Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005123

Physical Location & Seq

Genomic Coordinates Forward (+)

37444785 .. 37447368

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG332100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGATCATACTCCACCTGGAGTTGCATCAAATACATCCCACATAGGTTAGCTGGTGTGGCTTTTGTAGTCCCAGTTGTGAATTATAGGTGGCCTTCATTTCCAGACAATCTGATAAAGGATGATTACAGAAGAAAACTAGTTCAATCGGCACTCTGGTTTGCAGACTATGCCCCTGGGCTGATGCAATGGTGGGTGACTCAGAAATGGCTCCCTTCAACTTCTGTCATGGAAAGAAACCCGGTGTTCTTCAACACCAGAGACATTGATGTCCTGAAAACAACCCCAGGCTTCCCAATGCTCACTAAGGATAAATTGCGGCAAAGAGGGGTTTTCAATACTCTGCATCTTGACTTTAAAGCAGCTTTCAGCCATTGGGATTTTGATCCAATGGATCTAAGTAATCCATTCCCGCAAAATCAGAGCGCTGTCCACATTTGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCAACTGCAAAGATATATTTCATCGAAACTACCCTGGATTCAGTATCATGAAGTTCCTGATGGTGGGCATTTGATTGTGCATTATGCTGGTTTATGTGAAGCCATTCTCAGGGCACTTTTGCTTGGTGAAGAATCACTTCACTACAAACCTACTATTGCCAAAATTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

214

Amino Acids

24.91

Weight (kDa)

8.79

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44510 AT3G44510 AT3G44510 AT3G44510 AT3G44510
fragaria_vesca	FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760 FvH4_3g24760
malus_domestica	MD03G1143100.v1.1 MD11G1163900.v1.1
prunus_persica	Prupe.6G128600_v2.0.a1 Prupe.6G128600_v2.0.a1
pyrus_communis	pycom03g09800 pycom11g13540
rosa_chinensis	RchiOBHm_Chr5g0044341
rosa_laevigata	RLG00000034267
rosa_multiflora	Rmu_sc0004741.1_g000020 Rmu_sc0015666.1_g000011
rosa_roxburghii	Rroxscaffold_1G00036620
rosa_rugosa	Rorug05G0213400 Rorug05G0213500 Rorug05G0213600
rosa_samantha	Rh5AG297700 Rh5BG305100 Rh5CG332100 Rh5DG314300
rosa_wichuraiana	Rw5G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AciI	CCGC	2 cut(s)	319, 413
AclWI	GGATC	3 cut(s)	13, 380, 402
AfeI	AGCGCT	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	533, 579
AgsI	TTSAA	5 cut(s)	146, 219, 253, 337, 473
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	4 cut(s)	17, 175, 286, 503
AluBI	AGCT	2 cut(s)	53, 365
AluI	AGCT	2 cut(s)	53, 365
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	13, 380, 402
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	362
Asp700I	GAANNNNTTC	2 cut(s)	573, 606
AspLEI	GCGC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	208, 608
BaeGI	GKGCMC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	4 cut(s)	19, 177, 288, 505
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	255
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	2 cut(s)	320, 363
BlsI	GCNGC	2 cut(s)	321, 364
Bme1390I	CCNGG	5 cut(s)	19, 177, 242, 288, 505
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	5 cut(s)	19, 177, 242, 288, 505
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	3 cut(s)	36, 174, 355
BmuI	ACTGGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	175, 176, 286, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 579
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	4 cut(s)	19, 177, 288, 505
BseDI	CCNNGG	4 cut(s)	175, 176, 286, 503
BseGI	GGATG	2 cut(s)	36, 127
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	533, 579
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	215, 592
BseNI	ACTGG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	533, 579
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	5, 385, 394
BspACI	CCGC	2 cut(s)	319, 413
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	214, 591
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	3 cut(s)	13, 380, 402
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	175, 176, 286, 503
BssMI	GATC	3 cut(s)	5, 385, 394
Bst2UI	CCWGG	4 cut(s)	19, 177, 288, 505
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstDEI	CTNAG	4 cut(s)	201, 306, 398, 578
BstF5I	GGATG	2 cut(s)	36, 127
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	3 cut(s)	8, 388, 397
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	5, 385, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 170
BstNI	CCWGG	4 cut(s)	19, 177, 288, 505
BstSCI	CCNGG	5 cut(s)	17, 175, 240, 286, 503
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	36, 127
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	428
CviAII	CATG	2 cut(s)	229, 518
CviJI	RGCY	9 cut(s)	53, 62, 94, 181, 211, 291, 365, 372, 572
CviKI_1	RGCY	9 cut(s)	53, 62, 94, 181, 211, 291, 365, 372, 572
DdeI	CTNAG	4 cut(s)	201, 306, 398, 578
DpnI	GATC	3 cut(s)	7, 387, 396
DpnII	GATC	3 cut(s)	5, 385, 394
DraI	TTTAAA	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eco47III	AGCGCT	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	17, 175, 286, 503
FaeI	CATG	2 cut(s)	232, 521
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	228, 517
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	320, 363
FokI	GGATG	2 cut(s)	23, 134
Fsp4HI	GCNGC	2 cut(s)	320, 363
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	320, 363
GsuI	CTGGAG	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	232, 521
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	199, 508, 602
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	208, 608
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	114, 204, 423
Hpy188III	TCNNGA	5 cut(s)	104, 274, 350, 518, 527
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	105, 225
HpyCH4V	TGCA	6 cut(s)	27, 164, 187, 346, 478, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 170
HpyF3I	CTNAG	4 cut(s)	201, 306, 398, 578
Hsp92II	CATG	2 cut(s)	232, 521
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	5, 385, 394
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	3 cut(s)	36, 174, 355
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	3 cut(s)	7, 387, 396
MboI	GATC	3 cut(s)	5, 385, 394
MboII	GAAGA	4 cut(s)	144, 241, 464, 611
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	3 cut(s)	82, 314, 633
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	1 cut(s)	320
MroXI	GAANNNNTTC	2 cut(s)	573, 606
MseI	TTAA	1 cut(s)	357
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	5 cut(s)	19, 177, 242, 288, 505
MvaI	CCWGG	4 cut(s)	19, 177, 288, 505
MwoI	GCNNNNNNNGC	2 cut(s)	59, 170
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	5, 385, 394
NlaIII	CATG	2 cut(s)	232, 521
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	196
PagI	TCATGA	1 cut(s)	517
PasI	CCCWGGG	1 cut(s)	176
PdmI	GAANNNNTTC	2 cut(s)	573, 606
PfeI	GAWTC	2 cut(s)	508, 602
PkrI	GCNGC	2 cut(s)	321, 364
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	4 cut(s)	17, 175, 286, 503
PspGI	CCWGG	4 cut(s)	17, 175, 286, 503
PspN4I	GGNNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	320, 363
Sau3AI	GATC	3 cut(s)	5, 385, 394
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	5 cut(s)	19, 177, 242, 288, 505
SduI	GDGCHC	1 cut(s)	586
SetI	ASST	8 cut(s)	20, 50, 55, 92, 367, 448, 462, 622
SfaNI	GCATC	3 cut(s)	36, 174, 355
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	3 cut(s)	82, 314, 633
SsiI	CCGC	2 cut(s)	319, 413
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	5 cut(s)	17, 175, 240, 286, 503
TaqI	TCGA	1 cut(s)	494
TasI	AATT	3 cut(s)	82, 314, 633
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	508, 602
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	87, 465, 480, 534
XmnI	GAANNNNTTC	2 cut(s)	573, 606
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.