Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010040

Physical Location & Seq

Genomic Coordinates Forward (+)

13141725 .. 13143825

Gene Structure 2101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G151500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGGGAAAGCCATTTGCTGCCAATACCAATCGTGTTTTCCAAGACATTGAGCCATTAGAAGAATGGGTACGAGAGCAAGCATCCGACGCTTTCCTCGTCCATCTGTCGGGATATAAAAAGGAGAATCTGAAGATCCAAGTAACATCAGCTCGATACGTAAGGGTGCTTGGTGAACGCCCACTTGGTGACAACAAATGGGAGCGCTTCCGCAAGGAATTCCCAATTCCCTCAAACTGTGATCCCAATGACATTTCTGCCAAATTTGAGAACAGCGTTCTTACTGTCAAGCTCCCCAAAATGATAGCTCCAGCAGTTGATACAAAAGTATCAAGAACCCCCACCACAGAAGCCCCAAAGCCACCCACCCAAGAAGCTCCTAAGCCACCCGCCAAGGAAGCTCCTAAGCCACCCGCCACGGAAGCTCCTAAGCCACCCACCACGGAAGCTACAAAGCTTCCTAAACCCATGAGCACCGGTGGGCCGCAGCCTCAAAAGACTGGTGCTAATAACCAAGAGCAGATCAAGAAAAGCAACGAAGCAACTTCACAGGGGAAAAATAGTAATTACGCGCCTCCGCAGACAACGGAAAAGGAACCAAGTAGGGTGAGTAAGAGTAGCAACCAAGTGGAAGCTGAGGCTAGCAATGCTGCTCAGAAAACAATGCGCAAGGACAAGAGTGGTGATGGGTTGGACAAGATTGCTGCTAAAAGCACCGAAAAACTTGAGGAAGATCGCGGGAAAAAGGTTGAGGATTCGACAAAGGAGGAGCTTAGAAGAGCAATATTTGGGCATCCTGAGGACAATGCTGGTGTTGAGAAGTGCTCTTTTAGCTGTAACTATAAGCAGGTGGTGTATGGGCTGGTTATGGAGATGAAACAGCAGCCAAGGAAAATGGTGAAATTGGGTTTAGCATTTTTATTTGTTCTGGTGCTTTGGTTGTATGTCAAGCATACAATCAAATCAATTCAGGAAATTAAACGCCAAGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

332

Amino Acids

36.97

Weight (kDa)

