Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

17867131 .. 17869652

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24760.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCCCATCTCAGCAGAACATTCACAAGTATATCCAGTCAAGAACCCAAGAACCCATCTTCCAAATTCCTCAAGCCCATCAAAGAGACTCCCCACCATGACAGGGATGATTTCAAACACAGCTGTGGTGGTGATGGGTTTCTTGGGAATGCTTTACATGGCAACTCAGCTTCCACCACCACAGACATCTGCTCTGCCTGACGATCCTTCTCCAACCTCACCAAGAATCAGGCTTGCTGATGGGAGGCATCTGGCTTACAGAGAAAGTGGGGTTCCCAAGAGCAGATCAAAGTTCAAGATCATCATAGTTCATGGCTTTGGAAGCTCTAAAGAAATGAGTTTCCATGCACCCCAAGAAATGATAGATGAGTTGGGGATATATTTTCTGCTATATGACCGGGCTGGTTATGGAGATAGTGATCCAAATCCAAAGCGGTCAGTGAAGAGTGAAGCCCTTGACATCGAAGAACTAGCCGATCAGTTACAGCTTGGATCAAAATTTTATGTGATTGGAGTATCAATGGGATCATACTCTACCTGGAGTTGCATCAAATACATCCCACATAGGTTAGCTGGTGTGGCTTTTGTAGTCCCAGTTGTGAACTATAGGTGGCCTTCATTTCCAGACAATCTGATAAAGGATGATTACAGAAGAAAACTAGTCCAATCAGCACTCTGGTTTGCAGAATATGCCCCTGGGCTGTTGCGATGGTGGGTGACTCAGAAATGGCTCCCTTCAACTTCTGTCATGGAAAGAAACCCGGTATTCTTCAACACCAGAGACATTGATGCCCTCAAAACAGCCCCAGGCTTCCCAATGCTCACTAAGGATAAATTACGGCAAAGAGGGGTTTTTGATACTCTGCATAATGACTTTAAAGCAGCTTTCAGCCATTGGGATTTTGATCCGATGGATCTGAGTAATCCATTCCCGCAAAATCAGAGCGCCGTCCACATATGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCAACTGCAAAGATACATTTCGTCAAAACTACCCTGGATTCAGTATCATGAAGTTCCTGATGGTGGGCATTTGATCATCCATTATGCTGGTTTATGTGAAGTCATTCTCAGGACACTTCTGCTTGGTGAAGAATCACTTCACTACAAACCTATTACAGCCAAAACTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

388

Amino Acids

43.96

Weight (kDa)

