Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

40857576 .. 40859792

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTGGCCGGTCAAAACACAAGAACCCATCTTGGAAATCCCTCAAGCCCCATCAGAGAGACTCCCCACCATGACAGGGATGATATCAAACACAGCTGTGGTGGTGATGGGTTTCTTGGGAATGCTCTACATGGCAACAACTCAGCTTCCACCTCCACAGACCTCTGCTCTGCCTGAAGATCCTCCTCCAACATCTCCAAGAATCAGGCTTGCTGATGGGAGGCATCTGGCTTACAGAGAAACTGGGGTCCCCAAGAACAACTCAAAGTTCAAGATCATCATAGTTCATGGCTTTGGAAGCTCTAAAGAAATGAGTTTCCAGGCACCCCAAGAAATGATAGATGAGTTGGGGATATATTTTCTGCTATATGACCGGGCTGGGTATGGAGAGAGTGATCCAAATCCAAAGCGTTCAGTGAAGAGTGAAGCCCTTGATATCGAAGAACTAGCTGATCAGTTAGAGCTTGGATCAAAATTTTATGTGATTGGAGTGTCAATGGGATCATACTCCACCTGGAGTTGCATCAAATACATCCCACATAGGTTAGCTGGTGTGGCTTTTGTAGTCCCAGTTGTGAATTATAGGTGGCCTTCATTTCCAGACAATCTGATCAAGGATGATTACAGAAGAAAACTAGTTCAATCGGCACTCTGGTTTGCAGACTATGCCCCTGGGCTGATGCAATGGTGGGTGACTCAGAAATGGCTCCCGTCAACTTCTGTCATGGAAAGAAACCCGGTATTCTTCAACACCAGAGACATTGATATCCTGAAAACAACCCCAGGCTTCCCAATGCTCACTAAGGATAAATTGCGGCAAAGAGGGGTTTTCAATACTCTGCATCTTGACTTTAAAGCAGCTTTCAGCCATTGGGATTTTGATCCAATGGATCTAAGTAATCCATTCCCGCAAAATCAGAGCGGTGTCCACATTTGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCAACTGCAAAGATATATTTCATCGAAACTACCCTGGATTCAGTATCATGAAGTTCCTGATGGTGGGCATTTGATTGTGCATTATGCTGGTTTATGTGAAGCCATTCTCAGGGCACTTTTGCTTGGTGAAGAATCACTTCACTACAAACCTACGATTGCCAAAATTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

379

Amino Acids

43.17

Weight (kDa)

