Rroxscaffold_1G00038380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006923
Physical Location & Seq
Forward (+)
55779953 .. 55780354
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038380.1

Sequence Viewer

Length: 402 bp
ATGCAAGCTTCGCGACCCTTGAGCAATTTTCACTACCGCATTTCCGTCTCCGACAAAGATCCGGCCGAGCCCAGCCGGAAAAGAAAGCTCCGGGAGGATTATCACATGAGGGTCACGGTGGTCTGGGACGTGATGCGAACCTGCTACTGCTCCGACGATCCCACCAGGCCGATCGTGGATCTCGATTTCGAGACCGCCACTTTTCGCGATCTGGAATATCGGCTCTTCACCGTCATCGACGACGACGACGTCGGCATCGTAGACAACATGATAACCCGAATTGGGCGTGTTGTTTATGGAGGCGTGCCGTTTGATGAGGTTAATGAGATGGTGCACCGAATACGACGTGTCGTCGATGAAGCTTTTCGGTCTGGGCGACCAAAAAGGAGAAGCTGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.76

Weight (kDa)

6.83

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 261
AccII CGCG 2 cut(s) 13, 207
AciI CCGC 2 cut(s) 37, 195
AclWI GGATC 3 cut(s) 53, 152, 186
AcoI YGGCCR 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 346
AhdI GACNNNNNGTC 1 cut(s) 350
AjiI CACGTC 2 cut(s) 130, 347
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 4 cut(s) 8, 88, 362, 393
AluI AGCT 4 cut(s) 8, 88, 362, 393
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 52, 185
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 3 cut(s) 53, 152, 186
AoxI GGCC 2 cut(s) 63, 167
ApaLI GTGCAC 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 52, 185
BfuAI ACCTGC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 92, 166
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgBI CACGTC 2 cut(s) 130, 347
BmrFI CCNGG 2 cut(s) 92, 166
BmsI GCATC 2 cut(s) 123, 264
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 336
BseX3I CGGCCG 1 cut(s) 63
BseYI CCCAGC 2 cut(s) 71, 393
Bsh1236I CGCG 2 cut(s) 13, 207
Bsh1285I CGRYCG 2 cut(s) 66, 174
BshFI GGCC 2 cut(s) 65, 169
BsiEI CGRYCG 2 cut(s) 66, 174
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 3 cut(s) 62, 76, 91
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 52, 185
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 65, 169
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 72, 336
Bsp143I GATC 5 cut(s) 58, 157, 171, 178, 208
Bsp68I TCGCGA 2 cut(s) 13, 207
BspACI CCGC 2 cut(s) 37, 195
BspANI GGCC 2 cut(s) 65, 169
BspFNI CGCG 2 cut(s) 13, 207
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 3 cut(s) 53, 152, 186
BspQI GCTCTTC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 185
BssMI GATC 5 cut(s) 58, 157, 171, 178, 208
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 118, 232
Bst6I CTCTTC 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 6, 305
BstFNI CGCG 2 cut(s) 13, 207
BstKTI GATC 5 cut(s) 61, 160, 174, 181, 211
BstMAI GTCTC 2 cut(s) 52, 185
BstMBI GATC 5 cut(s) 58, 157, 171, 178, 208
BstMCI CGRYCG 2 cut(s) 66, 174
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 90, 164
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 2 cut(s) 13, 207
BstX2I RGATCY 2 cut(s) 58, 178
BstYI RGATCY 2 cut(s) 58, 178
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 65, 169
BtrI CACGTC 2 cut(s) 130, 347
BtuMI TCGCGA 2 cut(s) 13, 207
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 6, 305
CviAII CATG 2 cut(s) 106, 268
CviJI RGCY 9 cut(s) 8, 65, 70, 75, 88, 169, 223, 362, 393
CviKI_1 RGCY 9 cut(s) 8, 65, 70, 75, 88, 169, 223, 362, 393
DpnI GATC 5 cut(s) 60, 159, 173, 180, 210
DpnII GATC 5 cut(s) 58, 157, 171, 178, 208
DrdI GACNNNNNNGTC 1 cut(s) 248
DriI GACNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 230
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 109, 271
FaiI YATR 3 cut(s) 107, 269, 297
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 105, 267
FblI GTMKAC 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 72
GsaI CCCAGC 2 cut(s) 75, 397
HaeIII GGCC 2 cut(s) 65, 169
HapII CCGG 3 cut(s) 62, 76, 91
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 109, 271
HindIII AAGCTT 2 cut(s) 6, 360
HpaII CCGG 3 cut(s) 62, 76, 91
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 262, 334
Hpy188I TCNGA 2 cut(s) 52, 154
Hpy188III TCNNGA 5 cut(s) 12, 182, 190, 206, 212
Hpy8I GTNNAC 2 cut(s) 262, 334
Hpy99I CGWCG 8 cut(s) 158, 242, 245, 248, 251, 254, 348, 356
HpyCH4III ACNGT 2 cut(s) 118, 232
HpyCH4IV ACGT 3 cut(s) 129, 249, 346
HpyCH4V TGCA 2 cut(s) 4, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 3 cut(s) 129, 249, 346
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 109, 271
Kzo9I GATC 5 cut(s) 58, 157, 171, 178, 208
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 93, 155
LweI GCATC 2 cut(s) 123, 264
MaeII ACGT 3 cut(s) 129, 249, 346
MaeIII GTNAC 1 cut(s) 112
MalI GATC 5 cut(s) 60, 159, 173, 180, 210
MboI GATC 5 cut(s) 58, 157, 171, 178, 208
MboII GAAGA 1 cut(s) 217
MflI RGATCY 2 cut(s) 58, 178
MhlI GDGCHC 2 cut(s) 72, 336
MluCI AATT 2 cut(s) 25, 279
MmeI TCCRAC 2 cut(s) 75, 177
MnlI CCTC 4 cut(s) 88, 102, 293, 310
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 321
MspI CCGG 3 cut(s) 62, 76, 91
MspR9I CCNGG 2 cut(s) 92, 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 13, 207
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 92
NdeII GATC 5 cut(s) 58, 157, 171, 178, 208
NlaIII CATG 2 cut(s) 109, 271
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 112
NruI TCGCGA 2 cut(s) 13, 207
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 5 cut(s) 180, 243, 246, 255, 373
PdmI GAANNNNTTC 1 cut(s) 363
PflFI GACNNNGTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 90
Ple19I CGATCG 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 2 cut(s) 71, 393
PspGI CCWGG 1 cut(s) 164
PsuI RGATCY 2 cut(s) 58, 178
PsyI GACNNNGTC 1 cut(s) 248
PvuI CGATCG 1 cut(s) 174
RruI TCGCGA 2 cut(s) 13, 207
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 5 cut(s) 58, 157, 171, 178, 208
ScrFI CCNGG 2 cut(s) 92, 166
SduI GDGCHC 2 cut(s) 72, 336
SetI ASST 9 cut(s) 10, 90, 132, 143, 252, 321, 349, 364, 395
SfaNI GCATC 2 cut(s) 123, 264
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 2 cut(s) 25, 279
SsiI CCGC 2 cut(s) 37, 195
StyD4I CCNGG 2 cut(s) 90, 164
TaaI ACNGT 2 cut(s) 118, 232
TaiI ACGT 3 cut(s) 132, 252, 349
TaqI TCGA 4 cut(s) 183, 189, 237, 354
TaqII GACCGA 1 cut(s) 357
TasI AATT 2 cut(s) 25, 279
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 248
VneI GTGCAC 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 363
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.