8.8

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	9 - 237	2.5e-10	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	10 - 237	3.3e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	433, 932
AclWI	GGATC	6 cut(s)	197, 413, 499, 532, 899, 921
AcsI	RAATTY	2 cut(s)	64, 497
AfiI	CCNNNNNNNGG	2 cut(s)	102, 1052
AgsI	TTSAA	5 cut(s)	114, 295, 738, 772, 992
AhlI	ACTAGT	1 cut(s)	658
AjnI	CCWGG	4 cut(s)	536, 694, 805, 1022
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
AluBI	AGCT	6 cut(s)	122, 169, 324, 487, 572, 884
AluI	AGCT	6 cut(s)	122, 169, 324, 487, 572, 884
Alw26I	GTCTC	2 cut(s)	79, 774
AlwI	GGATC	6 cut(s)	197, 413, 499, 532, 899, 921
AoxI	GGCC	1 cut(s)	611
ApeKI	GCWGC	1 cut(s)	881
ApoI	RAATTY	2 cut(s)	64, 497
Asp700I	GAANNNNTTC	2 cut(s)	1092, 1125
AspLEI	GCGC	1 cut(s)	947
AsuC2I	CCSGG	2 cut(s)	398, 761
AsuHPI	GGTGA	4 cut(s)	142, 210, 727, 1127
BbvI	GCAGC	1 cut(s)	893
BccI	CCATC	8 cut(s)	14, 63, 85, 127, 233, 702, 904, 1043
BceAI	ACGGC	2 cut(s)	854, 932
BciT130I	CCWGG	4 cut(s)	538, 696, 807, 1024
BclI	TGATCA	1 cut(s)	1062
BcnI	CCSGG	2 cut(s)	398, 761
BcoDI	GTCTC	2 cut(s)	79, 774
BcuI	ACTAGT	1 cut(s)	658
BfaI	CTAG	2 cut(s)	470, 659
BfmI	CTRYAG	1 cut(s)	604
BfoI	RGCGCY	1 cut(s)	948
BisI	GCNGC	1 cut(s)	882
BlsI	GCNGC	1 cut(s)	883
Bme1390I	CCNGG	6 cut(s)	398, 538, 696, 761, 807, 1024
BmiI	GGNNCC	2 cut(s)	273, 731
BmrFI	CCNGG	6 cut(s)	398, 538, 696, 761, 807, 1024
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	256, 555, 778
BmuI	ACTGGG	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	398, 761
BsaBI	GATNNNNATC	3 cut(s)	417, 423, 903
BsaJI	CCNNGG	4 cut(s)	694, 695, 805, 1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 1052
Bse1I	ACTGG	2 cut(s)	35, 593
Bse8I	GATNNNNATC	3 cut(s)	417, 423, 903
BseBI	CCWGG	4 cut(s)	538, 696, 807, 1024
BseDI	CCNNGG	4 cut(s)	694, 695, 805, 1022
BseGI	GGATG	4 cut(s)	111, 555, 646, 1065
BseJI	GATNNNNATC	3 cut(s)	417, 423, 903
BseLI	CCNNNNNNNGG	2 cut(s)	102, 1052
BseMII	CTCAG	5 cut(s)	24, 179, 734, 908, 1111
BseNI	ACTGG	2 cut(s)	35, 593
BseXI	GCAGC	1 cut(s)	893
BshFI	GGCC	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	397, 761
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	102, 1052
BsmAI	GTCTC	2 cut(s)	79, 774
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	613
BspACI	CCGC	2 cut(s)	433, 932
BspANI	GGCC	1 cut(s)	613
BspCNI	CTCAG	5 cut(s)	23, 178, 733, 909, 1110
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	2 cut(s)	273, 731
BspPI	GGATC	6 cut(s)	197, 413, 499, 532, 899, 921
BsrI	ACTGG	2 cut(s)	35, 593
BssECI	CCNNGG	4 cut(s)	694, 695, 805, 1022
Bst2UI	CCWGG	4 cut(s)	538, 696, 807, 1024
Bst4CI	ACNGT	1 cut(s)	1156
Bst6I	CTCTTC	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	6 cut(s)	10, 165, 720, 825, 917, 1097
BstF5I	GGATG	4 cut(s)	111, 555, 646, 1065
BstH2I	RGCGCY	1 cut(s)	948
BstHHI	GCGC	1 cut(s)	947
BstMAI	GTCTC	2 cut(s)	79, 774
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 578, 689
BstNI	CCWGG	4 cut(s)	538, 696, 807, 1024
BstSCI	CCNGG	6 cut(s)	396, 536, 694, 759, 805, 1022
BstSFI	CTRYAG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	893
BstX2I	RGATCY	1 cut(s)	913
BstXI	CCANNNNNNTGG	1 cut(s)	1076
BstYI	RGATCY	1 cut(s)	913
BsuRI	GGCC	1 cut(s)	613
BtgZI	GCGATG	1 cut(s)	721
BtsCI	GGATG	4 cut(s)	111, 555, 646, 1065
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	1036
CfoI	GCGC	1 cut(s)	947
CviAII	CATG	6 cut(s)	97, 157, 311, 344, 748, 1037
DdeI	CTNAG	6 cut(s)	10, 165, 720, 825, 917, 1097
