Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

8575439 .. 8577236

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCCGGGAAGATTTCAAAACCAAGCGATGTGCCTGAAGAAGCAGAAGAAGTTGCTGCAGCTTCACCAAGAATCAAGCTTGCAGATGGACGGCATCTGGCTTACAGAGAAAGCGGGGTCCCCAAGAGCAAGGCAAACTACAAGATCATCATGGTTCATGGCTTTGGAAGCTCAAAGGAAATGAGTTTCCTCGCTCCCCAAGAATTAATTGATGAGTTGGGGATATATTTCCTGTTCTACGATCGGGCTGGTTATGGAGAAAGTGATCCGAATCCAAAACGCTCGGTCAAGAGTGAAGCCCTTGACATCGAACAGCTAGCCGATCAGTTAGAGTTAGGGTCAAAGTTTTATGTCATTGGAGTCTCAATGGGATCATATTCCACCTGGAGTTGCATCAAACATATACCACACAGGCTCGCAGGTGTGGCCTTAGTAGTTCCAGTTGTGAATTACCGGTGGCCTTCTCTTCCCGAGAAACTAATAAAGGATGATTACCGCAGGAAACTCATACATTGGGGACTCTTGTTTGCAGAATTTGCCCCGGGATTACTGCGGTGGTGGGTAACTCAGAAATGGCTCCCCTCAACGTCTGTCATGGAAAGAAACCCGGTATTCTTCAACACCAAAGACATGGATGTCCTGAAAGTAATACCAGGGTTCCCAATGCTCACTCAGGAGAAGCTACGACAACGGGTGGTTTTCGATACTCTGCATCATGACTTCAAATTGGCTTTCACCCCGTGGGATTTTGATCCAATGGATCTCAGTAACCCATTCCCGCAAAACCAGCGCTCTGTTCACATCTGGCAAGGTTACGAAGATAAAGTTGTGCCGTTTCAACTCCAAAGATATGTTTCAAGTAAGCTACCATGGATTCAGTATCATGAAGTTCCTGATGGTGGACATTTGATTGTGCATTATACTGGTTTATGTGAGGCGATTCTGAGGGCGCTTTTGCTCGGAGAAGAACATCCCCATTACAAACCTAATATACCCAAAATTGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

337

Amino Acids

38.58

Weight (kDa)