6.56

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	89 - 344	1.7e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	92 - 348	2.7e-12	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	92 - 348	1.7e-09	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	921
AciI	CCGC	3 cut(s)	814, 908, 921
AclWI	GGATC	6 cut(s)	173, 389, 475, 508, 875, 897
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	75, 1028, 1074
AgsI	TTSAA	5 cut(s)	271, 641, 748, 832, 968
AhlI	ACTAGT	1 cut(s)	634
AjnI	CCWGG	5 cut(s)	318, 512, 670, 781, 998
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	7 cut(s)	95, 145, 300, 449, 463, 548, 860
AluI	AGCT	7 cut(s)	95, 145, 300, 449, 463, 548, 860
Alw26I	GTCTC	2 cut(s)	52, 750
AlwI	GGATC	6 cut(s)	173, 389, 475, 508, 875, 897
AoxI	GGCC	2 cut(s)	5, 587
ApeKI	GCWGC	1 cut(s)	857
ApoI	RAATTY	1 cut(s)	473
Asp700I	GAANNNNTTC	2 cut(s)	1068, 1101
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	2 cut(s)	374, 737
AsuHPI	GGTGA	3 cut(s)	115, 703, 1103
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	1081
BanI	GGYRCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	869
BccI	CCATC	5 cut(s)	35, 58, 100, 209, 1019
BciT130I	CCWGG	5 cut(s)	320, 514, 672, 783, 1000
BclI	TGATCA	2 cut(s)	451, 609
BcnI	CCSGG	2 cut(s)	374, 737
BcoDI	GTCTC	2 cut(s)	52, 750
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	2 cut(s)	446, 635
BisI	GCNGC	2 cut(s)	815, 858
BlsI	GCNGC	2 cut(s)	816, 859
Bme1390I	CCNGG	7 cut(s)	320, 374, 514, 672, 737, 783, 1000
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	4 cut(s)	248, 249, 324, 707
BmrFI	CCNGG	7 cut(s)	320, 374, 514, 672, 737, 783, 1000
BmrI	ACTGGG	2 cut(s)	252, 563
BmsI	GCATC	4 cut(s)	232, 531, 669, 850
BmuI	ACTGGG	2 cut(s)	252, 563
BpmI	CTGGAG	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	374, 737
BsaBI	GATNNNNATC	2 cut(s)	399, 879
BsaJI	CCNNGG	4 cut(s)	670, 671, 781, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 1028, 1074
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	247, 569
Bse3DI	GCAATG	1 cut(s)	689
Bse8I	GATNNNNATC	2 cut(s)	399, 879
BseBI	CCWGG	5 cut(s)	320, 514, 672, 783, 1000
BseDI	CCNNGG	4 cut(s)	670, 671, 781, 998
BseGI	GGATG	3 cut(s)	84, 531, 622
BseJI	GATNNNNATC	2 cut(s)	399, 879
BseLI	CCNNNNNNNGG	3 cut(s)	75, 1028, 1074
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	3 cut(s)	155, 710, 1087
BseNI	ACTGG	2 cut(s)	247, 569
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	1081
BseXI	GCAGC	1 cut(s)	869
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	7, 589
BshNI	GGYRCC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	8, 373, 737
BslFI	GGGAC	2 cut(s)	233, 551
BslI	CCNNNNNNNGG	3 cut(s)	75, 1028, 1074
BsmAI	GTCTC	2 cut(s)	52, 750
BsmFI	GGGAC	2 cut(s)	233, 551
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	7, 589
Bsp1286I	GDGCHC	1 cut(s)	1081
Bsp143I	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
BspACI	CCGC	3 cut(s)	814, 908, 921
BspANI	GGCC	2 cut(s)	7, 589
BspCNI	CTCAG	3 cut(s)	154, 709, 1086
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	4 cut(s)	248, 249, 324, 707
BspPI	GGATC	6 cut(s)	173, 389, 475, 508, 875, 897
BspT107I	GGYRCC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	689
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	247, 569
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	4 cut(s)	670, 671, 781, 998
BssMI	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
Bst2UI	CCWGG	5 cut(s)	320, 514, 672, 783, 1000
Bst6I	CTCTTC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	5 cut(s)	141, 696, 801, 893, 1073
BstF5I	GGATG	3 cut(s)	84, 531, 622
BstKTI	GATC	9 cut(s)	181, 276, 397, 454, 470, 503, 612, 883, 892
BstMAI	GTCTC	2 cut(s)	52, 750
BstMBI	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 554, 665
BstNI	CCWGG	5 cut(s)	320, 514, 672, 783, 1000
BstSCI	CCNGG	7 cut(s)	318, 372, 512, 670, 735, 781, 998
BstSLI	GKGCMC	1 cut(s)	1081
BstV1I	GCAGC	1 cut(s)	869
BstX2I	RGATCY	2 cut(s)	178, 889
BstYI	RGATCY	2 cut(s)	178, 889
BsuRI	GGCC	2 cut(s)	7, 589
BtsCI	GGATG	3 cut(s)	84, 531, 622
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	1012
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	5 cut(s)	70, 130, 287, 724, 1013
DdeI	CTNAG	5 cut(s)	141, 696, 801, 893, 1073
