Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

39641874 .. 39643810

Gene Structure 1937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGACAGGGATGATATCAAACACAGCTGTGGTGGTGATGGGTTTCTTGGGAATGCTTTACATGGCAACAACTCAGCTTCCACCTCCACAGACCTCTGCTCTGCCTGAAGATCCTCCTCCAACATCTCCAAGAATCAGGCTTGCTGATGGGAGGCATCTGGCTTACAGAGAAACTGGGGTCCCCAAGAACAACTCAAAGTTCAAGATCATCATAGTTCATGGCTTTGGAAGCTCTAAAGAAATGAGTTTCCAGGCACCCCAAGAAATGATAGATGAGTTGGGGATATATTTTCTGCTATATGACCGGGCTGGGTATGGAGAGAGTGATCCAAATCCAAAGCGTTCAGTGAAGAGTGAAGCCCTTGACATTGAAGAACTAGCTGATCAGTTACAGCTTGGATCAAAATTTTATGTTATTGGAGTGTCAATGGGATCATACTCCACCTGGAGTTGCATCAAATACATCCCACATAGGCTAGCTGGTGTGGCTTTTGTAGTCCCAGTTGTGAATTATAGGTGGCCTTCATTTCCAGACAATCTGATAAAGGATGATTACAGAAGAAAACTAGTTCAATCGGCACTCTGGTTTGCAGACTATGCCCCTGGGCTGATGCAATGGTGGGTGACTCAGAAATGGCTCCCTTCAACTTCTGTCATGGAAAGAAACCCGGTATTCTTCAACACCAGAGACATTGATGTCCTGAAAACAACCCCAGGCTTCCCAATGCTCACTAAGGATAAATTGCGGCAAAGAGGGGTTTTCAATACTCTGCATCTTGACTTTAAAGCAGCTTTCAGCCATTGGGATTTTGATCCAATGGATCTAAGTAATCCATTCCCGCAAAATCAGAGCGCTGTCCACATTTGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCAACTGCAAAGATATATTTCATCGAAACTACCCTGGATTCAGTATCATGAAGTTCCTGATGGTGGGCATTTGATTGTGCATTATGCTGGTTTATGTGAAGCCATTCTCAGAGCGCTTTTGCTTGGTGAAGAATCACTTCACTACAAACCTACTATTGCCAAAATTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

357

Amino Acids

40.52

Weight (kDa)

