Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

9987581 .. 9989921

Gene Structure 2341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCAGCGATGGTTTCAAACACTGCACAGACTGCTGCCGTTTCTGAAGATCTTCCTCCAGCTTCACCAAGAATCAGGCTTGCTGATGGAAGGTATCTGGCTTATAGAGAAAGTGGGGTCCCCAAGAACAAAGCAAACTACAAGATCATCATTGTTCATGGCTTTGGAAGCTCCAAGGAAATGAGTTTCCTGGCACCCCAAGAATTAATAGATGAGTTGGGGATATATTTTCTGCTATATGATCGTGCTGGTTATGGAGAAAGTGATCCAAATCCAAAGCGTTCGGTCAAGAGTGAAGCCCTTGACATCGAAGAACTGGCTGATCAGTTAGAGTTAGGATTGAAATTTTATGTGATTGGAGTGTCAATGGGATCATATCCCACCTGGAGTTGCATCAAACATATACCACACAGGCTAGCAGGTGTGGCTTTGGTAGTTCCAGTTGTCAATTATAGGTGGCCTTCTCTTCCTGACCATCTGATAAAGGATGATTACAGGAGAAAACTTATCAAATGGGGACTCTTCTTTGCAGAATTTGCCCCTGGACTACTGCGGTGGTGGGTGACTCAGAAATGGCTCCCTTCAACTTCTGTCCTGGAAAGAAATCCGGTATTCTTCAACAGCAGAGACATAGAAGTCCTCAAAACAATTCCAGGCTTCCCAATGCTTTCTCAGGAAAAATTACGACAACAAGGGGTTTTTGATACTCTGCATCATGACTTCAAATTGGCTTTCAGCCGTTGGGATTTCGACCCCATGGATCTCAGCAATCCATTCCCCCAAAACCAGAGCTCTGTTCATATTTGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCTACTTCAAAGATATATTTCATTTAAGCTACCGTGGATTCAGTATCATGAAGTTCCTGACGGTGGGCATTTGATTGTGCATTATGCTGGTTTGTGTGAGGCCATTCTGAGGGCACTTTTGCTTGGAGAAGAACATCTTCATTACAAACCTACTATAGCCAAAATTGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

337

Amino Acids

38.49

Weight (kDa)