DpnI	GATC	9 cut(s)	180, 275, 396, 453, 469, 502, 611, 882, 891
DpnII	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
DraI	TTTAAA	1 cut(s)	853
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco32I	GATATC	3 cut(s)	84, 436, 766
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	5 cut(s)	318, 512, 670, 781, 998
EcoRV	GATATC	3 cut(s)	84, 436, 766
FaeI	CATG	5 cut(s)	73, 133, 290, 727, 1016
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FaqI	GGGAC	2 cut(s)	233, 551
FatI	CATG	5 cut(s)	69, 129, 286, 723, 1012
FauI	CCCGC	1 cut(s)	915
FbaI	TGATCA	2 cut(s)	451, 609
Fnu4HI	GCNGC	2 cut(s)	815, 858
FokI	GGATG	3 cut(s)	91, 518, 629
Fsp4HI	GCNGC	2 cut(s)	815, 858
FspBI	CTAG	2 cut(s)	446, 635
GluI	GCNGC	2 cut(s)	815, 858
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	535
HaeIII	GGCC	2 cut(s)	7, 589
HapII	CCGG	3 cut(s)	8, 373, 737
Hin1II	CATG	5 cut(s)	73, 133, 290, 727, 1016
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	5 cut(s)	60, 201, 694, 1003, 1097
HpaII	CCGG	3 cut(s)	8, 373, 737
HphI	GGTGA	3 cut(s)	115, 703, 1103
Hpy166II	GTNNAC	2 cut(s)	714, 928
Hpy188I	TCNGA	4 cut(s)	55, 609, 699, 918
Hpy188III	TCNNGA	6 cut(s)	271, 599, 769, 845, 1013, 1022
Hpy8I	GTNNAC	2 cut(s)	714, 928
HpyAV	CCTTC	1 cut(s)	600
HpyCH4V	TGCA	6 cut(s)	522, 659, 682, 841, 973, 1045
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 554, 665
HpyF3I	CTNAG	5 cut(s)	141, 696, 801, 893, 1073
Hsp92II	CATG	5 cut(s)	73, 133, 290, 727, 1016
KflI	GGGWCCC	1 cut(s)	247
Ksp22I	TGATCA	2 cut(s)	451, 609
Kzo9I	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
LmnI	GCTCC	1 cut(s)	711
Lsp1109I	GCAGC	1 cut(s)	869
LweI	GCATC	4 cut(s)	232, 531, 669, 850
MaeI	CTAG	2 cut(s)	446, 635
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	9 cut(s)	180, 275, 396, 453, 469, 502, 611, 882, 891
MbiI	CCGCTC	1 cut(s)	921
MboI	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
MboII	GAAGA	7 cut(s)	188, 430, 452, 639, 736, 959, 1106
MflI	RGATCY	2 cut(s)	178, 889
MhlI	GDGCHC	1 cut(s)	1081
MluCI	AATT	4 cut(s)	473, 577, 809, 1128
MlyI	GAGTC	2 cut(s)	54, 688
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	7 cut(s)	51, 162, 172, 192, 195, 213, 815
MroXI	GAANNNNTTC	2 cut(s)	1068, 1101
MseI	TTAA	1 cut(s)	852
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	3 cut(s)	8, 373, 737
MspR9I	CCNGG	7 cut(s)	320, 374, 514, 672, 737, 783, 1000
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	5 cut(s)	320, 514, 672, 783, 1000
MwoI	GCNNNNNNNGC	3 cut(s)	297, 554, 665
NciI	CCSGG	2 cut(s)	374, 737
NdeII	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
NlaIII	CATG	5 cut(s)	73, 133, 290, 727, 1016
NlaIV	GGNNCC	4 cut(s)	248, 249, 324, 707
NmuCI	GTSAC	1 cut(s)	691
OliI	CACNNNNGTG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	1012
PasI	CCCWGGG	1 cut(s)	671
PctI	GAATGC	1 cut(s)	126
PdmI	GAANNNNTTC	2 cut(s)	1068, 1101
PfeI	GAWTC	3 cut(s)	201, 1003, 1097
PkrI	GCNGC	2 cut(s)	816, 859
PleI	GAGTC	2 cut(s)	54, 688
PpsI	GAGTC	2 cut(s)	54, 688
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	5 cut(s)	318, 512, 670, 781, 998
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	5 cut(s)	318, 512, 670, 781, 998
PspN4I	GGNNCC	4 cut(s)	248, 249, 324, 707
PspPI	GGNCC	1 cut(s)	247
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	178, 889
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	852
SatI	GCNGC	2 cut(s)	815, 858
Sau3AI	GATC	9 cut(s)	178, 273, 394, 451, 467, 500, 609, 880, 889
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	2 cut(s)	54, 688
ScrFI	CCNGG	7 cut(s)	320, 374, 514, 672, 737, 783, 1000
SduI	GDGCHC	1 cut(s)	1081
SfaNI	GCATC	4 cut(s)	232, 531, 669, 850
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	4 cut(s)	473, 577, 809, 1128
SsiI	CCGC	3 cut(s)	814, 908, 921
SspMI	CTAG	2 cut(s)	446, 635
StyD4I	CCNGG	7 cut(s)	318, 372, 512, 670, 735, 781, 998
TaqI	TCGA	2 cut(s)	438, 989
TasI	AATT	4 cut(s)	473, 577, 809, 1128
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	3 cut(s)	201, 1003, 1097
Tru1I	TTAA	1 cut(s)	852
Tru9I	TTAA	1 cut(s)	852
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	5 cut(s)	275, 582, 960, 975, 1029
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	473
XmnI	GAANNNNTTC	2 cut(s)	1068, 1101
XspI	CTAG	2 cut(s)	446, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.