7.16

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	66 - 324	2.8e-09	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	69 - 325	7.2e-13	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	69 - 325	5.1e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	695
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	2 cut(s)	745, 839
AclWI	GGATC	6 cut(s)	104, 320, 406, 439, 806, 828
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	126
AfeI	AGCGCT	2 cut(s)	853, 1011
AfiI	CCNNNNNNNGG	1 cut(s)	959
AgsI	TTSAA	7 cut(s)	202, 371, 572, 645, 679, 763, 899
AhlI	ACTAGT	1 cut(s)	565
AjnI	CCWGG	5 cut(s)	249, 443, 601, 712, 929
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	7 cut(s)	26, 76, 231, 380, 394, 479, 791
AluI	AGCT	7 cut(s)	26, 76, 231, 380, 394, 479, 791
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	6 cut(s)	104, 320, 406, 439, 806, 828
Aor51HI	AGCGCT	2 cut(s)	853, 1011
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	2 cut(s)	999, 1032
AspLEI	GCGC	2 cut(s)	854, 1012
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	305, 668
AsuHPI	GGTGA	3 cut(s)	46, 634, 1034
AsuNHI	GCTAGC	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	3 cut(s)	31, 140, 950
BciT130I	CCWGG	5 cut(s)	251, 445, 603, 714, 931
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	2 cut(s)	305, 668
BcoDI	GTCTC	1 cut(s)	681
BcuI	ACTAGT	1 cut(s)	565
BfaI	CTAG	3 cut(s)	377, 476, 566
BfoI	RGCGCY	2 cut(s)	855, 1013
BisI	GCNGC	2 cut(s)	746, 789
BlsI	GCNGC	2 cut(s)	747, 790
Bme1390I	CCNGG	7 cut(s)	251, 305, 445, 603, 668, 714, 931
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	179, 180, 255, 638
BmrFI	CCNGG	7 cut(s)	251, 305, 445, 603, 668, 714, 931
BmrI	ACTGGG	2 cut(s)	183, 494
BmsI	GCATC	4 cut(s)	163, 462, 600, 781
BmtI	GCTAGC	1 cut(s)	479
BmuI	ACTGGG	2 cut(s)	183, 494
BpmI	CTGGAG	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	305, 668
BsaBI	GATNNNNATC	2 cut(s)	330, 810
BsaJI	CCNNGG	4 cut(s)	601, 602, 712, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	959
Bse1I	ACTGG	2 cut(s)	178, 500
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	2 cut(s)	330, 810
BseBI	CCWGG	5 cut(s)	251, 445, 603, 714, 931
BseDI	CCNNGG	4 cut(s)	601, 602, 712, 929
BseGI	GGATG	3 cut(s)	15, 462, 553
BseJI	GATNNNNATC	2 cut(s)	330, 810
BseLI	CCNNNNNNNGG	1 cut(s)	959
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	3 cut(s)	86, 641, 1018
BseNI	ACTGG	2 cut(s)	178, 500
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	800
BseYI	CCCAGC	1 cut(s)	308
BshFI	GGCC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	304, 668
BslFI	GGGAC	2 cut(s)	164, 482
BslI	CCNNNNNNNGG	1 cut(s)	959
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	164, 482
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	520
Bsp143I	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
BspACI	CCGC	2 cut(s)	745, 839
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	3 cut(s)	85, 640, 1017
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	4 cut(s)	179, 180, 255, 638
BspOI	GCTAGC	1 cut(s)	479
BspPI	GGATC	6 cut(s)	104, 320, 406, 439, 806, 828
BspT107I	GGYRCC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	178, 500
BssECI	CCNNGG	4 cut(s)	601, 602, 712, 929
BssMI	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
Bst2UI	CCWGG	5 cut(s)	251, 445, 603, 714, 931
Bst6I	CTCTTC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	141, 477
BstDEI	CTNAG	5 cut(s)	72, 627, 732, 824, 1004
BstF5I	GGATG	3 cut(s)	15, 462, 553
BstH2I	RGCGCY	2 cut(s)	855, 1013
BstHHI	GCGC	2 cut(s)	854, 1012
BstKTI	GATC	8 cut(s)	112, 207, 328, 385, 401, 434, 814, 823
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 485, 596
BstNI	CCWGG	5 cut(s)	251, 445, 603, 714, 931
BstSCI	CCNGG	7 cut(s)	249, 303, 443, 601, 666, 712, 929
BstV1I	GCAGC	1 cut(s)	800
BstX2I	RGATCY	2 cut(s)	109, 820
BstYI	RGATCY	2 cut(s)	109, 820
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	3 cut(s)	15, 462, 553
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	141, 477
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	2 cut(s)	854, 1012