7.24

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	410
AciI	CCGC	4 cut(s)	114, 496, 553, 779
AclWI	GGATC	4 cut(s)	260, 379, 746, 768
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	741
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	899
AgeI	ACCGGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	18, 619, 724, 839, 858
AjnI	CCWGG	2 cut(s)	383, 652
AluBI	AGCT	6 cut(s)	62, 79, 171, 316, 682, 865
AluI	AGCT	6 cut(s)	62, 79, 171, 316, 682, 865
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	4 cut(s)	260, 379, 746, 768
Ama87I	CYCGRG	3 cut(s)	5, 470, 541
Aor51HI	AGCGCT	1 cut(s)	791
AoxI	GGCC	2 cut(s)	426, 458
ApeKI	GCWGC	2 cut(s)	56, 59
ApoI	RAATTY	1 cut(s)	533
AseI	ATTAAT	1 cut(s)	206
AsiGI	ACCGGT	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	792, 952
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	5 cut(s)	6, 7, 542, 543, 608
AsuHPI	GGTGA	2 cut(s)	57, 727
AsuNHI	GCTAGC	1 cut(s)	316
AvaI	CYCGRG	3 cut(s)	5, 470, 541
AvaII	GGWCC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	43, 71
BccI	CCATC	2 cut(s)	80, 890
BceAI	ACGGC	2 cut(s)	107, 817
BciT130I	CCWGG	2 cut(s)	385, 654
BcnI	CCSGG	5 cut(s)	6, 7, 542, 543, 608
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	2 cut(s)	793, 953
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
Bme1390I	CCNGG	7 cut(s)	6, 7, 385, 542, 543, 608, 654
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	3 cut(s)	5, 470, 541
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	4 cut(s)	119, 120, 578, 659
BmrFI	CCNGG	7 cut(s)	6, 7, 385, 542, 543, 608, 654
BmsI	GCATC	3 cut(s)	103, 402, 721
BmtI	GCTAGC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	406
BpuMI	CCSGG	5 cut(s)	6, 7, 542, 543, 608
BsaBI	GATNNNNATC	2 cut(s)	270, 750
BsaJI	CCNNGG	6 cut(s)	5, 540, 541, 653, 740, 869
BsaWI	WCCGGW	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	440, 928
Bse8I	GATNNNNATC	2 cut(s)	270, 750
BseBI	CCWGG	2 cut(s)	385, 654
BseDI	CCNNGG	6 cut(s)	5, 540, 541, 653, 740, 869
BseGI	GGATG	3 cut(s)	493, 640, 970
BseJI	GATNNNNATC	2 cut(s)	270, 750
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMII	CTCAG	4 cut(s)	581, 686, 778, 935
BseNI	ACTGG	2 cut(s)	440, 928
BseXI	GCAGC	2 cut(s)	43, 71
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	428, 460
BshTI	ACCGGT	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	244
BsiHKCI	CYCGRG	3 cut(s)	5, 470, 541
BsiSI	CCGG	4 cut(s)	6, 454, 542, 608
BslFI	GGGAC	2 cut(s)	104, 531
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	104, 531
BsnI	GGCC	2 cut(s)	428, 460
BsoBI	CYCGRG	3 cut(s)	5, 470, 541
Bsp143I	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
Bsp19I	CCATGG	1 cut(s)	869
BspACI	CCGC	4 cut(s)	114, 496, 553, 779
BspANI	GGCC	2 cut(s)	428, 460
BspCNI	CTCAG	4 cut(s)	580, 685, 777, 936
BspHI	TCATGA	2 cut(s)	715, 883
BspLI	GGNNCC	4 cut(s)	119, 120, 578, 659
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	410
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	4 cut(s)	260, 379, 746, 768
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	440, 928
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	6 cut(s)	5, 540, 541, 653, 740, 869
BssMI	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
BssT1I	CCWWGG	1 cut(s)	869
Bst2UI	CCWGG	2 cut(s)	385, 654
Bst6I	CTCTTC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	81, 318, 417
BstDEI	CTNAG	5 cut(s)	430, 567, 672, 764, 944
BstDSI	CCRYGG	2 cut(s)	740, 869
BstF5I	GGATG	3 cut(s)	493, 640, 970
BstH2I	RGCGCY	2 cut(s)	793, 953
BstHHI	GCGC	2 cut(s)	792, 952
BstKTI	GATC	7 cut(s)	147, 244, 268, 325, 374, 754, 763
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 425, 536, 787
BstNI	CCWGG	2 cut(s)	385, 654
BstSCI	CCNGG	7 cut(s)	4, 5, 383, 540, 541, 606, 652
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	43, 71
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	428, 460
BtgI	CCRYGG	2 cut(s)	740, 869
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	493, 640, 970
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	81, 318, 417
CciI	TCATGA	2 cut(s)	715, 883
CfoI	GCGC	2 cut(s)	792, 952
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	118
Cfr9I	CCCGGG	2 cut(s)	5, 541
CspAI	ACCGGT	1 cut(s)	453
CviAII	CATG	8 cut(s)	151, 158, 595, 631, 716, 870, 884, 1008
DdeI	CTNAG	5 cut(s)	430, 567, 672, 764, 944
