Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

13056158 .. 13058156

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTGTGGTCGCCGGAGTTGGAGCGGTTTTCGTCAGTCGTGACAACGGAGTACCGTGGGAGAGGATACAGATTCCCCTATCCGCGGAACATTCAAAAGTATATCCAGGTATAATAAAAACCCACCAATCTCTTCACCTTTTGAAATCCCAGAAACCCAACAGGGAAATCATGCCAGGAAAGAATTCAAAAACAAGTGCTGTGGCTGAAGAAGCAGAAGAAGTTGCTGGAGCTTCACCAAGAATCAAGCTTGCAGATGGAAGGCATCTGGCCTACAGAGAAAGTGGGGTCCCCAAGAACAAGGCAAACTACAAGATCATCATGGTTCATGGCTTTGGAAGCTCCAAGGAAATGAGTTTCCTGGCTCCCCAAGAATTAATTGATGAGTTGGGGATATATTTCCTGCTCTACGACCGGGCAGGTTATGGAGAAAGTGATCCAAATCCAAAGCGTTCGGTCAAGAGTGAAGCCCTTGACATCGAACAACTAGCCGATCAGTTAGAGCTAGGCTCCAAGTTTTATGTCATTGGAGTCTCAATGGGATCATATTCCACCTGGAGTTGCATCAAACATATACCACAGAGGCTCGCAGGTGTGGCCTTAGTAGTTCCAGTTGTCAATTACCAATGGCCTTCTCTTCCCAAGAAACTGATAAAGGATGATTATCGGAGAAAACTCATCCATTGGGGCCTCTTGTTTGCAGAATTTGCCCCGGGACTACTGCGGTGGTGGGTAACTCAGAAATGGCTCCCCTCAACGTCTGTCATGGAAAGAAACCCGGTATTCTTCAACAGCAAAGACATGGATGTCCTCAAAATAATACCAGGCTTCCCAATGCTGACTCAGGAGAATCTACGGCAACGAGTGGTTTTCAATACTCTGCATCGTGACTTCAAATTGGCATTCACTCCTTGGGATTTCGATCCAATGGATCTCAGTAACCCATTCCCACAAAACCAGCGGTCTGTTCACATTTGGCAAGGTTACGAAGATAAGGTTGTGCCGGTTCAACTTCAGAGATTCATTTCAAGTAAGCTGCCGTGGATTCAGTATCACGAAGTTCCCGATGGCGGACATTTGATTGTGCATTATGCCGGTTTAAGTGAGGCGATTCTGAGGGCGCTTTTGCTCGGAGAAGAACATCCCCGTTACAAACCTAGTATACCCAAACTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

394

Amino Acids

44.63

Weight (kDa)

