Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010040

Physical Location & Seq

Genomic Coordinates Forward (+)

20141058 .. 20142711

Gene Structure 1654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27040.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTGTATAAATCGAACCATTCAAAGCTCCCATTTTCCCTCAGACATTCAATATTACGAGAGAGTGAGAATTGAAGTCACTTGCATACTAATTACTCAACATATGACGACGGAGGGAAAGCCATTTGCAGCAGCTAATCGGGTTTTCGAAGATATTGAACTGCCATCATCGGCAGAGTGGGTTCAAGAGGAAGGATATGACACTCTCATCGTCAATCTGCAAGGATATAAGAAGGAGAACCTGAGGATCCAGGTAACCTCAACTCGGAACATACGGGTGCTCGGTGAACGCCCAGTTCGTCCAGAAAACAATATATGGCAGCGCTTCCGCAAGGAATTTCCAGTTCCATCAAATTGTGATGTTAATGAAACCTCCGCCAGGTTTGACAACGGCTTCCTTTACGTCAAGATTCCGAAAACAATAGCTCCGGTTATCGAAACAGCAGCAGCAAATAAGGATCAGAAACCACAAAAGCCAGCCACCGGAACAGCACCACCACCGCCCACAGAATCAAATCCAAAGCCTCGGAAGCCCACAAGCAGCACTACTGCTTATGTACCACACACTGCAGCAGCTTCAACTCAAAAGAATCTTAACAATAATGCGCAAAGGTGGACCAATCCTGCGGCTCAAGAACAAATACCGCCTAATTCGAGTGCCATTAAGGAGAACAAAACCGATGGATCATCATCAAAAGTTAATAGTGGATCACAAGCAAAGTATGCTAACAATGCTGCAACAGCTGAACCGAAGGCACCCGATCAGAAGGAGAAAGTAGTAGCAGCTGTTACTACTGATCAACCAAGAAAGGTGAATAAGATAAGTACTACTACTTATGAGGAGGGAGTAGCTGAGGGTCGCACTAATGGTGCTTCTAAGAAGTTCACATCAATGGAGAAAGAAAAGAGGGATGTGTTTTCAGCAAATGCTCAAATTGTGGAAGAAAGATCATCACCTAATACTGAAGATGTTGATCGCAGTAAAAGGGTTGATGAGGAAAATGCAAAAACTGAAGAGTATTGTAGTAGGACACAAGGCGGGCGTGGTTATTACAGGCAGGTTGTTGATGGGTTAATCATGGAGCTCAAGGAGCCAAGGAAGATGGCTAGGAACATGAGACCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

376

Amino Acids

41.98

Weight (kDa)

