Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

16654423 .. 16657416

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1163900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACGGCACAGAAGCACCTAACTGCATCAGACGCTGCTGCTTCGATCTCACCTGCATCAGAGGGTGCTGCTTCAATCTCACAAATGATTGGAAAGAATTCAAAAACAAGTGCTGTGGCTGAAGAAGCAGAAGAAGTTGCTGCAGCTTCACCAAGAATAAAGCTTGCAGATGGAAGGCATCTGGCCTACAGAGAAAGTGGGGTCCCCAAGAACAAGGCAAACTACAAGATCATCATGGTTCATGGCTTTGGAAGCTCCAAGGAAATGAGTTTCCTGGCTCCCCAAGAATTGATTGATGAGTTGGGGATATATTTCCTGCTCTACGACCGGGCAGGTTATGGAGAAAGTGATCCAAATCCTAAGCGTTCGGTCAAGAGTGAAGCCCTTGACATCGAACAACTAGCCGATCGGTTAGAGCTAGGCTCGAAGTTTTATGTCATTGGAGTCTCAATGGGATCATATTCCACCTGGAGTTGCATCAAACATATACCACACAGGCTCGCAGGTGTGGCCTTAGTAGTTCCAGTTGTCAATTACCAATGGCCTTCTCTTCCCAAGAAACTGATAAAGGATGATTATCGGAGAAGACTCATCCATTGGGGCCTCTTGTTTGCAGAATTTGCCCCGGGACTACTGCGGTGGTGGGTAACTCAGAAGTGGCTCCCCTCAACGTCTGTCATGGAAAGAAACCCAGTATTCTTCAGCAGCAAAGACATGGATGTCCTCAAAATAATACCAGGCTTCCCAATGCTGACTCAGGAGAATCTACGGCAACGGGTGGTTTTCAATACTCTGCATCGTGACTTCAAATTGGCATTCACTCCTTGGGATTTCGATCCAATGGATCTCAGCAACCCATTCCCACAAAACCAGCGGTCTGTTCACATTTGGCAAGGTTACGAAGATAAGGTTGTGCCGTTTCAACTTCAGAGATTCGTTTCAAGTAAGCTGCCGTGGATTCAGTATCACGAAGTTCCCGATGGCGGACATTTGATTGTGCATTATGCCGGTTTAAGTGAGGCGATTCTGAGGGCGCTTTTGCTCGGAGAAGAACATCCTCATTACAAACCTAGTATACCCAAACTTGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

365

Amino Acids

41.11

Weight (kDa)