9.18

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	581
AasI	GACNNNNNNGTC	1 cut(s)	806
Acc36I	ACCTGC	2 cut(s)	410, 581
AccBSI	CCGCTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	1162
AccII	CGCG	1 cut(s)	86
AciI	CCGC	6 cut(s)	26, 84, 86, 724, 961, 1071
AclWI	GGATC	4 cut(s)	431, 550, 917, 939
AcsI	RAATTY	2 cut(s)	184, 704
AcuI	CTGAAG	2 cut(s)	228, 998
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	85, 1070
AgsI	TTSAA	8 cut(s)	96, 145, 189, 790, 874, 895, 1010, 1029
AjnI	CCWGG	5 cut(s)	106, 175, 360, 554, 823
AluBI	AGCT	5 cut(s)	233, 250, 342, 505, 1036
AluI	AGCT	5 cut(s)	233, 250, 342, 505, 1036
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	4 cut(s)	431, 550, 917, 939
Ama87I	CYCGRG	1 cut(s)	712
AoxI	GGCC	4 cut(s)	270, 597, 629, 688
ApeKI	GCWGC	1 cut(s)	1036
ApoI	RAATTY	2 cut(s)	184, 704
AseI	ATTAAT	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	1123
AspS9I	GGNCC	2 cut(s)	289, 688
AsuC2I	CCSGG	4 cut(s)	416, 713, 714, 779
AsuHPI	GGTGA	2 cut(s)	128, 228
AvaI	CYCGRG	1 cut(s)	712
AvaII	GGWCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	1023
BccI	CCATC	2 cut(s)	251, 1061
BceAI	ACGGC	2 cut(s)	872, 1024
BciT130I	CCWGG	5 cut(s)	108, 177, 362, 556, 825
BciVI	GTATCC	1 cut(s)	60
BcnI	CCSGG	4 cut(s)	416, 713, 714, 779
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	3 cut(s)	488, 506, 1158
BfmI	CTRYAG	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	1124
BfuAI	ACCTGC	2 cut(s)	410, 581
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	1037
BlsI	GCNGC	1 cut(s)	1038
Bme1390I	CCNGG	9 cut(s)	108, 177, 362, 416, 556, 713, 714, 779, 825
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	289, 688
BmiI	GGNNCC	6 cut(s)	290, 291, 366, 511, 689, 749
BmrFI	CCNGG	9 cut(s)	108, 177, 362, 416, 556, 713, 714, 779, 825
BmsI	GCATC	3 cut(s)	274, 573, 892
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	2 cut(s)	249, 577
BpuMI	CCSGG	4 cut(s)	416, 713, 714, 779
BsaBI	GATNNNNATC	3 cut(s)	441, 663, 921
BsaJI	CCNNGG	7 cut(s)	56, 84, 345, 711, 712, 911, 1040
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 1070
Bse118I	RCCGGY	2 cut(s)	1003, 1094
Bse1I	ACTGG	1 cut(s)	611
Bse8I	GATNNNNATC	3 cut(s)	441, 663, 921
BseBI	CCWGG	5 cut(s)	108, 177, 362, 556, 825
BseDI	CCNNGG	7 cut(s)	56, 84, 345, 711, 712, 911, 1040
BseGI	GGATG	4 cut(s)	664, 678, 811, 1141
BseJI	GATNNNNATC	3 cut(s)	441, 663, 921
BseLI	CCNNNNNNNGG	2 cut(s)	85, 1070
BseMII	CTCAG	4 cut(s)	752, 857, 949, 1106
BseNI	ACTGG	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	1023
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	4 cut(s)	272, 599, 631, 690
BsiEI	CGRYCG	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	6 cut(s)	15, 415, 713, 779, 1004, 1095
BslFI	GGGAC	2 cut(s)	275, 729
BslI	CCNNNNNNNGG	2 cut(s)	85, 1070
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	2 cut(s)	275, 729
BsmI	GAATGC	1 cut(s)	902
BsnI	GGCC	4 cut(s)	272, 599, 631, 690
BsoBI	CYCGRG	1 cut(s)	712
Bsp143I	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
BspACI	CCGC	6 cut(s)	26, 84, 86, 724, 961, 1071
BspANI	GGCC	4 cut(s)	272, 599, 631, 690
BspCNI	CTCAG	4 cut(s)	751, 856, 948, 1107
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	6 cut(s)	290, 291, 366, 511, 689, 749
BspMI	ACCTGC	2 cut(s)	410, 581
BspPI	GGATC	4 cut(s)	431, 550, 917, 939
