Rmu_co8291603.1_g000001

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8291603.1
OG0010040
Physical Location & Seq
Forward (+)
1 .. 323
323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8291603.1_g000001.1.cds

Sequence Viewer

Length: 323 bp
agaaagaaaagagtgatgggttttcggcaaatgctcaaaatgtcgaagaaaaatcacctactactgaagatgctaatcgcggtaaaagggttgatcgggaatattcaacaaaggaggatgcaaaaactgaggagtactgtagtatgaggccacgagggcgtggttatttcaggcaggttgttgatgggttggtcatggagctcaaggagccaaggaaagtggtaataaacttggctgtggcaattggatttgttctagtaataggtttatatgttaaatatgctgtcaattccattgaggaattcaaacgccaagagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

8.0

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 2 cut(s) 107, 306
AluBI AGCT 2 cut(s) 201, 318
AluI AGCT 2 cut(s) 201, 318
Alw21I GWGCWC 1 cut(s) 203
AoxI GGCC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 47
BanII GRGCYC 1 cut(s) 203
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 2 cut(s) 10, 178
BfaI CTAG 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 156
BmcAI AGTACT 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 2 cut(s) 60, 108
BpuEI CTTGAG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 74
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 203
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 156, 207
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 135
CspCI CAANNNNNGTGG 2 cut(s) 200, 235
CviAII CATG 1 cut(s) 195
CviJI RGCY 5 cut(s) 150, 201, 210, 235, 318
CviKI_1 RGCY 5 cut(s) 150, 201, 210, 235, 318
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 198
FaiI YATR 5 cut(s) 145, 196, 270, 272, 281
FatI CATG 1 cut(s) 194
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 150
Hin1II CATG 1 cut(s) 198
HphI GGTGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 207
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 198
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 198, 207
LpnPI CCDG 2 cut(s) 156, 160
LweI GCATC 2 cut(s) 60, 108
MaeI CTAG 1 cut(s) 256
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 58, 79
MfeI CAATTG 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 3 cut(s) 242, 288, 301
MnlI CCTC 5 cut(s) 108, 123, 140, 148, 291
MseI TTAA 1 cut(s) 275
MunI CAATTG 1 cut(s) 242
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 156, 207
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 209
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 1 cut(s) 93
ScaI AGTACT 1 cut(s) 136
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 60, 179, 203, 267, 320
SfaNI GCATC 2 cut(s) 60, 108
SfcI CTRYAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 242, 288, 301
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 256
SstI GAGCTC 1 cut(s) 203
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 44
TasI AATT 3 cut(s) 242, 288, 301
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
XapI RAATTY 1 cut(s) 301
XspI CTAG 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.