Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Reverse (-)

53463470 .. 53465761

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACAGGGATGATATCAAACACAGCTGTGGTGGTGATGGGTTTCTTGGGAATGCTTTACATGGCAACAACTCAGCTTCCACCTCCACAGACCTCTGCTCTGCCTGAAGATCCTCCTCCAACATCTCCAAGAATCAGGCTTGCTGATGGGAGGCATCTGGCTTACAGAGAAAGTGGGGTCCCCAAGAACAAATCAAAGTTCAAGATCATCATAGTTCATGGCTTTGGAAGCTCTAAAGAAATGATTTCCCAGGAAATGATAGATGAGTTGGGGATATATTTTCTGCTATATGACCGGGCTGGGTATGGAGAGAGTGATCCAAATCCAAAGCGTTCAGTGAAGAGTGAAGCCCTTGACATTGAAGAACTAGCTGATCAGTTACAGCTTGGATCAAAATTTTATGTGATTGGAGTGTCAATGGGATCATACTCCACCTGGAGTTGCATCAAATACATCCCACATAGGTTAGCTGGTGTGGCTTTTGTAGTCCCAGTTGTGAATTATAGGTGGCCTTCATTTCCAGACAATCTGATAAAGGATGATTACAGAAGAAAACTAGTTCAATCGGCACTCTGGTTTGCAGACTATGCCCCTGGGCTGATGCAATGGTGGGTGACTCAGAAATGGCTCCCTTCAACTTCTGTCATGGAAAGAAACCCAGTATTCTTCAACACCAGAGACATTGATGTCCTGAAAACAACCCCAGGCTTCCCAATGCTCACTAAGGATAAATTGCGGCAAAGAGGGGTTTTCAATACTCTGCATCTTGACTTTAAAGCAGCTTTCAGCCATTGGGATTTTGATCCAATGGATCTAAGTAATCCATTCCCGCAAAATCAGAGCGCTGTCCACATTTGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCAACTGCAAAGATATATTTCATCGAAACTACCCTGGGTTCAGTATCATGAAGTTCCTGATGGTGGGCATTTGATTGTGCATTATGCTGGTTTATGTGAAGCCATTCTCAGGGCACTTTTGCTTGGTGAAGAATCACTTCACTACAAACCTACTATTGCCAAAATTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

353

Amino Acids

40.18

Weight (kDa)