9.32

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27140 AT5G20970
fragaria_vesca	FvH4_3g27040 FvH4_3g27040
malus_domestica	MD03G1162700.v1.1 MD11G1178700.v1.1
prunus_persica	Prupe.6G151500_v2.0.a1
pyrus_communis	pycom03g11540 pycom11g15410
rosa_chinensis	RchiOBHm_Chr5g0049611
rosa_laevigata	RLG00000034627
rosa_multiflora	Rmu_co8291603.1_g000001 Rmu_sc0031431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032090
rosa_rugosa	Rorug05G0249200
rosa_samantha	Rh2BG376800 Rh5AG325600 Rh5BG337000 Rh5CG361700 Rh5DG349200
rosa_wichuraiana	Rw5G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	838
Acc16I	TGCGCA	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	838
AccII	CGCG	2 cut(s)	572, 738
AciI	CCGC	6 cut(s)	211, 390, 414, 485, 578, 738
AclWI	GGATC	2 cut(s)	130, 236
AcsI	RAATTY	2 cut(s)	218, 263
AcuI	CTGAAG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	72
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgeI	ACCGGT	1 cut(s)	476
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 168, 200
Alw21I	GWGCWC	2 cut(s)	476, 827
AlwI	GGATC	2 cut(s)	130, 236
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	5 cut(s)	20, 487, 650, 704, 883
ApoI	RAATTY	2 cut(s)	218, 263
AsiGI	ACCGGT	1 cut(s)	476
AspLEI	GCGC	3 cut(s)	207, 574, 669
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	5 cut(s)	185, 200, 619, 695, 910
AsuNHI	GCTAGC	1 cut(s)	641
AxyI	CCTNAGG	1 cut(s)	798
BaeI	ACNNNNGTAYC	4 cut(s)	312, 312, 345, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
Bbv12I	GWGCWC	2 cut(s)	476, 827
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	5 cut(s)	7, 499, 637, 691, 895
BccI	CCATC	2 cut(s)	111, 680
BfaI	CTAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	838
BisI	GCNGC	6 cut(s)	21, 485, 488, 651, 705, 884
BlsI	GCNGC	6 cut(s)	22, 486, 489, 652, 706, 885
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	597
BmsI	GCATC	2 cut(s)	92, 802
BmtI	GCTAGC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	4 cut(s)	381, 405, 429, 636
BpuEI	CTTGAG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	393, 417, 441, 887
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	505
Bse21I	CCTNAGG	1 cut(s)	798
Bse3DI	GCAATG	1 cut(s)	652
BseDI	CCNNGG	4 cut(s)	393, 417, 441, 887
BseGI	GGATG	2 cut(s)	83, 793
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	3 cut(s)	627, 668, 789
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	5 cut(s)	7, 499, 637, 691, 895
Bsh1236I	CGCG	2 cut(s)	572, 738
BshFI	GGCC	1 cut(s)	484
BshTI	ACCGGT	1 cut(s)	476
BsiHKAI	GWGCWC	2 cut(s)	476, 827
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	476, 827
Bsp143I	GATC	4 cut(s)	135, 241, 522, 733
BspACI	CCGC	6 cut(s)	211, 390, 414, 485, 578, 738
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	3 cut(s)	628, 667, 790
BspFNI	CGCG	2 cut(s)	572, 738
BspLI	GGNNCC	1 cut(s)	597
BspMI	ACCTGC	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	645
BspPI	GGATC	2 cut(s)	130, 236
BspQI	GCTCTTC	1 cut(s)	772
BsrDI	GCAATG	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	393, 417, 441, 887
BssMI	GATC	4 cut(s)	135, 241, 522, 733
BssT1I	CCWWGG	2 cut(s)	393, 887
Bst4CI	ACNGT	3 cut(s)	239, 286, 993
Bst6I	CTCTTC	1 cut(s)	772
BstBAI	YACGTR	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	81, 643
BstDEI	CTNAG	7 cut(s)	381, 405, 429, 636, 654, 773, 798
BstDSI	CCRYGG	2 cut(s)	417, 441
BstF5I	GGATG	2 cut(s)	83, 793
BstFNI	CGCG	2 cut(s)	572, 738
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	207, 574, 669
BstKTI	GATC	4 cut(s)	138, 244, 525, 736
BstMBI	GATC	4 cut(s)	135, 241, 522, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 398, 422, 647, 831
BstSNI	TACGTA	1 cut(s)	160
BstUI	CGCG	2 cut(s)	572, 738
BstV1I	GCAGC	5 cut(s)	7, 499, 637, 691, 895
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	2 cut(s)	417, 441
BtsCI	GGATG	2 cut(s)	83, 793