8.7

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	75 - 251	1.6e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	77 - 333	4.5e-13	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	77 - 193	3.7e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	61, 494
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc36I	ACCTGC	3 cut(s)	61, 323, 494
AccI	GTMKAC	1 cut(s)	1075
AciI	CCGC	3 cut(s)	637, 874, 984
AclWI	GGATC	4 cut(s)	344, 463, 830, 852
AcsI	RAATTY	2 cut(s)	97, 617
AcuI	CTGAAG	3 cut(s)	141, 685, 911
AfiI	CCNNNNNNNGG	1 cut(s)	983
AgsI	TTSAA	6 cut(s)	75, 102, 787, 808, 923, 942
AjnI	CCWGG	3 cut(s)	273, 467, 736
AluBI	AGCT	5 cut(s)	146, 163, 255, 418, 949
AluI	AGCT	5 cut(s)	146, 163, 255, 418, 949
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	4 cut(s)	344, 463, 830, 852
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	625
AoxI	GGCC	4 cut(s)	183, 510, 542, 601
ApeKI	GCWGC	7 cut(s)	35, 38, 68, 140, 143, 705, 949
ApoI	RAATTY	2 cut(s)	97, 617
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	1036
AspS9I	GGNCC	2 cut(s)	202, 601
AsuC2I	CCSGG	3 cut(s)	329, 626, 627
AsuHPI	GGTGA	2 cut(s)	42, 141
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	592
BbvI	GCAGC	7 cut(s)	22, 25, 55, 127, 155, 717, 936
BccI	CCATC	2 cut(s)	164, 974
BceAI	ACGGC	4 cut(s)	21, 785, 901, 937
BciT130I	CCWGG	3 cut(s)	275, 469, 738
BcnI	CCSGG	3 cut(s)	329, 626, 627
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	3 cut(s)	401, 419, 1071
BfmI	CTRYAG	2 cut(s)	141, 187
BfoI	RGCGCY	1 cut(s)	1037
BfuAI	ACCTGC	3 cut(s)	61, 323, 494
BisI	GCNGC	7 cut(s)	36, 39, 69, 141, 144, 706, 950
BlsI	GCNGC	7 cut(s)	37, 40, 70, 142, 145, 707, 951
Bme1390I	CCNGG	6 cut(s)	275, 329, 469, 626, 627, 738
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	202, 601
BmiI	GGNNCC	5 cut(s)	203, 204, 279, 602, 662
BmrFI	CCNGG	6 cut(s)	275, 329, 469, 626, 627, 738
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	5 cut(s)	35, 65, 187, 486, 805
BmuI	ACTGGG	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	3 cut(s)	329, 626, 627
BsaBI	GATNNNNATC	3 cut(s)	354, 576, 834
BsaJI	CCNNGG	5 cut(s)	258, 624, 625, 824, 953
Bsc4I	CCNNNNNNNGG	1 cut(s)	983
Bse118I	RCCGGY	1 cut(s)	1007
Bse1I	ACTGG	2 cut(s)	524, 692
Bse8I	GATNNNNATC	3 cut(s)	354, 576, 834
BseBI	CCWGG	3 cut(s)	275, 469, 738
BseDI	CCNNGG	5 cut(s)	258, 624, 625, 824, 953
BseGI	GGATG	4 cut(s)	577, 591, 724, 1054
BseJI	GATNNNNATC	3 cut(s)	354, 576, 834
BseLI	CCNNNNNNNGG	1 cut(s)	983
BseMII	CTCAG	4 cut(s)	665, 770, 862, 1019
BseNI	ACTGG	2 cut(s)	524, 692
BseXI	GCAGC	7 cut(s)	22, 25, 55, 127, 155, 717, 936
Bsh1285I	CGRYCG	2 cut(s)	328, 409
BshFI	GGCC	4 cut(s)	185, 512, 544, 603
BsiEI	CGRYCG	2 cut(s)	328, 409
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	328, 626, 1008
BslFI	GGGAC	2 cut(s)	188, 642
BslI	CCNNNNNNNGG	1 cut(s)	983
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	188, 642
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	4 cut(s)	185, 512, 544, 603
BsoBI	CYCGRG	1 cut(s)	625
Bsp143I	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
BspACI	CCGC	3 cut(s)	637, 874, 984
BspANI	GGCC	4 cut(s)	185, 512, 544, 603
BspCNI	CTCAG	4 cut(s)	664, 769, 861, 1020
BspLI	GGNNCC	5 cut(s)	203, 204, 279, 602, 662