BsrBI	CCGCTC	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	1003, 1094
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	2 cut(s)	1003, 1094
BssECI	CCNNGG	7 cut(s)	56, 84, 345, 711, 712, 911, 1040
BssMI	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
BssNAI	GTATAC	1 cut(s)	1163
BssT1I	CCWWGG	2 cut(s)	345, 911
Bst1107I	GTATAC	1 cut(s)	1163
Bst2UI	CCWGG	5 cut(s)	108, 177, 362, 556, 825
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	2 cut(s)	138, 642
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	2 cut(s)	252, 588
BstDEI	CTNAG	5 cut(s)	601, 738, 843, 935, 1115
BstDSI	CCRYGG	3 cut(s)	56, 84, 1040
BstF5I	GGATG	4 cut(s)	664, 678, 811, 1141
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	1124
BstHHI	GCGC	1 cut(s)	1123
BstKTI	GATC	6 cut(s)	318, 439, 496, 545, 925, 934
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 212, 339, 596, 707
BstNI	CCWGG	5 cut(s)	108, 177, 362, 556, 825
BstSCI	CCNGG	9 cut(s)	106, 175, 360, 414, 554, 711, 712, 777, 823
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	1023
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BstZ17I	GTATAC	1 cut(s)	1163
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	272, 599, 631, 690
BtgI	CCRYGG	3 cut(s)	56, 84, 1040
BtsCI	GGATG	4 cut(s)	664, 678, 811, 1141
BveI	ACCTGC	2 cut(s)	410, 581
Cac8I	GCNNGC	2 cut(s)	252, 588
CfoI	GCGC	1 cut(s)	1123
Cfr10I	RCCGGY	2 cut(s)	1003, 1094
Cfr13I	GGNCC	2 cut(s)	289, 688
Cfr42I	CCGCGG	1 cut(s)	87
Cfr9I	CCCGGG	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	5 cut(s)	172, 322, 329, 766, 802
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	5 cut(s)	601, 738, 843, 935, 1115
DpnI	GATC	6 cut(s)	317, 438, 495, 544, 924, 933
DpnII	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
Eam1104I	CTCTTC	2 cut(s)	138, 642
EarI	CTCTTC	2 cut(s)	138, 642
EciI	GGCGGA	1 cut(s)	1086
Eco130I	CCWWGG	2 cut(s)	345, 911
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	228, 998
Eco88I	CYCGRG	1 cut(s)	712
EcoO109I	RGGNCCY	2 cut(s)	289, 688
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	5 cut(s)	106, 175, 360, 554, 823
EcoT14I	CCWWGG	2 cut(s)	345, 911
ErhI	CCWWGG	2 cut(s)	345, 911
FaeI	CATG	5 cut(s)	175, 325, 332, 769, 805
FaqI	GGGAC	2 cut(s)	275, 729
FatI	CATG	5 cut(s)	171, 321, 328, 765, 801
FblI	GTMKAC	1 cut(s)	1162
Fnu4HI	GCNGC	1 cut(s)	1037
FokI	GGATG	4 cut(s)	665, 671, 818, 1128
Fsp4HI	GCNGC	1 cut(s)	1037
FspBI	CTAG	3 cut(s)	488, 506, 1158
GlaI	GCGC	1 cut(s)	1122
GluI	GCNGC	1 cut(s)	1037
GsuI	CTGGAG	2 cut(s)	249, 577
HaeII	RGCGCY	1 cut(s)	1124
HaeIII	GGCC	4 cut(s)	272, 599, 631, 690
HapII	CCGG	6 cut(s)	15, 415, 713, 779, 1004, 1095
HhaI	GCGC	1 cut(s)	1123
Hin1II	CATG	5 cut(s)	175, 325, 332, 769, 805
Hin6I	GCGC	1 cut(s)	1121
HinP1I	GCGC	1 cut(s)	1121
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	8 cut(s)	73, 243, 531, 841, 850, 1020, 1045, 1111
HpaII	CCGG	6 cut(s)	15, 415, 713, 779, 1004, 1095
HphI	GGTGA	2 cut(s)	128, 228
Hpy166II	GTNNAC	2 cut(s)	970, 1163
Hpy188I	TCNGA	5 cut(s)	669, 741, 1017, 1116, 1133
Hpy188III	TCNNGA	6 cut(s)	41, 460, 845, 887, 1055, 1064
Hpy8I	GTNNAC	2 cut(s)	970, 1163
HpyAV	CCTTC	2 cut(s)	255, 642
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	5 cut(s)	254, 564, 701, 883, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 212, 339, 596, 707
HpyF3I	CTNAG	5 cut(s)	601, 738, 843, 935, 1115