DraI	TTTAAA	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EcoRII	CCWGG	4 cut(s)	536, 694, 805, 1022
FaeI	CATG	6 cut(s)	100, 160, 314, 347, 751, 1040
FalI	AAGNNNNNCTT	2 cut(s)	1110, 1142
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	6 cut(s)	96, 156, 310, 343, 747, 1036
FauI	CCCGC	1 cut(s)	939
FauNDI	CATATG	1 cut(s)	956
FbaI	TGATCA	1 cut(s)	1062
Fnu4HI	GCNGC	1 cut(s)	882
FokI	GGATG	4 cut(s)	118, 542, 653, 1052
Fsp4HI	GCNGC	1 cut(s)	882
FspBI	CTAG	2 cut(s)	470, 659
GlaI	GCGC	1 cut(s)	946
GluI	GCNGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	559
HaeII	RGCGCY	1 cut(s)	948
HaeIII	GGCC	1 cut(s)	613
HapII	CCGG	2 cut(s)	397, 761
HhaI	GCGC	1 cut(s)	947
Hin1II	CATG	6 cut(s)	100, 160, 314, 347, 751, 1040
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HinfI	GANTC	5 cut(s)	87, 225, 718, 1027, 1121
HpaII	CCGG	2 cut(s)	397, 761
HphI	GGTGA	4 cut(s)	142, 210, 727, 1127
Hpy166II	GTNNAC	2 cut(s)	601, 952
Hpy188I	TCNGA	5 cut(s)	633, 723, 909, 918, 942
Hpy188III	TCNNGA	6 cut(s)	40, 295, 623, 1037, 1046, 1099
Hpy8I	GTNNAC	2 cut(s)	601, 952
HpyAV	CCTTC	3 cut(s)	216, 624, 744
HpyCH4III	ACNGT	1 cut(s)	1156
HpyCH4V	TGCA	5 cut(s)	347, 546, 683, 865, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 578, 689
HpyF3I	CTNAG	6 cut(s)	10, 165, 720, 825, 917, 1097
Hsp92II	CATG	6 cut(s)	100, 160, 314, 347, 751, 1040
HspAI	GCGC	1 cut(s)	945
Ksp22I	TGATCA	1 cut(s)	1062
LmnI	GCTCC	1 cut(s)	735
Lsp1109I	GCAGC	1 cut(s)	893
LweI	GCATC	3 cut(s)	256, 555, 778
MaeI	CTAG	2 cut(s)	470, 659
MaeIII	GTNAC	2 cut(s)	480, 715
MboII	GAAGA	7 cut(s)	50, 454, 476, 663, 760, 983, 1130
MflI	RGATCY	1 cut(s)	913
MluCI	AATT	3 cut(s)	64, 497, 833
MlyI	GAGTC	2 cut(s)	81, 712
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	79, 226, 237, 803, 839
MroXI	GAANNNNTTC	2 cut(s)	1092, 1125
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	397, 761
MspR9I	CCNGG	6 cut(s)	398, 538, 696, 761, 807, 1024
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	4 cut(s)	538, 696, 807, 1024
MwoI	GCNNNNNNNGC	3 cut(s)	321, 578, 689
NciI	CCSGG	2 cut(s)	398, 761
NdeI	CATATG	1 cut(s)	956
NlaIII	CATG	6 cut(s)	100, 160, 314, 347, 751, 1040
NlaIV	GGNNCC	2 cut(s)	273, 731
NmuCI	GTSAC	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	1036
PasI	CCCWGGG	1 cut(s)	695
PctI	GAATGC	1 cut(s)	153
PdmI	GAANNNNTTC	2 cut(s)	1092, 1125
PfeI	GAWTC	3 cut(s)	225, 1027, 1121
PkrI	GCNGC	1 cut(s)	883
PleI	GAGTC	2 cut(s)	81, 712
PpsI	GAGTC	2 cut(s)	81, 712
Psp6I	CCWGG	4 cut(s)	536, 694, 805, 1022
PspGI	CCWGG	4 cut(s)	536, 694, 805, 1022
PspN4I	GGNNCC	2 cut(s)	273, 731
PsuI	RGATCY	1 cut(s)	913
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	1 cut(s)	882
SchI	GAGTC	2 cut(s)	81, 712
ScrFI	CCNGG	6 cut(s)	398, 538, 696, 761, 807, 1024
SfaNI	GCATC	3 cut(s)	256, 555, 778
SfcI	CTRYAG	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SpeI	ACTAGT	1 cut(s)	658
Sse9I	AATT	3 cut(s)	64, 497, 833
SsiI	CCGC	2 cut(s)	433, 932
SspMI	CTAG	2 cut(s)	470, 659
StyD4I	CCNGG	6 cut(s)	396, 536, 694, 759, 805, 1022
TaaI	ACNGT	1 cut(s)	1156
TaqI	TCGA	1 cut(s)	462
TasI	AATT	3 cut(s)	64, 497, 833
TfiI	GAWTC	3 cut(s)	225, 1027, 1121
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	1 cut(s)	881
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	4 cut(s)	299, 606, 984, 1053
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	2 cut(s)	64, 497
XmnI	GAANNNNTTC	2 cut(s)	1092, 1125
XspI	CTAG	2 cut(s)	470, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.