Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006923

Physical Location & Seq

Genomic Coordinates Forward (+)

17083290 .. 17083781

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG183900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAGTCTTCGAGTCTCGATTTCGTTTACCACATCTTCGTCTCCGAAGTCGCCAGCGATAAAGACTCCGCTGGAGCAGAATCCAGCCGGAAAAGGAAACTCCGAGACGATCGTCAGATGAGCGTCTCGTTTATCTGGAACGTCTTCAAAAAGTGCTACTGCTCTGACGACCGGTCAAGACCGGTAGTCGACCTCGATTTCCGAACGGAAAGATTCAAAGATCTCGAGTACCGGCTGTTCACCGTCGTGGACGAGGACGACATCGGCATCGTTGATGAGATGGTTACCAAAGTTGGCCGTGTCCTTTACGGCGGGGCGAAGTTTGAGGAGGTTGACGAGATGGTGCACCAAATACGACGCGTCGTTGATGGAGCTTTCCGAACAGGATTGCGGCGGGAGAAGCTTGACGTCATGGTCACCGTCAAGAACCAAGTTGGACTGCCGGTTGATGAATATGAAGCAGTGCTTCGGGAGATCCAAGACCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

163

Amino Acids

18.93

Weight (kDa)

5.07

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23882 FvH4_3g24160 FvH4_5g01275
rosa_roxburghii	Rroxscaffold_1G00037570 Rroxscaffold_1G00038380 Rroxscaffold_1G00038470 Rroxscaffold_3G00256500
rosa_rugosa	Rorug01G0203800 Rorug05G0204700 Rorug07G0055700
rosa_samantha	Rh5AG285600 Rh5AG290400 Rh5BG290300 Rh5BG296600 Rh5CG322200 Rh5CG326600 Rh5CG330900 Rh5DG299500 Rh5DG299600 Rh5DG306400 Rh6BG494400 Rh7AG180900 Rh7BG183800 Rh7CG190500 Rh7DG183900
rosa_wichuraiana	Rw5G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AatII	GACGTC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	69, 312, 391, 394
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	2 cut(s)	171, 181
AgsI	TTSAA	2 cut(s)	148, 217
AhdI	GACNNNNNGTC	2 cut(s)	172, 185
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	374, 403
AluI	AGCT	2 cut(s)	374, 403
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	4 cut(s)	20, 46, 99, 130
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	344
AsiGI	ACCGGT	2 cut(s)	171, 181
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	232, 409
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	3 cut(s)	274, 334, 362
BceAI	ACGGC	2 cut(s)	282, 325
BcoDI	GTCTC	4 cut(s)	20, 46, 99, 130
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmeRI	GACNNNNNGTC	2 cut(s)	172, 185
BmeT110I	CYCGRG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	276
BoxI	GACNNNNGTC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	408
BsaWI	WCCGGW	2 cut(s)	171, 181
Bse118I	RCCGGY	4 cut(s)	171, 181, 231, 442
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	2 cut(s)	112, 172
BshFI	GGCC	1 cut(s)	297
BshTI	ACCGGT	2 cut(s)	171, 181
BsiEI	CGRYCG	2 cut(s)	112, 172
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	5 cut(s)	88, 172, 182, 232, 443
BsmAI	GTCTC	4 cut(s)	20, 46, 99, 130
BsmBI	CGTCTC	3 cut(s)	46, 99, 130
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	109, 220, 474
BspACI	CCGC	4 cut(s)	69, 312, 391, 394
BspANI	GGCC	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	469
BsrFI	RCCGGY	4 cut(s)	171, 181, 231, 442
BssAI	RCCGGY	4 cut(s)	171, 181, 231, 442
BssMI	GATC	3 cut(s)	109, 220, 474
BssNI	GRCGYC	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	244, 421
BstACI	GRCGYC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	55
BstEII	GGTNACC	2 cut(s)	283, 415
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	112, 223, 477
BstMAI	GTCTC	4 cut(s)	20, 46, 99, 130
BstMBI	GATC	3 cut(s)	109, 220, 474
BstMCI	CGRYCG	2 cut(s)	112, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	111
BstPI	GGTNACC	2 cut(s)	283, 415
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	220, 474