9.19

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	67 - 143	2.9e-09	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27140 AT5G20970
fragaria_vesca	FvH4_3g27040 FvH4_3g27040
malus_domestica	MD03G1162700.v1.1 MD11G1178700.v1.1
prunus_persica	Prupe.6G151500_v2.0.a1
pyrus_communis	pycom03g11540 pycom11g15410
rosa_chinensis	RchiOBHm_Chr5g0049611
rosa_laevigata	RLG00000034627
rosa_multiflora	Rmu_co8291603.1_g000001 Rmu_sc0031431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032090
rosa_rugosa	Rorug05G0249200
rosa_samantha	Rh2BG376800 Rh5AG325600 Rh5BG337000 Rh5CG361700 Rh5DG349200
rosa_wichuraiana	Rw5G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	1048
AccB1I	GGYRCC	1 cut(s)	754
AciI	CCGC	6 cut(s)	328, 375, 500, 626, 644, 1038
AclWI	GGATC	5 cut(s)	241, 254, 465, 691, 715
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	984, 1032
AfaI	GTAC	2 cut(s)	558, 826
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	264, 378, 482
AgsI	TTSAA	6 cut(s)	23, 50, 74, 158, 185, 579
AjnI	CCWGG	2 cut(s)	249, 377
AluBI	AGCT	8 cut(s)	27, 134, 425, 575, 743, 785, 851, 1084
AluI	AGCT	8 cut(s)	27, 134, 425, 575, 743, 785, 851, 1084
Alw21I	GWGCWC	2 cut(s)	282, 1086
Alw26I	GTCTC	1 cut(s)	1111
AlwI	GGATC	5 cut(s)	241, 254, 465, 691, 715
Aor51HI	AGCGCT	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	324, 607
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	296, 823, 945
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	615
AxyI	CCTNAGG	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	1086
Bbv12I	GWGCWC	2 cut(s)	282, 1086
BbvCI	CCTCAGC	1 cut(s)	852
BccI	CCATC	5 cut(s)	172, 355, 674, 1061, 1096
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	251, 379
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	1111
BfaI	CTAG	1 cut(s)	1107
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	1048
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	2 cut(s)	251, 379
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	3 cut(s)	248, 756, 1092
BmrFI	CCNGG	2 cut(s)	251, 379
BmrI	ACTGGG	1 cut(s)	287
BmuI	ACTGGG	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	615, 1070
BsaBI	GATNNNNATC	2 cut(s)	688, 972
BsaI	GGTCTC	1 cut(s)	1111
BsaJI	CCNNGG	2 cut(s)	524, 1094
BsaWI	WCCGGW	2 cut(s)	427, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 378, 482
Bse1I	ACTGG	2 cut(s)	293, 341
Bse21I	CCTNAGG	1 cut(s)	242
Bse8I	GATNNNNATC	2 cut(s)	688, 972
BseBI	CCWGG	2 cut(s)	251, 379
BseDI	CCNNGG	2 cut(s)	524, 1094
BseGI	GGATG	1 cut(s)	916
BseJI	GATNNNNATC	2 cut(s)	688, 972
BseLI	CCNNNNNNNGG	3 cut(s)	264, 378, 482
BseMII	CTCAG	3 cut(s)	54, 233, 843
BseNI	ACTGG	2 cut(s)	293, 341
BseRI	GAGGAG	1 cut(s)	854
BshNI	GGYRCC	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	282, 1086
BsiSI	CCGG	2 cut(s)	428, 483
BslI	CCNNNNNNNGG	3 cut(s)	264, 378, 482
BsmAI	GTCTC	1 cut(s)	1111
Bso31I	GGTCTC	1 cut(s)	1111
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	282, 1086
Bsp143I	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
BspACI	CCGC	6 cut(s)	328, 375, 500, 626, 644, 1038
BspCNI	CTCAG	3 cut(s)	53, 234, 844
BspLI	GGNNCC	3 cut(s)	248, 756, 1092
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	5 cut(s)	241, 254, 465, 691, 715
BspT104I	TTCGAA	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	1111
BsrI	ACTGG	2 cut(s)	293, 341
BssECI	CCNNGG	2 cut(s)	524, 1094
BssMI	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
BssT1I	CCWWGG	1 cut(s)	1094
Bst2UI	CCWGG	2 cut(s)	251, 379
Bst6I	CTCTTC	1 cut(s)	1008
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	477, 1040
BstDEI	CTNAG	4 cut(s)	40, 242, 852, 876
BstEII	GGTNACC	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	916
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	324, 607
BstKTI	GATC	8 cut(s)	249, 460, 686, 710, 763, 799, 950, 976
BstMAI	GTCTC	1 cut(s)	1111
BstMBI	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	529, 722, 731, 740, 1090
BstNI	CCWGG	2 cut(s)	251, 379
BstPI	GGTNACC	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	249, 377
BstSFI	CTRYAG	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	916
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	2 cut(s)	477, 1040
CfoI	GCGC	2 cut(s)	324, 607
Cfr13I	GGNCC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	557, 825