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	4 cut(s)	61, 218, 655, 944
DdeI	CTNAG	5 cut(s)	72, 627, 732, 824, 1004
DpnI	GATC	8 cut(s)	111, 206, 327, 384, 400, 433, 813, 822
DpnII	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
DraI	TTTAAA	1 cut(s)	784
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	178
Eco47III	AGCGCT	2 cut(s)	853, 1011
Eco57I	CTGAAG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	5 cut(s)	249, 443, 601, 712, 929
EcoRV	GATATC	1 cut(s)	15
FaeI	CATG	4 cut(s)	64, 221, 658, 947
FalI	AAGNNNNNCTT	2 cut(s)	1017, 1049
FaqI	GGGAC	2 cut(s)	164, 482
FatI	CATG	4 cut(s)	60, 217, 654, 943
FauI	CCCGC	1 cut(s)	846
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	746, 789
FokI	GGATG	3 cut(s)	22, 449, 560
Fsp4HI	GCNGC	2 cut(s)	746, 789
FspBI	CTAG	3 cut(s)	377, 476, 566
GlaI	GCGC	2 cut(s)	853, 1011
GluI	GCNGC	2 cut(s)	746, 789
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	466
HaeII	RGCGCY	2 cut(s)	855, 1013
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	2 cut(s)	304, 668
HhaI	GCGC	2 cut(s)	854, 1012
Hin1II	CATG	4 cut(s)	64, 221, 658, 947
Hin6I	GCGC	2 cut(s)	852, 1010
HinP1I	GCGC	2 cut(s)	852, 1010
HinfI	GANTC	4 cut(s)	132, 625, 934, 1028
HpaII	CCGG	2 cut(s)	304, 668
HphI	GGTGA	3 cut(s)	46, 634, 1034
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188I	TCNGA	4 cut(s)	540, 630, 849, 1007
Hpy188III	TCNNGA	6 cut(s)	202, 530, 700, 776, 944, 953
Hpy8I	GTNNAC	1 cut(s)	859
HpyAV	CCTTC	2 cut(s)	531, 651
HpyCH4V	TGCA	6 cut(s)	453, 590, 613, 772, 904, 976
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 485, 596
HpyF3I	CTNAG	5 cut(s)	72, 627, 732, 824, 1004
Hsp92II	CATG	4 cut(s)	64, 221, 658, 947
HspAI	GCGC	2 cut(s)	852, 1010
KflI	GGGWCCC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
LmnI	GCTCC	1 cut(s)	642
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	4 cut(s)	163, 462, 600, 781
MaeI	CTAG	3 cut(s)	377, 476, 566
MaeIII	GTNAC	2 cut(s)	387, 622
MalI	GATC	8 cut(s)	111, 206, 327, 384, 400, 433, 813, 822
MboI	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
MboII	GAAGA	7 cut(s)	119, 361, 383, 570, 667, 890, 1037
MflI	RGATCY	2 cut(s)	109, 820
MluCI	AATT	4 cut(s)	404, 508, 740, 1059
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	93, 103, 123, 126, 144, 746
MroXI	GAANNNNTTC	2 cut(s)	999, 1032
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	304, 668
MspR9I	CCNGG	7 cut(s)	251, 305, 445, 603, 668, 714, 931
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	5 cut(s)	251, 445, 603, 714, 931
MwoI	GCNNNNNNNGC	3 cut(s)	228, 485, 596
NciI	CCSGG	2 cut(s)	305, 668
NdeII	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	64, 221, 658, 947
NlaIV	GGNNCC	4 cut(s)	179, 180, 255, 638
NmuCI	GTSAC	1 cut(s)	622
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	943
PasI	CCCWGGG	1 cut(s)	602
PctI	GAATGC	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	999, 1032
PfeI	GAWTC	3 cut(s)	132, 934, 1028
PkrI	GCNGC	2 cut(s)	747, 790
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	5 cut(s)	249, 443, 601, 712, 929
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	5 cut(s)	249, 443, 601, 712, 929
PspN4I	GGNNCC	4 cut(s)	179, 180, 255, 638
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	109, 820
PvuII	CAGCTG	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	2 cut(s)	746, 789
Sau3AI	GATC	8 cut(s)	109, 204, 325, 382, 398, 431, 811, 820
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	7 cut(s)	251, 305, 445, 603, 668, 714, 931
SfaNI	GCATC	4 cut(s)	163, 462, 600, 781
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	565
Sse9I	AATT	4 cut(s)	404, 508, 740, 1059
SsiI	CCGC	2 cut(s)	745, 839
SspMI	CTAG	3 cut(s)	377, 476, 566
StyD4I	CCNGG	7 cut(s)	249, 303, 443, 601, 666, 712, 929
TaqI	TCGA	1 cut(s)	920
TasI	AATT	4 cut(s)	404, 508, 740, 1059
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	3 cut(s)	132, 934, 1028
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	5 cut(s)	206, 513, 891, 906, 960
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	404
XmnI	GAANNNNTTC	2 cut(s)	999, 1032
XspI	CTAG	3 cut(s)	377, 476, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.