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	2 cut(s)	81, 643
CfoI	GCGC	3 cut(s)	207, 574, 669
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	1 cut(s)	469
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	7 cut(s)	381, 405, 429, 636, 654, 773, 798
DpnI	GATC	4 cut(s)	137, 243, 524, 735
DpnII	GATC	4 cut(s)	135, 241, 522, 733
DraIII	CACNNNGTG	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
Eco105I	TACGTA	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	393, 887
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	393, 887
ErhI	CCWWGG	2 cut(s)	393, 887
FaeI	CATG	1 cut(s)	472
FaiI	YATR	7 cut(s)	117, 470, 843, 858, 869, 945, 954
FatI	CATG	1 cut(s)	468
FauI	CCCGC	3 cut(s)	397, 421, 731
Fnu4HI	GCNGC	6 cut(s)	21, 485, 488, 651, 705, 884
FokI	GGATG	2 cut(s)	70, 780
Fsp4HI	GCNGC	6 cut(s)	21, 485, 488, 651, 705, 884
FspBI	CTAG	1 cut(s)	642
FspI	TGCGCA	1 cut(s)	668
GlaI	GCGC	3 cut(s)	206, 573, 668
GluI	GCNGC	6 cut(s)	21, 485, 488, 651, 705, 884
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	3 cut(s)	207, 574, 669
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	3 cut(s)	205, 572, 667
HinP1I	GCGC	3 cut(s)	205, 572, 667
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	2 cut(s)	127, 755
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	5 cut(s)	185, 200, 619, 695, 910
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	3 cut(s)	88, 132, 657
Hpy188III	TCNNGA	5 cut(s)	111, 333, 526, 797, 971
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4III	ACNGT	3 cut(s)	239, 286, 993
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 398, 422, 647, 831
HpyF3I	CTNAG	7 cut(s)	381, 405, 429, 636, 654, 773, 798
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	3 cut(s)	205, 572, 667
Kzo9I	GATC	4 cut(s)	135, 241, 522, 733
LguI	GCTCTTC	1 cut(s)	772
LmnI	GCTCC	7 cut(s)	202, 297, 313, 382, 406, 430, 769
Lsp1109I	GCAGC	5 cut(s)	7, 499, 637, 691, 895
LweI	GCATC	2 cut(s)	92, 802
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	142, 188, 836
MalI	GATC	4 cut(s)	137, 243, 524, 735
MboI	GATC	4 cut(s)	135, 241, 522, 733
MboII	GAAGA	4 cut(s)	74, 145, 743, 789
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	476, 827
MluCI	AATT	7 cut(s)	218, 225, 263, 565, 902, 966, 975
MmeI	TCCRAC	2 cut(s)	111, 672
MnlI	CCTC	9 cut(s)	107, 241, 501, 585, 631, 721, 745, 760, 793
MseI	TTAA	1 cut(s)	978
MspI	CCGG	1 cut(s)	477
MvnI	CGCG	2 cut(s)	572, 738
MwoI	GCNNNNNNNGC	5 cut(s)	89, 398, 422, 647, 831
NdeII	GATC	4 cut(s)	135, 241, 522, 733
NheI	GCTAGC	1 cut(s)	641
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	188
NsbI	TGCGCA	1 cut(s)	668
PaqCI	CACCTGC	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	127, 755
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	22, 486, 489, 652, 706, 885
Ppu21I	YACGTR	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	978
SatI	GCNGC	6 cut(s)	21, 485, 488, 651, 705, 884
Sau3AI	GATC	4 cut(s)	135, 241, 522, 733
Sau96I	GGNCC	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	476, 827
SfaNI	GCATC	2 cut(s)	92, 802
SgrAI	CRCCGGYG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SnaBI	TACGTA	1 cut(s)	160
Sse9I	AATT	7 cut(s)	218, 225, 263, 565, 902, 966, 975
SsiI	CCGC	6 cut(s)	211, 390, 414, 485, 578, 738
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	1 cut(s)	642
StyI	CCWWGG	2 cut(s)	393, 887
TaaI	ACNGT	3 cut(s)	239, 286, 993
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	154, 758
TasI	AATT	7 cut(s)	218, 225, 263, 565, 902, 966, 975
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	127, 755
Tru1I	TTAA	1 cut(s)	978
Tru9I	TTAA	1 cut(s)	978
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	5 cut(s)	20, 487, 650, 704, 883
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	890
TspGWI	ACGGA	3 cut(s)	434, 458, 602
XapI	RAATTY	2 cut(s)	218, 263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.