CviAII	CATG	2 cut(s)	1078, 1114
CviQI	GTAC	2 cut(s)	557, 825
DdeI	CTNAG	4 cut(s)	40, 242, 852, 876
DpnI	GATC	8 cut(s)	248, 459, 685, 709, 762, 798, 949, 975
DpnII	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
Eam1104I	CTCTTC	1 cut(s)	1008
EarI	CTCTTC	1 cut(s)	1008
EciI	GGCGGA	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	1084
Eco130I	CCWWGG	1 cut(s)	1094
Eco24I	GRGCYC	1 cut(s)	1086
Eco31I	GGTCTC	1 cut(s)	1111
Eco47I	GGWCC	1 cut(s)	615
Eco47III	AGCGCT	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	1084
Eco57I	CTGAAG	2 cut(s)	984, 1032
Eco81I	CCTNAGG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	249, 377
EcoT14I	CCWWGG	1 cut(s)	1094
EcoT38I	GRGCYC	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	1094
FaeI	CATG	2 cut(s)	1081, 1117
FatI	CATG	2 cut(s)	1077, 1113
FauI	CCCGC	1 cut(s)	1031
FauNDI	CATATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	796
FokI	GGATG	1 cut(s)	923
FriOI	GRGCYC	1 cut(s)	1086
FspBI	CTAG	1 cut(s)	1107
FspI	TGCGCA	1 cut(s)	606
GlaI	GCGC	2 cut(s)	323, 606
HaeII	RGCGCY	1 cut(s)	325
HapII	CCGG	2 cut(s)	428, 483
HhaI	GCGC	2 cut(s)	324, 607
Hin1II	CATG	2 cut(s)	1081, 1117
Hin6I	GCGC	2 cut(s)	322, 605
HinP1I	GCGC	2 cut(s)	322, 605
HinfI	GANTC	3 cut(s)	409, 509, 589
HpaII	CCGG	2 cut(s)	428, 483
HphI	GGTGA	3 cut(s)	296, 823, 945
Hpy166II	GTNNAC	3 cut(s)	287, 615, 885
Hpy188I	TCNGA	6 cut(s)	43, 267, 414, 462, 528, 765
Hpy188III	TCNNGA	4 cut(s)	185, 302, 406, 632
Hpy8I	GTNNAC	3 cut(s)	287, 615, 885
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	4 cut(s)	185, 226, 745, 760
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	6 cut(s)	84, 128, 220, 569, 737, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	529, 722, 731, 740, 1090
HpyF3I	CTNAG	4 cut(s)	40, 242, 852, 876
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	1081, 1117
HspAI	GCGC	2 cut(s)	322, 605
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
LmnI	GCTCC	4 cut(s)	32, 430, 1081, 1090
MaeI	CTAG	1 cut(s)	1107
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	76, 253, 787
MalI	GATC	8 cut(s)	248, 459, 685, 709, 762, 798, 949, 975
MboI	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
MboII	GAAGA	5 cut(s)	161, 953, 977, 1025, 1111
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	282, 1086
MluCI	AATT	6 cut(s)	69, 90, 335, 352, 649, 933
MseI	TTAA	5 cut(s)	363, 594, 663, 699, 1073
MslI	CAYNNNNRTG	2 cut(s)	275, 890
MspA1I	CMGCKG	2 cut(s)	743, 785
MspI	CCGG	2 cut(s)	428, 483
MspR9I	CCNGG	2 cut(s)	251, 379
MvaI	CCWGG	2 cut(s)	251, 379
MwoI	GCNNNNNNNGC	5 cut(s)	529, 722, 731, 740, 1090
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
NlaIII	CATG	2 cut(s)	1081, 1117
NlaIV	GGNNCC	3 cut(s)	248, 756, 1092
NmuCI	GTSAC	1 cut(s)	76
NsbI	TGCGCA	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	409, 509, 589
Psp124BI	GAGCTC	1 cut(s)	1086
Psp6I	CCWGG	2 cut(s)	249, 377
PspEI	GGTNACC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	249, 377
PspN4I	GGNNCC	3 cut(s)	248, 756, 1092
PspPI	GGNCC	1 cut(s)	615
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	2 cut(s)	743, 785
RsaI	GTAC	2 cut(s)	558, 826
RsaNI	GTAC	2 cut(s)	557, 825
RseI	CAYNNNNRTG	2 cut(s)	275, 890
SacI	GAGCTC	1 cut(s)	1086
SaqAI	TTAA	5 cut(s)	363, 594, 663, 699, 1073
Sau3AI	GATC	8 cut(s)	246, 457, 683, 707, 760, 796, 947, 973
Sau96I	GGNCC	1 cut(s)	615
ScaI	AGTACT	1 cut(s)	826
ScrFI	CCNGG	2 cut(s)	251, 379
SduI	GDGCHC	2 cut(s)	282, 1086
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	615
SmiMI	CAYNNNNRTG	2 cut(s)	275, 890
SmlI	CTYRAG	2 cut(s)	630, 1085
SmoI	CTYRAG	2 cut(s)	630, 1085
Sse9I	AATT	6 cut(s)	69, 90, 335, 352, 649, 933
SsiI	CCGC	6 cut(s)	328, 375, 500, 626, 644, 1038
SspI	AATATT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	1107
SstI	GAGCTC	1 cut(s)	1086
StyD4I	CCNGG	2 cut(s)	249, 377
StyI	CCWWGG	1 cut(s)	1094
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	4 cut(s)	13, 147, 435, 653
TasI	AATT	6 cut(s)	69, 90, 335, 352, 649, 933
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	3 cut(s)	409, 509, 589
Tru1I	TTAA	5 cut(s)	363, 594, 663, 699, 1073
Tru9I	TTAA	5 cut(s)	363, 594, 663, 699, 1073
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	335
XspI	CTAG	1 cut(s)	1107
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.