DpnI	GATC	7 cut(s)	146, 243, 267, 324, 373, 753, 762
DpnII	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
DraIII	CACNNNGTG	1 cut(s)	741
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	869
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	791
Eco57I	CTGAAG	1 cut(s)	57
Eco88I	CYCGRG	3 cut(s)	5, 470, 541
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	383, 652
EcoT14I	CCWWGG	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	869
FaeI	CATG	8 cut(s)	154, 161, 598, 634, 719, 873, 887, 1011
FaqI	GGGAC	2 cut(s)	104, 531
FatI	CATG	8 cut(s)	150, 157, 594, 630, 715, 869, 883, 1007
FauI	CCCGC	2 cut(s)	107, 786
Fnu4HI	GCNGC	2 cut(s)	57, 60
FokI	GGATG	3 cut(s)	500, 647, 957
Fsp4HI	GCNGC	2 cut(s)	57, 60
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	2 cut(s)	791, 951
GluI	GCNGC	2 cut(s)	57, 60
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	2 cut(s)	793, 953
HaeIII	GGCC	2 cut(s)	428, 460
HapII	CCGG	4 cut(s)	6, 454, 542, 608
HhaI	GCGC	2 cut(s)	792, 952
Hin1II	CATG	8 cut(s)	154, 161, 598, 634, 719, 873, 887, 1011
Hin6I	GCGC	2 cut(s)	790, 950
HinP1I	GCGC	2 cut(s)	790, 950
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	6 cut(s)	72, 271, 360, 519, 874, 940
HpaII	CCGG	4 cut(s)	6, 454, 542, 608
HphI	GGTGA	2 cut(s)	57, 727
Hpy166II	GTNNAC	2 cut(s)	799, 902
Hpy188I	TCNGA	4 cut(s)	270, 570, 945, 962
Hpy188III	TCNNGA	7 cut(s)	289, 470, 640, 674, 716, 884, 893
Hpy8I	GTNNAC	2 cut(s)	799, 902
HpyAV	CCTTC	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	6 cut(s)	59, 83, 393, 530, 712, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 425, 536, 787
HpyF3I	CTNAG	5 cut(s)	430, 567, 672, 764, 944
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	8 cut(s)	154, 161, 598, 634, 719, 873, 887, 1011
HspAI	GCGC	2 cut(s)	790, 950
KflI	GGGWCCC	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
LmnI	GCTCC	2 cut(s)	199, 582
Lsp1109I	GCAGC	2 cut(s)	43, 71
LweI	GCATC	3 cut(s)	103, 402, 721
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	3 cut(s)	562, 767, 812
MalI	GATC	7 cut(s)	146, 243, 267, 324, 373, 753, 762
MboI	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
MboII	GAAGA	7 cut(s)	22, 50, 59, 458, 607, 830, 977
MflI	RGATCY	1 cut(s)	760
MluCI	AATT	6 cut(s)	203, 207, 448, 533, 725, 999
MlyI	GAGTC	2 cut(s)	369, 513
MnlI	CCTC	4 cut(s)	200, 592, 928, 939
MseI	TTAA	1 cut(s)	206
MspI	CCGG	4 cut(s)	6, 454, 542, 608
MspR9I	CCNGG	7 cut(s)	6, 7, 385, 542, 543, 608, 654
MvaI	CCWGG	2 cut(s)	385, 654
MwoI	GCNNNNNNNGC	4 cut(s)	168, 425, 536, 787
NciI	CCSGG	5 cut(s)	6, 7, 542, 543, 608
NcoI	CCATGG	1 cut(s)	869
NdeII	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
NheI	GCTAGC	1 cut(s)	316
NlaIII	CATG	8 cut(s)	154, 161, 598, 634, 719, 873, 887, 1011
NlaIV	GGNNCC	4 cut(s)	119, 120, 578, 659
PagI	TCATGA	2 cut(s)	715, 883
PaqCI	CACCTGC	1 cut(s)	410
PfeI	GAWTC	4 cut(s)	72, 271, 874, 940
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	58, 61
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	2 cut(s)	368, 513
PpsI	GAGTC	2 cut(s)	368, 513
PpuMI	RGGWCCY	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	383, 652
PspGI	CCWGG	2 cut(s)	383, 652
PspN4I	GGNNCC	4 cut(s)	119, 120, 578, 659
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	760
PvuI	CGATCG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	7 cut(s)	144, 241, 265, 322, 371, 751, 760
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	369, 513
ScrFI	CCNGG	7 cut(s)	6, 7, 385, 542, 543, 608, 654
SfaNI	GCATC	3 cut(s)	103, 402, 721
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	118
SmaI	CCCGGG	2 cut(s)	7, 543
Sse9I	AATT	6 cut(s)	203, 207, 448, 533, 725, 999
SsiI	CCGC	4 cut(s)	114, 496, 553, 779
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	7 cut(s)	4, 5, 383, 540, 541, 606, 652
StyI	CCWWGG	1 cut(s)	869
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	2 cut(s)	309, 702
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	6 cut(s)	203, 207, 448, 533, 725, 999
TfiI	GAWTC	4 cut(s)	72, 271, 874, 940
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	2 cut(s)	56, 59
TspDTI	ATGAA	2 cut(s)	146, 900
TspMI	CCCGGG	2 cut(s)	5, 541
VpaK11BI	GGWCC	1 cut(s)	118
VspI	ATTAAT	1 cut(s)	206
XapI	RAATTY	1 cut(s)	533
XmaI	CCCGGG	2 cut(s)	5, 541
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.