Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006923

Physical Location & Seq

Genomic Coordinates Forward (+)

38364838 .. 38371451

Gene Structure 6614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATAACCAGAATTGGGCGTGTTGTTTATGGAGGCGTGCCGTTTGATGAGGTTAATGAGATGGTGCACCGAATACGGCGTGTCGTCGATGAAGCTTTTCGGTCTGGGCGGCCAAAGGAGAAGCTGGATGTAACGGTGACGGAAAAGCGCAAGACCAGTCTTCTTGGTTCGTCTTTCTTGGAGCATGTTAAGGAGATATTGGAACCTGATACTTTTATTGCTGCAGCGCCTTGGGTGTACTACCCAATAATTGAAAAGTATTCAATATATTTGACATACAAGCTTCAAGGACGCTATAAACACAGACATGCCAAAATACTGCAACCATCAAGTAAAGATGCGGCCTCAAAGCCGATATTCCAGATCGCGAAAAGTGGCGGTTTCGAAATCGAGATCCACGATCGGCCTGGTGGGATCGTCGGAGCAGTAGCAGGCGATGCTGGATTACTGGGTATTTCTACGCGTATTTTTGACGCGTATTTTTTTTACGCGTATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008104 GO:0008150 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051641 GO:0061024 GO:0070727 GO:0071840 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecY

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

9.34

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23882 FvH4_3g24160 FvH4_5g01275
rosa_roxburghii	Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500
rosa_rugosa	Rorug01G0203800 Rorug05G0204700 Rorug07G0055700
rosa_samantha	Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900
rosa_wichuraiana	Rw5G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	368, 463, 476, 491
AciI	CCGC	3 cut(s)	109, 341, 378
AclWI	GGATC	2 cut(s)	388, 422
AcoI	YGGCCR	1 cut(s)	110
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	3 cut(s)	461, 474, 489
AgsI	TTSAA	3 cut(s)	254, 264, 287
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	3 cut(s)	95, 124, 283
AluI	AGCT	3 cut(s)	95, 124, 283
Alw21I	GWGCWC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	388, 422
AoxI	GGCC	3 cut(s)	110, 342, 404
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	221, 224
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	150, 229
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	208, 236
BccI	CCATC	2 cut(s)	55, 334
BceAI	ACGGC	2 cut(s)	25, 92
BciT130I	CCWGG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	4 cut(s)	110, 222, 225, 342
BlsI	GCNGC	4 cut(s)	111, 223, 226, 343
Bme1390I	CCNGG	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	328, 427
BmuI	ACTGGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	156, 453
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	156, 453
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	208, 236
Bsh1236I	CGCG	4 cut(s)	368, 463, 476, 491
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	3 cut(s)	112, 344, 406
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	15
BsnI	GGCC	3 cut(s)	112, 344, 406
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	363, 393, 400, 414
Bsp68I	TCGCGA	1 cut(s)	368
BspACI	CCGC	3 cut(s)	109, 341, 378
BspANI	GGCC	3 cut(s)	112, 344, 406
BspFNI	CGCG	4 cut(s)	368, 463, 476, 491
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	2 cut(s)	388, 422
BspT104I	TTCGAA	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	156, 453
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	4 cut(s)	363, 393, 400, 414
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	38, 433
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	4 cut(s)	368, 463, 476, 491
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	150, 229
BstKTI	GATC	4 cut(s)	366, 396, 403, 417
BstMBI	GATC	4 cut(s)	363, 393, 400, 414
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	2 cut(s)	188, 311
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	4 cut(s)	368, 463, 476, 491
BstV1I	GCAGC	2 cut(s)	208, 236
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	112, 344, 406
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	133
BtuMI	TCGCGA	1 cut(s)	368
Cac8I	GCNNGC	2 cut(s)	38, 433
CfoI	GCGC	2 cut(s)	150, 229
CseI	GACGC	2 cut(s)	300, 482
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	185, 308
CviJI	RGCY	7 cut(s)	95, 112, 124, 283, 344, 352, 406
CviKI_1	RGCY	7 cut(s)	95, 112, 124, 283, 344, 352, 406
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	4 cut(s)	365, 395, 402, 416
DpnII	GATC	4 cut(s)	363, 393, 400, 414
EaeI	YGGCCR	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	2 cut(s)	188, 311
FaiI	YATR	6 cut(s)	30, 186, 268, 277, 297, 309
FatI	CATG	2 cut(s)	184, 307
Fnu4HI	GCNGC	4 cut(s)	110, 222, 225, 342
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	110, 222, 225, 342
GlaI	GCGC	2 cut(s)	149, 228
GluI	GCNGC	4 cut(s)	110, 222, 225, 342
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	112, 344, 406
HgaI	GACGC	2 cut(s)	300, 482
HhaI	GCGC	2 cut(s)	150, 229
Hin1II	CATG	2 cut(s)	188, 311
Hin6I	GCGC	2 cut(s)	148, 227
HinP1I	GCGC	2 cut(s)	148, 227
HindIII	AAGCTT	2 cut(s)	93, 281
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	67, 238
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	3 cut(s)	361, 367, 391
Hpy8I	GTNNAC	2 cut(s)	67, 238
Hpy99I	CGWCG	2 cut(s)	89, 422
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	67, 224, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	188, 311
HspAI	GCGC	2 cut(s)	148, 227
Kzo9I	GATC	4 cut(s)	363, 393, 400, 414
LmnI	GCTCC	2 cut(s)	181, 422
Lsp1109I	GCAGC	2 cut(s)	208, 236
LweI	GCATC	2 cut(s)	328, 427
MaeIII	GTNAC	2 cut(s)	130, 136
MalI	GATC	4 cut(s)	365, 395, 402, 416
MboI	GATC	4 cut(s)	363, 393, 400, 414
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	12, 249
MluI	ACGCGT	3 cut(s)	461, 474, 489
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	3 cut(s)	26, 43, 355
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	2 cut(s)	54, 189
MslI	CAYNNNNRTG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	4 cut(s)	368, 463, 476, 491
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	4 cut(s)	363, 393, 400, 414
NlaIII	CATG	2 cut(s)	188, 311
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	136
NruI	TCGCGA	1 cut(s)	368
NspI	RCATGY	2 cut(s)	188, 311
NspV	TTCGAA	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	111, 223, 226, 343
Ple19I	CGATCG	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	393
PvuI	CGATCG	1 cut(s)	403
RruI	TCGCGA	1 cut(s)	368
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	54, 189
SatI	GCNGC	4 cut(s)	110, 222, 225, 342
Sau3AI	GATC	4 cut(s)	363, 393, 400, 414
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	5 cut(s)	54, 97, 126, 208, 285
SfaNI	GCATC	2 cut(s)	328, 427
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	12, 249
SsiI	CCGC	3 cut(s)	109, 341, 378
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	87, 384, 390
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	12, 249
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	112, 344
Tru1I	TTAA	2 cut(s)	54, 189
Tru9I	TTAA	2 cut(s)	54, 189
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	221, 224
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	65
XceI	RCATGY	2 cut(s)	188, 311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.