Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

21902574 .. 21902963

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTATCCATACCAGTGGCTCCAAAAACTCAGCTTTACCCATTCTCGCTGGGACCCTTTGCTGCTCGATCAGTCACTTCATCATTCACAAGTGCCCAATTTGTTCGATAATCGCACAATGCCTTCTGTCTTAGCCTCCCTGGGTGCTAAAGCTCAAGTCTTTGACAACGAAATCATGGTTAACATTGATGGGATTACATCGGTTGAGCCTATTTCTGATGAGATTCGGAAGATTCGAGGTGGGTTTTTCGTCCTCGATGACGCTGTGGTTGCATCACCCGGTGGCTGTGATATTGGGCTTCCAGACTGGTGGACCTTTACATTTGGGGTCTTCAAGCTCTTGGTGCTGTTGTGGAGTCGAAGTAAGGGTCTTGAAAACTCTCTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

129

Amino Acids

14.58

Weight (kDa)

5.16

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	334, 374
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	33, 152, 337
AluI	AGCT	3 cut(s)	33, 152, 337
ApeKI	GCWGC	1 cut(s)	61
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
AspS9I	GGNCC	2 cut(s)	52, 312
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	52, 312
BaeGI	GKGCMC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	140, 279
Bme18I	GGWCC	2 cut(s)	52, 312
BmgT120I	GGNCC	2 cut(s)	52, 312
BmiI	GGNNCC	3 cut(s)	20, 53, 54
BmrFI	CCNGG	2 cut(s)	140, 279
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	138, 139
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse1I	ACTGG	2 cut(s)	13, 311
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	138, 139
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	2 cut(s)	13, 311
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	20, 53, 54
BsrI	ACTGG	2 cut(s)	13, 311
BssECI	CCNNGG	2 cut(s)	138, 139
BssMI	GATC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	29, 130
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 343
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	138, 277
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	322
BstXI	CCANNNNNNTGG	2 cut(s)	15, 309
BsuI	GTATCC	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	52, 312
CseI	GACGC	1 cut(s)	269
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	19, 33, 134, 152, 208, 285, 298, 337
CviKI_1	RGCY	8 cut(s)	19, 33, 134, 152, 208, 285, 298, 337
DdeI	CTNAG	2 cut(s)	29, 130
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	52, 312
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	10, 176
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	52
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	223, 232, 355
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	181, 312
Hpy188I	TCNGA	2 cut(s)	217, 228
Hpy188III	TCNNGA	2 cut(s)	302, 371
Hpy8I	GTNNAC	2 cut(s)	181, 312
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 343
HpyF3I	CTNAG	2 cut(s)	29, 130
Hsp92II	CATG	1 cut(s)	178
KflI	GGGWCCC	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	7 cut(s)	26, 34, 125, 152, 292, 292, 315
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	241, 322
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	145, 230, 263
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	13
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	140, 279
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	269, 343
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	20, 53, 54
NmuCI	GTSAC	1 cut(s)	72
PasI	CCCWGGG	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	223, 232
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	20, 53, 54
PspPI	GGNCC	2 cut(s)	52, 312
PspPPI	RGGWCCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	2 cut(s)	52, 312
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	140, 279
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	35, 154, 241, 317, 339
SfaNI	GCATC	1 cut(s)	281
SinI	GGWCC	2 cut(s)	52, 312
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	138, 277
TaqI	TCGA	5 cut(s)	66, 105, 235, 255, 358
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	223, 232
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	52, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.