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	3 cut(s)	61, 323, 494
BspPI	GGATC	4 cut(s)	344, 463, 830, 852
BsrFI	RCCGGY	1 cut(s)	1007
BsrI	ACTGG	2 cut(s)	524, 692
BssAI	RCCGGY	1 cut(s)	1007
BssECI	CCNNGG	5 cut(s)	258, 624, 625, 824, 953
BssMI	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
BssNAI	GTATAC	1 cut(s)	1076
BssT1I	CCWWGG	2 cut(s)	258, 824
Bst1107I	GTATAC	1 cut(s)	1076
Bst2UI	CCWGG	3 cut(s)	275, 469, 738
Bst6I	CTCTTC	1 cut(s)	555
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	165, 501
BstDEI	CTNAG	6 cut(s)	360, 514, 651, 756, 848, 1028
BstDSI	CCRYGG	1 cut(s)	953
BstF5I	GGATG	4 cut(s)	577, 591, 724, 1054
BstH2I	RGCGCY	1 cut(s)	1037
BstHHI	GCGC	1 cut(s)	1036
BstKTI	GATC	7 cut(s)	48, 231, 352, 409, 458, 838, 847
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
BstMCI	CGRYCG	2 cut(s)	328, 409
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 125, 252, 509, 620
BstNI	CCWGG	3 cut(s)	275, 469, 738
BstSCI	CCNGG	6 cut(s)	273, 327, 467, 624, 625, 736
BstSFI	CTRYAG	2 cut(s)	141, 187
BstV1I	GCAGC	7 cut(s)	22, 25, 55, 127, 155, 717, 936
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BstZ17I	GTATAC	1 cut(s)	1076
BsuRI	GGCC	4 cut(s)	185, 512, 544, 603
BtgI	CCRYGG	1 cut(s)	953
BtsCI	GGATG	4 cut(s)	577, 591, 724, 1054
BveI	ACCTGC	3 cut(s)	61, 323, 494
Cac8I	GCNNGC	2 cut(s)	165, 501
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	1036
Cfr10I	RCCGGY	1 cut(s)	1007
Cfr13I	GGNCC	2 cut(s)	202, 601
Cfr9I	CCCGGG	1 cut(s)	625
CseI	GACGC	1 cut(s)	41
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviAII	CATG	4 cut(s)	235, 242, 679, 715
DdeI	CTNAG	6 cut(s)	360, 514, 651, 756, 848, 1028
DpnI	GATC	7 cut(s)	47, 230, 351, 408, 457, 837, 846
DpnII	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	999
Eco130I	CCWWGG	2 cut(s)	258, 824
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	141, 685, 911
Eco88I	CYCGRG	1 cut(s)	625
EcoO109I	RGGNCCY	2 cut(s)	202, 601
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	3 cut(s)	273, 467, 736
EcoT14I	CCWWGG	2 cut(s)	258, 824
ErhI	CCWWGG	2 cut(s)	258, 824
FaeI	CATG	4 cut(s)	238, 245, 682, 718
FaqI	GGGAC	2 cut(s)	188, 642
FatI	CATG	4 cut(s)	234, 241, 678, 714
FblI	GTMKAC	1 cut(s)	1075
Fnu4HI	GCNGC	7 cut(s)	36, 39, 69, 141, 144, 706, 950
FokI	GGATG	4 cut(s)	578, 584, 731, 1041
Fsp4HI	GCNGC	7 cut(s)	36, 39, 69, 141, 144, 706, 950
FspBI	CTAG	3 cut(s)	401, 419, 1071
GlaI	GCGC	1 cut(s)	1035
GluI	GCNGC	7 cut(s)	36, 39, 69, 141, 144, 706, 950
GsuI	CTGGAG	1 cut(s)	490
HaeII	RGCGCY	1 cut(s)	1037
HaeIII	GGCC	4 cut(s)	185, 512, 544, 603
HapII	CCGG	3 cut(s)	328, 626, 1008
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	1036
Hin1II	CATG	4 cut(s)	238, 245, 682, 718
Hin6I	GCGC	1 cut(s)	1034
HinP1I	GCGC	1 cut(s)	1034
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	7 cut(s)	444, 588, 754, 763, 933, 958, 1024
HpaII	CCGG	3 cut(s)	328, 626, 1008
HphI	GGTGA	2 cut(s)	42, 141
Hpy166II	GTNNAC	2 cut(s)	883, 1076
Hpy188I	TCNGA	7 cut(s)	31, 61, 582, 654, 930, 1029, 1046
Hpy188III	TCNNGA	5 cut(s)	373, 758, 800, 968, 977
Hpy8I	GTNNAC	2 cut(s)	883, 1076
HpyAV	CCTTC	2 cut(s)	168, 555
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	8 cut(s)	26, 56, 143, 167, 477, 614, 796, 1000
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 125, 252, 509, 620