7.76

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	65 - 321	5.3e-09	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	69 - 322	7.8e-13	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	69 - 322	1.4e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	686
AciI	CCGC	2 cut(s)	736, 830
AclWI	GGATC	6 cut(s)	104, 311, 397, 430, 797, 819
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	126
AfeI	AGCGCT	1 cut(s)	844
AfiI	CCNNNNNNNGG	2 cut(s)	950, 996
AgsI	TTSAA	7 cut(s)	202, 362, 563, 636, 670, 754, 890
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	5 cut(s)	249, 434, 592, 703, 920
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	7 cut(s)	26, 76, 231, 371, 385, 470, 782
AluI	AGCT	7 cut(s)	26, 76, 231, 371, 385, 470, 782
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	6 cut(s)	104, 311, 397, 430, 797, 819
Aor51HI	AGCGCT	1 cut(s)	844
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	1 cut(s)	395
Asp700I	GAANNNNTTC	2 cut(s)	990, 1023
AspLEI	GCGC	1 cut(s)	845
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	46, 625, 1025
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	1003
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	3 cut(s)	31, 140, 941
BciT130I	CCWGG	5 cut(s)	251, 436, 594, 705, 922
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	672
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	2 cut(s)	368, 557
BfoI	RGCGCY	1 cut(s)	846
BisI	GCNGC	2 cut(s)	737, 780
BlsI	GCNGC	2 cut(s)	738, 781
Bme1390I	CCNGG	6 cut(s)	251, 296, 436, 594, 705, 922
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	179, 180, 629
BmrFI	CCNGG	6 cut(s)	251, 296, 436, 594, 705, 922
BmrI	ACTGGG	2 cut(s)	485, 653
BmsI	GCATC	4 cut(s)	163, 453, 591, 772
BmuI	ACTGGG	2 cut(s)	485, 653
BpmI	CTGGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	296
BsaBI	GATNNNNATC	2 cut(s)	321, 801
BsaJI	CCNNGG	6 cut(s)	249, 592, 593, 703, 920, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	950, 996
Bse1I	ACTGG	2 cut(s)	491, 659
Bse3DI	GCAATG	1 cut(s)	611
Bse8I	GATNNNNATC	2 cut(s)	321, 801
BseBI	CCWGG	5 cut(s)	251, 436, 594, 705, 922
BseDI	CCNNGG	6 cut(s)	249, 592, 593, 703, 920, 921
BseGI	GGATG	3 cut(s)	15, 453, 544
BseJI	GATNNNNATC	2 cut(s)	321, 801
BseLI	CCNNNNNNNGG	2 cut(s)	950, 996
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	3 cut(s)	86, 632, 1009
BseNI	ACTGG	2 cut(s)	491, 659
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	164, 473
BslI	CCNNNNNNNGG	2 cut(s)	950, 996
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	2 cut(s)	164, 473
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	1003
Bsp143I	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
BspACI	CCGC	2 cut(s)	736, 830
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	3 cut(s)	85, 631, 1008
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	3 cut(s)	179, 180, 629
BspPI	GGATC	6 cut(s)	104, 311, 397, 430, 797, 819
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	491, 659
BssECI	CCNNGG	6 cut(s)	249, 592, 593, 703, 920, 921
BssMI	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
Bst2UI	CCWGG	5 cut(s)	251, 436, 594, 705, 922
Bst6I	CTCTTC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	5 cut(s)	72, 618, 723, 815, 995
BstF5I	GGATG	3 cut(s)	15, 453, 544
BstH2I	RGCGCY	1 cut(s)	846
BstHHI	GCGC	1 cut(s)	845
BstKTI	GATC	8 cut(s)	112, 207, 319, 376, 392, 425, 805, 814
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 476, 587
BstNI	CCWGG	5 cut(s)	251, 436, 594, 705, 922
BstSCI	CCNGG	6 cut(s)	249, 294, 434, 592, 703, 920
BstSLI	GKGCMC	1 cut(s)	1003
BstV1I	GCAGC	1 cut(s)	791
BstX2I	RGATCY	2 cut(s)	109, 811
BstYI	RGATCY	2 cut(s)	109, 811
BsuRI	GGCC	1 cut(s)	511
BtsCI	GGATG	3 cut(s)	15, 453, 544
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	934
CfoI	GCGC	1 cut(s)	845
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	4 cut(s)	61, 218, 646, 935
DdeI	CTNAG	5 cut(s)	72, 618, 723, 815, 995
DpnI	GATC	8 cut(s)	111, 206, 318, 375, 391, 424, 804, 813
DpnII	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
DraI	TTTAAA	1 cut(s)	775
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	5 cut(s)	249, 434, 592, 703, 920
EcoRV	GATATC	1 cut(s)	15
FaeI	CATG	4 cut(s)	64, 221, 649, 938
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	2 cut(s)	164, 473
FatI	CATG	4 cut(s)	60, 217, 645, 934
FauI	CCCGC	1 cut(s)	837
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	737, 780
FokI	GGATG	3 cut(s)	22, 440, 551
Fsp4HI	GCNGC	2 cut(s)	737, 780
FspBI	CTAG	2 cut(s)	368, 557
GlaI	GCGC	1 cut(s)	844
GluI	GCNGC	2 cut(s)	737, 780
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	457
HaeII	RGCGCY	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	845
Hin1II	CATG	4 cut(s)	64, 221, 649, 938
Hin6I	GCGC	1 cut(s)	843
HinP1I	GCGC	1 cut(s)	843
HinfI	GANTC	3 cut(s)	132, 616, 1019
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	3 cut(s)	46, 625, 1025
Hpy166II	GTNNAC	1 cut(s)	850
Hpy188I	TCNGA	3 cut(s)	531, 621, 840
Hpy188III	TCNNGA	6 cut(s)	202, 521, 691, 767, 935, 944
Hpy8I	GTNNAC	1 cut(s)	850
HpyAV	CCTTC	2 cut(s)	522, 642
HpyCH4V	TGCA	6 cut(s)	444, 581, 604, 763, 895, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 476, 587
HpyF3I	CTNAG	5 cut(s)	72, 618, 723, 815, 995
Hsp92II	CATG	4 cut(s)	64, 221, 649, 938
HspAI	GCGC	1 cut(s)	843
KflI	GGGWCCC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
LmnI	GCTCC	1 cut(s)	633
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	4 cut(s)	163, 453, 591, 772
MaeI	CTAG	2 cut(s)	368, 557
MaeIII	GTNAC	2 cut(s)	378, 613
MalI	GATC	8 cut(s)	111, 206, 318, 375, 391, 424, 804, 813
MboI	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
MboII	GAAGA	7 cut(s)	119, 352, 374, 561, 658, 881, 1028
MflI	RGATCY	2 cut(s)	109, 811
MhlI	GDGCHC	1 cut(s)	1003
MluCI	AATT	4 cut(s)	395, 499, 731, 1050
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	93, 103, 123, 126, 144, 737
MroXI	GAANNNNTTC	2 cut(s)	990, 1023
MseI	TTAA	1 cut(s)	774
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	6 cut(s)	251, 296, 436, 594, 705, 922
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	5 cut(s)	251, 436, 594, 705, 922
MwoI	GCNNNNNNNGC	3 cut(s)	228, 476, 587
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
NlaIII	CATG	4 cut(s)	64, 221, 649, 938
NlaIV	GGNNCC	3 cut(s)	179, 180, 629
NmuCI	GTSAC	1 cut(s)	613
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	934
PasI	CCCWGGG	2 cut(s)	593, 921
PctI	GAATGC	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	990, 1023
PfeI	GAWTC	2 cut(s)	132, 1019
PkrI	GCNGC	2 cut(s)	738, 781
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	5 cut(s)	249, 434, 592, 703, 920
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	5 cut(s)	249, 434, 592, 703, 920
PspN4I	GGNNCC	3 cut(s)	179, 180, 629
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	109, 811
PvuII	CAGCTG	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	2 cut(s)	737, 780
Sau3AI	GATC	8 cut(s)	109, 204, 316, 373, 389, 422, 802, 811
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	6 cut(s)	251, 296, 436, 594, 705, 922
SduI	GDGCHC	1 cut(s)	1003
SfaNI	GCATC	4 cut(s)	163, 453, 591, 772
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	4 cut(s)	395, 499, 731, 1050
SsiI	CCGC	2 cut(s)	736, 830
SspMI	CTAG	2 cut(s)	368, 557
StyD4I	CCNGG	6 cut(s)	249, 294, 434, 592, 703, 920
TaqI	TCGA	1 cut(s)	911
TasI	AATT	4 cut(s)	395, 499, 731, 1050
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	2 cut(s)	132, 1019
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	5 cut(s)	206, 504, 882, 897, 951
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	990, 1023
XspI	CTAG	2 cut(s)	368, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.