BstYI	RGATCY	2 cut(s)	220, 474
BsuRI	GGCC	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	55
Cfr10I	RCCGGY	4 cut(s)	171, 181, 231, 442
CseI	GACGC	3 cut(s)	112, 349, 366
Csp6I	GTAC	1 cut(s)	229
CspAI	ACCGGT	2 cut(s)	171, 181
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	5 cut(s)	87, 235, 297, 374, 403
CviKI_1	RGCY	5 cut(s)	87, 235, 297, 374, 403
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	3 cut(s)	111, 222, 476
DpnII	GATC	3 cut(s)	109, 220, 474
DrdI	GACNNNNNNGTC	1 cut(s)	413
DriI	GACNNNNNGTC	2 cut(s)	172, 185
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	295
Eam1105I	GACNNNNNGTC	2 cut(s)	172, 185
Eco88I	CYCGRG	1 cut(s)	224
Eco91I	GGTNACC	2 cut(s)	283, 415
EcoO65I	GGTNACC	2 cut(s)	283, 415
Esp3I	CGTCTC	3 cut(s)	46, 99, 130
FaeI	CATG	1 cut(s)	415
FaiI	YATR	2 cut(s)	413, 456
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	1 cut(s)	411
FauI	CCCGC	2 cut(s)	305, 387
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	5 cut(s)	88, 172, 182, 232, 443
HgaI	GACGC	3 cut(s)	112, 349, 366
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	415
HincII	GTYRAC	2 cut(s)	190, 334
HindII	GTYRAC	2 cut(s)	190, 334
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	4 cut(s)	13, 65, 80, 213
HpaII	CCGG	5 cut(s)	88, 172, 182, 232, 443
HphI	GGTGA	2 cut(s)	232, 409
Hpy166II	GTNNAC	6 cut(s)	28, 190, 240, 250, 334, 346
Hpy188I	TCNGA	6 cut(s)	46, 104, 117, 166, 203, 380
Hpy188III	TCNNGA	6 cut(s)	17, 136, 177, 224, 424, 470
Hpy8I	GTNNAC	6 cut(s)	28, 190, 240, 250, 334, 346
Hpy99I	CGWCG	3 cut(s)	248, 360, 365
HpyCH4III	ACNGT	2 cut(s)	244, 421
HpyCH4IV	ACGT	2 cut(s)	141, 408
HpyCH4V	TGCA	2 cut(s)	4, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpySE526I	ACGT	2 cut(s)	141, 408
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	109, 220, 474
LmnI	GCTCC	2 cut(s)	74, 371
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	2 cut(s)	141, 408
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	3 cut(s)	111, 222, 476
MboI	GATC	3 cut(s)	109, 220, 474
MboII	GAAGA	2 cut(s)	28, 136
MflI	RGATCY	2 cut(s)	220, 474
MhlI	GDGCHC	1 cut(s)	348
MluI	ACGCGT	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	22, 59
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	203, 247, 319, 322
MroXI	GAANNNNTTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	5 cut(s)	88, 172, 182, 232, 443
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	3 cut(s)	109, 220, 474
NlaIII	CATG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	80, 213
PinAI	ACCGGT	2 cut(s)	171, 181
PkrI	GCNGC	1 cut(s)	393
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	2 cut(s)	21, 59
PpsI	GAGTC	2 cut(s)	21, 59
PshAI	GACNNNNGTC	1 cut(s)	111
PspEI	GGTNACC	2 cut(s)	283, 415
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PsuI	RGATCY	2 cut(s)	220, 474
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	109, 220, 474
SchI	GAGTC	2 cut(s)	22, 59
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	6 cut(s)	144, 195, 333, 376, 405, 411
SfaNI	GCATC	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	4 cut(s)	69, 312, 391, 394
TaaI	ACNGT	2 cut(s)	244, 421
TaiI	ACGT	2 cut(s)	144, 411
TaqI	TCGA	5 cut(s)	11, 18, 189, 195, 225
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	80, 213
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	465, 471
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	468
VneI	GTGCAC	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.