut(s)	157, 207
PceI	AGGCCT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	699
PleI	GAGTC	2 cut(s)	237, 856
PpsI	GAGTC	2 cut(s)	237, 856
Psp6I	CCWGG	1 cut(s)	867
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	305
RsaI	GTAC	2 cut(s)	312, 1038
RsaNI	GTAC	2 cut(s)	311, 1037
SaqAI	TTAA	5 cut(s)	389, 494, 540, 686, 1048
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	237, 857
ScrFI	CCNGG	1 cut(s)	869
SduI	GDGCHC	2 cut(s)	575, 841
SfaNI	GCATC	1 cut(s)	994
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	145, 491, 741, 854, 906, 987
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	510
SspI	AATATT	2 cut(s)	325, 674
SspMI	CTAG	3 cut(s)	18, 110, 410
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	258, 634
TasI	AATT	6 cut(s)	145, 491, 741, 854, 906, 987
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	5 cut(s)	389, 494, 540, 686, 1048
Tru9I	TTAA	5 cut(s)	389, 494, 540, 686, 1048
TscAI	CASTG	2 cut(s)	960, 1046
TseI	GCWGC	1 cut(s)	697
TspDTI	ATGAA	5 cut(s)	237, 344, 359, 447, 749
TspRI	CASTG	2 cut(s)	960, 1046
VneI	GTGCAC	1 cut(s)	837
XapI	RAATTY	2 cut(s)	854, 987
XceI	RCATGY	2 cut(s)	157, 207
XspI	CTAG	3 cut(s)	18, 110, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.