HpySE526I	ACGT	1 cut(s)	758
Hsp92II	CATG	5 cut(s)	175, 325, 332, 769, 805
HspAI	GCGC	1 cut(s)	1121
KflI	GGGWCCC	1 cut(s)	289
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
LmnI	GCTCC	6 cut(s)	23, 230, 347, 370, 515, 753
Lsp1109I	GCAGC	1 cut(s)	1023
LweI	GCATC	3 cut(s)	274, 573, 892
MaeI	CTAG	3 cut(s)	488, 506, 1158
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	6 cut(s)	41, 733, 887, 938, 983, 1148
MalI	GATC	6 cut(s)	317, 438, 495, 544, 924, 933
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
MboII	GAAGA	7 cut(s)	125, 221, 230, 629, 778, 1001, 1148
MflI	RGATCY	1 cut(s)	931
MluCI	AATT	6 cut(s)	184, 374, 378, 619, 704, 896
MlyI	GAGTC	2 cut(s)	540, 835
MnlI	CCTC	7 cut(s)	57, 576, 701, 763, 821, 1099, 1110
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	2 cut(s)	377, 1100
MspA1I	CMGCKG	2 cut(s)	86, 961
MspI	CCGG	6 cut(s)	15, 415, 713, 779, 1004, 1095
MspR9I	CCNGG	9 cut(s)	108, 177, 362, 416, 556, 713, 714, 779, 825
Mva1269I	GAATGC	1 cut(s)	902
MvaI	CCWGG	5 cut(s)	108, 177, 362, 556, 825
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	11, 212, 339, 596, 707
NciI	CCSGG	4 cut(s)	416, 713, 714, 779
NdeII	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
NlaIII	CATG	5 cut(s)	175, 325, 332, 769, 805
NlaIV	GGNNCC	6 cut(s)	290, 291, 366, 511, 689, 749
NmuCI	GTSAC	2 cut(s)	41, 887
PaqCI	CACCTGC	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	902
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	6 cut(s)	73, 243, 850, 1020, 1045, 1111
PkrI	GCNGC	1 cut(s)	1038
PleI	GAGTC	2 cut(s)	539, 835
PpsI	GAGTC	2 cut(s)	539, 835
PpuMI	RGGWCCY	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	5 cut(s)	106, 175, 360, 554, 823
PspGI	CCWGG	5 cut(s)	106, 175, 360, 554, 823
PspN4I	GGNNCC	6 cut(s)	290, 291, 366, 511, 689, 749
PspPI	GGNCC	2 cut(s)	289, 688
PspPPI	RGGWCCY	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	931
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	377, 1100
SatI	GCNGC	1 cut(s)	1037
Sau3AI	GATC	6 cut(s)	315, 436, 493, 542, 922, 931
Sau96I	GGNCC	2 cut(s)	289, 688
SchI	GAGTC	2 cut(s)	540, 835
ScrFI	CCNGG	9 cut(s)	108, 177, 362, 416, 556, 713, 714, 779, 825
SfaNI	GCATC	3 cut(s)	274, 573, 892
SfcI	CTRYAG	1 cut(s)	274
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	289
SmaI	CCCGGG	1 cut(s)	714
Sse9I	AATT	6 cut(s)	184, 374, 378, 619, 704, 896
SsiI	CCGC	6 cut(s)	26, 84, 86, 724, 961, 1071
SspMI	CTAG	3 cut(s)	488, 506, 1158
StyD4I	CCNGG	9 cut(s)	106, 175, 360, 414, 554, 711, 712, 777, 823
StyI	CCWWGG	2 cut(s)	345, 911
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	2 cut(s)	480, 921
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	6 cut(s)	184, 374, 378, 619, 704, 896
TfiI	GAWTC	6 cut(s)	73, 243, 850, 1020, 1045, 1111
Tru1I	TTAA	2 cut(s)	377, 1100
Tru9I	TTAA	2 cut(s)	377, 1100
TseFI	GTSAC	2 cut(s)	41, 887
TseI	GCWGC	1 cut(s)	1036
Tsp45I	GTSAC	2 cut(s)	41, 887
TspDTI	ATGAA	3 cut(s)	317, 1012, 1167
TspGWI	ACGGA	1 cut(s)	63
TspMI	CCCGGG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	289
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	2 cut(s)	184, 704
XmaI	CCCGGG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	1162
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	3 cut(s)	488, 506, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.