HpyF3I	CTNAG	6 cut(s)	360, 514, 651, 756, 848, 1028
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	238, 245, 682, 718
HspAI	GCGC	1 cut(s)	1034
KflI	GGGWCCC	1 cut(s)	202
Kzo9I	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
LmnI	GCTCC	3 cut(s)	260, 283, 666
Lsp1109I	GCAGC	7 cut(s)	22, 25, 55, 127, 155, 717, 936
LweI	GCATC	5 cut(s)	35, 65, 187, 486, 805
MaeI	CTAG	3 cut(s)	401, 419, 1071
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	3 cut(s)	646, 800, 896
MalI	GATC	7 cut(s)	47, 230, 351, 408, 457, 837, 846
MboI	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
MboII	GAAGA	7 cut(s)	134, 143, 542, 597, 691, 914, 1061
MflI	RGATCY	1 cut(s)	844
MluCI	AATT	5 cut(s)	97, 287, 532, 617, 809
MlyI	GAGTC	3 cut(s)	453, 582, 748
MnlI	CCTC	7 cut(s)	55, 614, 676, 734, 1012, 1023, 1068
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	1013
MspA1I	CMGCKG	1 cut(s)	874
MspI	CCGG	3 cut(s)	328, 626, 1008
MspR9I	CCNGG	6 cut(s)	275, 329, 469, 626, 627, 738
Mva1269I	GAATGC	1 cut(s)	815
MvaI	CCWGG	3 cut(s)	275, 469, 738
MwoI	GCNNNNNNNGC	5 cut(s)	32, 125, 252, 509, 620
NciI	CCSGG	3 cut(s)	329, 626, 627
NdeII	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
NlaIII	CATG	4 cut(s)	238, 245, 682, 718
NlaIV	GGNNCC	5 cut(s)	203, 204, 279, 602, 662
NmuCI	GTSAC	1 cut(s)	800
PaqCI	CACCTGC	2 cut(s)	61, 494
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PctI	GAATGC	1 cut(s)	815
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	763, 933, 958, 1024
PkrI	GCNGC	7 cut(s)	37, 40, 70, 142, 145, 707, 951
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	3 cut(s)	452, 582, 748
PpsI	GAGTC	3 cut(s)	452, 582, 748
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	273, 467, 736
PspGI	CCWGG	3 cut(s)	273, 467, 736
PspN4I	GGNNCC	5 cut(s)	203, 204, 279, 602, 662
PspPI	GGNCC	2 cut(s)	202, 601
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	844
PvuI	CGATCG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	1013
SatI	GCNGC	7 cut(s)	36, 39, 69, 141, 144, 706, 950
Sau3AI	GATC	7 cut(s)	45, 228, 349, 406, 455, 835, 844
Sau96I	GGNCC	2 cut(s)	202, 601
SchI	GAGTC	3 cut(s)	453, 582, 748
ScrFI	CCNGG	6 cut(s)	275, 329, 469, 626, 627, 738
SfaNI	GCATC	5 cut(s)	35, 65, 187, 486, 805
SfcI	CTRYAG	2 cut(s)	141, 187
SinI	GGWCC	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	627
Sse9I	AATT	5 cut(s)	97, 287, 532, 617, 809
SsiI	CCGC	3 cut(s)	637, 874, 984
SspMI	CTAG	3 cut(s)	401, 419, 1071
StyD4I	CCNGG	6 cut(s)	273, 327, 467, 624, 625, 736
StyI	CCWWGG	2 cut(s)	258, 824
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	4 cut(s)	44, 393, 425, 834
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	5 cut(s)	97, 287, 532, 617, 809
TfiI	GAWTC	4 cut(s)	763, 933, 958, 1024
Tru1I	TTAA	1 cut(s)	1013
Tru9I	TTAA	1 cut(s)	1013
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	7 cut(s)	35, 38, 68, 140, 143, 705, 949
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	2 cut(s)	230, 1080
TspMI	CCCGGG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	2 cut(s)	97, 617
XmaI	CCCGGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	1075
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	3 cut(s)	401, 419, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.