FvH4_3g24160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006923
Physical Location & Seq
Forward (+)
17166263 .. 17166896
634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24160.t1

Sequence Viewer

Length: 321 bp
ATGAGCGTCGCGGTTACCTGGGACGTGACGCGAACCTGCTACTGCTCCGACGATCGCACACTGCCGATCGTGGATCTGGATTCCCGAACGGCGACGTTCGACGATCTGGAATATCGGGTGTTCATGATGATCGACGACGACGATATTGGCGTGGTAAATAAGATGATAACCTGCATTGGGCGCCTTATTAAATTTTACGACGGCGTGTCGTTTGATGAGATTAACGAGATGGTGCACCGAATCCGACGCGTCGTTGATGAGGCTTATCGGTCTGGGAGCACGAATGGAGAAATTGAATGTGATGGTGACGCTGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.15

Weight (kDa)

4.3

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 44, 179
AccB1I GGYRCC 1 cut(s) 180
AccII CGCG 3 cut(s) 11, 31, 249
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 296
AhdI GACNNNNNGTC 1 cut(s) 205
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 17
Alw21I GWGCWC 2 cut(s) 237, 281
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 1 cut(s) 81
ApaLI GTGCAC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 237, 281
BccI CCATC 2 cut(s) 223, 296
BceAI ACGGC 2 cut(s) 105, 217
BciT130I CCWGG 1 cut(s) 19
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 2 cut(s) 44, 179
Bme1390I CCNGG 1 cut(s) 19
BmeRI GACNNNNNGTC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 237
Bsh1236I CGCG 3 cut(s) 11, 31, 249
Bsh1285I CGRYCG 2 cut(s) 55, 69
BshNI GGYRCC 1 cut(s) 180
BsiEI CGRYCG 2 cut(s) 55, 69
BsiHKAI GWGCWC 2 cut(s) 237, 281
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 237, 281
Bsp143I GATC 5 cut(s) 52, 66, 73, 103, 129
BspACI CCGC 1 cut(s) 11
BspFNI CGCG 3 cut(s) 11, 31, 249
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 2 cut(s) 44, 179
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 5 cut(s) 52, 66, 73, 103, 129
BssNI GRCGYC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 13
BstFNI CGCG 3 cut(s) 11, 31, 249
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 5 cut(s) 55, 69, 76, 106, 132
BstMBI GATC 5 cut(s) 52, 66, 73, 103, 129
BstMCI CGRYCG 2 cut(s) 55, 69
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 3 cut(s) 11, 31, 249
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtrI CACGTC 1 cut(s) 25
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 2 cut(s) 44, 179
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 183
CseI GACGC 3 cut(s) 37, 238, 255
CviAII CATG 1 cut(s) 124
CviJI RGCY 1 cut(s) 263
CviKI_1 RGCY 1 cut(s) 263
DinI GGCGCC 1 cut(s) 182
DpnI GATC 5 cut(s) 54, 68, 75, 105, 131
DpnII GATC 5 cut(s) 52, 66, 73, 103, 129
DriI GACNNNNNGTC 1 cut(s) 205
Eam1105I GACNNNNNGTC 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 182
EheI GGCGCC 1 cut(s) 182
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 123
GlaI GCGC 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 184
HgaI GACGC 3 cut(s) 37, 238, 255
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 2 cut(s) 80, 240
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 49, 245
Hpy188III TCNNGA 4 cut(s) 77, 84, 107, 124
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 24, 95
HpyCH4V TGCA 2 cut(s) 174, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpySE526I ACGT 2 cut(s) 24, 95
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 181
KasI GGCGCC 1 cut(s) 180
Kzo9I GATC 5 cut(s) 52, 66, 73, 103, 129
LmnI GCTCC 2 cut(s) 50, 276
LpnPI CCDG 7 cut(s) 4, 31, 49, 62, 92, 184, 258
MaeII ACGT 2 cut(s) 24, 95
MaeIII GTNAC 3 cut(s) 13, 25, 305
MalI GATC 5 cut(s) 54, 68, 75, 105, 131
MboI GATC 5 cut(s) 52, 66, 73, 103, 129
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 237, 281
MluCI AATT 2 cut(s) 191, 291
MluI ACGCGT 1 cut(s) 247
Mly113I GGCGCC 1 cut(s) 181
MmeI TCCRAC 2 cut(s) 72, 268
MnlI CCTC 1 cut(s) 253
MseI TTAA 2 cut(s) 189, 222
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 3 cut(s) 11, 31, 249
MwoI GCNNNNNNNGC 1 cut(s) 180
NarI GGCGCC 1 cut(s) 181
NdeII GATC 5 cut(s) 52, 66, 73, 103, 129
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 25, 305
PagI TCATGA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 147
PfeI GAWTC 2 cut(s) 80, 240
Ple19I CGATCG 2 cut(s) 55, 69
PluTI GGCGCC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 17
PspEI GGTNACC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 2 cut(s) 55, 69
SaqAI TTAA 2 cut(s) 189, 222
Sau3AI GATC 5 cut(s) 52, 66, 73, 103, 129
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 2 cut(s) 237, 281
SetI ASST 5 cut(s) 20, 27, 38, 98, 173
SfoI GGCGCC 1 cut(s) 182
Sse9I AATT 2 cut(s) 191, 291
SsiI CCGC 1 cut(s) 11
SspDI GGCGCC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 17
TaiI ACGT 2 cut(s) 27, 98
TaqI TCGA 2 cut(s) 99, 132
TaqII GACCGA 1 cut(s) 258
TasI AATT 2 cut(s) 191, 291
TfiI GAWTC 2 cut(s) 80, 240
Tru1I TTAA 2 cut(s) 189, 222
Tru9I TTAA 2 cut(s) 189, 222
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 2 cut(s) 25, 305
Tsp45I GTSAC 2 cut(s) 25, 305
TspDTI ATGAA 1 cut(s) 112
TspRI CASTG 1 cut(s) 66
VneI GTGCAC 1 cut(s) 233
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.