6.87

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	193
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	3 cut(s)	260, 379, 768
AcsI	RAATTY	2 cut(s)	344, 533
AcuI	CTGAAG	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	899, 945
AgsI	TTSAA	6 cut(s)	18, 343, 585, 619, 724, 845
AjnI	CCWGG	5 cut(s)	189, 383, 541, 594, 652
AluBI	AGCT	4 cut(s)	62, 171, 792, 865
AluI	AGCT	4 cut(s)	62, 171, 792, 865
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	260, 379, 768
AoxI	GGCC	2 cut(s)	458, 936
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	344, 533
AseI	ATTAAT	1 cut(s)	206
Asp700I	GAANNNNTTC	2 cut(s)	51, 972
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	57, 574
AsuNHI	GCTAGC	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	952
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	794
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	4, 80, 483
BceAI	ACGGC	2 cut(s)	23, 723
BciT130I	CCWGG	5 cut(s)	191, 385, 543, 596, 654
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	990
BfuAI	ACCTGC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	5 cut(s)	191, 385, 543, 596, 654
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	4 cut(s)	119, 120, 195, 578
BmrFI	CCNGG	5 cut(s)	191, 385, 543, 596, 654
BmsI	GCATC	2 cut(s)	402, 721
BmtI	GCTAGC	1 cut(s)	419
BpmI	CTGGAG	2 cut(s)	42, 406
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	174, 541, 756, 869
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	2 cut(s)	899, 945
Bse1I	ACTGG	2 cut(s)	321, 440
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	5 cut(s)	191, 385, 543, 596, 654
BseDI	CCNNGG	4 cut(s)	174, 541, 756, 869
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	899, 945
BseMII	CTCAG	4 cut(s)	581, 686, 778, 935
BseNI	ACTGG	2 cut(s)	321, 440
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	460, 938
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	2 cut(s)	104, 531
BslI	CCNNNNNNNGG	2 cut(s)	899, 945
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	2 cut(s)	104, 531
BsnI	GGCC	2 cut(s)	460, 938
Bsp1286I	GDGCHC	2 cut(s)	794, 952
Bsp143I	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	2 cut(s)	460, 938
BspCNI	CTCAG	4 cut(s)	580, 685, 777, 936
BspHI	TCATGA	2 cut(s)	715, 883
BspLI	GGNNCC	4 cut(s)	119, 120, 195, 578
BspMI	ACCTGC	1 cut(s)	410
BspOI	GCTAGC	1 cut(s)	419
BspPI	GGATC	3 cut(s)	260, 379, 768
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	321, 440
BssECI	CCNNGG	4 cut(s)	174, 541, 756, 869
BssMI	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
BssT1I	CCWWGG	2 cut(s)	174, 756
Bst2UI	CCWGG	5 cut(s)	191, 385, 543, 596, 654
Bst4CI	ACNGT	2 cut(s)	870, 899
Bst6I	CTCTTC	2 cut(s)	471, 527
BstAPI	GCANNNNNTGC	2 cut(s)	32, 536
BstC8I	GCNNGC	3 cut(s)	6, 81, 417
BstDEI	CTNAG	4 cut(s)	567, 672, 764, 944
BstDSI	CCRYGG	2 cut(s)	756, 869
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	7 cut(s)	52, 147, 244, 268, 325, 374, 763
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 168, 425, 536
BstNI	CCWGG	5 cut(s)	191, 385, 543, 596, 654
BstSCI	CCNGG	5 cut(s)	189, 383, 541, 594, 652
BstSFI	CTRYAG	1 cut(s)	990
BstSLI	GKGCMC	1 cut(s)	952
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	49, 760
BstYI	RGATCY	2 cut(s)	49, 760
BsuRI	GGCC	2 cut(s)	460, 938
BtgI	CCRYGG	2 cut(s)	756, 869
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	6, 81, 417
CciI	TCATGA	2 cut(s)	715, 883
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	4 cut(s)	158, 716, 757, 884
DdeI	CTNAG	4 cut(s)	567, 672, 764, 944
DpnI	GATC	7 cut(s)	51, 146, 243, 267, 324, 373, 762
DpnII	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
Eam1104I	CTCTTC	2 cut(s)	471, 527
EarI	CTCTTC	2 cut(s)	471, 527
Ecl136II	GAGCTC	1 cut(s)	792
Eco130I	CCWWGG	2 cut(s)	174, 756
Eco24I	GRGCYC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	5 cut(s)	189, 383, 541, 594, 652
EcoT14I	CCWWGG	2 cut(s)	174, 756
EcoT38I	GRGCYC	1 cut(s)	794
ErhI	CCWWGG	2 cut(s)	174, 756
FaeI	CATG	4 cut(s)	161, 719, 760, 887
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	2 cut(s)	104, 531
FatI	CATG	4 cut(s)	157, 715, 756, 883
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	794
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	2 cut(s)	42, 406
HaeIII	GGCC	2 cut(s)	460, 938
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	4 cut(s)	161, 719, 760, 887
HinfI	GANTC	4 cut(s)	72, 519, 565, 874
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	2 cut(s)	57, 574
Hpy188I	TCNGA	4 cut(s)	46, 480, 570, 945
Hpy188III	TCNNGA	6 cut(s)	289, 470, 674, 716, 884, 893
HpyAV	CCTTC	3 cut(s)	84, 471, 591
HpyCH4III	ACNGT	2 cut(s)	870, 899
HpyCH4V	TGCA	5 cut(s)	26, 393, 530, 712, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 168, 425, 536
HpyF3I	CTNAG	4 cut(s)	567, 672, 764, 944
Hsp92II	CATG	4 cut(s)	161, 719, 760, 887
KflI	GGGWCCC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
LmnI	GCTCC	2 cut(s)	176, 582
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	402, 721
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	7 cut(s)	51, 146, 243, 267, 324, 373, 762
MboI	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
MboII	GAAGA	9 cut(s)	44, 59, 323, 458, 514, 607, 830, 965, 977
MflI	RGATCY	2 cut(s)	49, 760
MhlI	GDGCHC	2 cut(s)	794, 952
MluCI	AATT	8 cut(s)	203, 344, 448, 533, 648, 680, 725, 999
MlyI	GAGTC	2 cut(s)	513, 559
MnlI	CCTC	4 cut(s)	66, 650, 928, 939
MroXI	GAANNNNTTC	2 cut(s)	51, 972
MseI	TTAA	2 cut(s)	206, 861
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	5 cut(s)	191, 385, 543, 596, 654
MvaI	CCWGG	5 cut(s)	191, 385, 543, 596, 654
MwoI	GCNNNNNNNGC	4 cut(s)	32, 168, 425, 536
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	4 cut(s)	161, 719, 760, 887
NlaIV	GGNNCC	4 cut(s)	119, 120, 195, 578
NmuCI	GTSAC	1 cut(s)	562
PagI	TCATGA	2 cut(s)	715, 883
PaqCI	CACCTGC	1 cut(s)	410
PdmI	GAANNNNTTC	2 cut(s)	51, 972
PfeI	GAWTC	2 cut(s)	72, 874
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	2 cut(s)	513, 559
PpsI	GAGTC	2 cut(s)	513, 559
PpuMI	RGGWCCY	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	794
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	5 cut(s)	189, 383, 541, 594, 652
PspGI	CCWGG	5 cut(s)	189, 383, 541, 594, 652
PspN4I	GGNNCC	4 cut(s)	119, 120, 195, 578
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	49, 760
SacI	GAGCTC	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	206, 861
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	7 cut(s)	49, 144, 241, 265, 322, 371, 760
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	513, 559
ScrFI	CCNGG	5 cut(s)	191, 385, 543, 596, 654
SduI	GDGCHC	2 cut(s)	794, 952
SfaNI	GCATC	2 cut(s)	402, 721
SfcI	CTRYAG	1 cut(s)	990
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	8 cut(s)	203, 344, 448, 533, 648, 680, 725, 999
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	794
StyD4I	CCNGG	5 cut(s)	189, 383, 541, 594, 652
StyI	CCWWGG	2 cut(s)	174, 756
TaaI	ACNGT	2 cut(s)	870, 899
TaqI	TCGA	2 cut(s)	309, 750
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	8 cut(s)	203, 344, 448, 533, 648, 680, 725, 999
TfiI	GAWTC	2 cut(s)	72, 874
Tru1I	TTAA	2 cut(s)	206, 861
Tru9I	TTAA	2 cut(s)	206, 861
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	7 cut(s)	146, 788, 831, 846, 900, 965, 996
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	118
VspI	ATTAAT	1 cut(s)	206
XapI	RAATTY	2 cut(s)	344, 533
XmnI	GAANNNNTTC	2 cut(s)	51, 972
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.