Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031431.1

Orthogroup ID

OG0010040

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 633

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

gcaactgaaaaaccaccaccacccgcagaagcaaaaattccaaagcctcaaaagcccacaagcagcactaccacttatgtatcacaacccgcagcagcttcggctcaggagatcaacaatgctcaaaagaccaatgctgccgctcaagaacaagtaccgccttcaaaacccattcaggagaacaaaaccgatggatctctagagaaggagaaggtatatgcagctgttactactgatcaaccaagtaaggtggataagagcggtactacttatgagggagcagctgagacttctaagaagacatcaatgaagaaagaaaagagtgatgggttttcggcaaatgctcaaaatgtcgaagaaaaatcacctactactgaagatgctaatcgcggtaaaagggttgatcgggaatattcaacaaaggaggatgcaaaaagtgaggagtactgtattatgaggccacgagggcgtggttatttcaggcaggttgttgatgggttggtcatggagctcaaggagccaaggaaagtggtaataaacttggctgtggcaattggatttgttctagtaataggtttatatgttaaatatgctgtcaattccattgaggaattcaaacgccaagagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

210

Amino Acids

23.07

Weight (kDa)

8.75

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27140 AT5G20970
fragaria_vesca	FvH4_3g27040 FvH4_3g27040
malus_domestica	MD03G1162700.v1.1 MD11G1178700.v1.1
prunus_persica	Prupe.6G151500_v2.0.a1
pyrus_communis	pycom03g11540 pycom11g15410
rosa_chinensis	RchiOBHm_Chr5g0049611
rosa_laevigata	RLG00000034627
rosa_multiflora	Rmu_co8291603.1_g000001 Rmu_sc0031431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032090
rosa_rugosa	Rorug05G0249200
rosa_samantha	Rh2BG376800 Rh5AG325600 Rh5BG337000 Rh5CG361700 Rh5DG349200
rosa_wichuraiana	Rw5G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	2 cut(s)	143, 261
AccII	CGCG	1 cut(s)	390
AciI	CCGC	6 cut(s)	24, 90, 141, 158, 261, 390
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	36, 611
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	156, 265, 446
AgsI	TTSAA	3 cut(s)	165, 417, 616
AluBI	AGCT	5 cut(s)	98, 224, 284, 511, 628
AluI	AGCT	5 cut(s)	98, 224, 284, 511, 628
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	6 cut(s)	63, 92, 95, 137, 221, 281
ApoI	RAATTY	2 cut(s)	36, 611
AsuHPI	GGTGA	1 cut(s)	357
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BanII	GRGCYC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	6 cut(s)	75, 104, 107, 124, 233, 293
BccI	CCATC	3 cut(s)	185, 320, 488
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	200, 566
BfuAI	ACCTGC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	466
BisI	GCNGC	7 cut(s)	64, 93, 96, 138, 141, 222, 282
BlsI	GCNGC	7 cut(s)	65, 94, 97, 139, 142, 223, 283
BmcAI	AGTACT	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	519
BmsI	GCATC	2 cut(s)	370, 418
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	129, 497
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	119, 276
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	6 cut(s)	75, 104, 107, 124, 233, 293
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	111, 194, 235, 403
BspACI	CCGC	6 cut(s)	24, 90, 141, 158, 261, 390
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	118, 277
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	202
BsrBI	CCGCTC	2 cut(s)	143, 261
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	4 cut(s)	111, 194, 235, 403
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	105, 285, 294
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	4 cut(s)	114, 197, 238, 406
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	111, 194, 235, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 101, 466, 517
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	6 cut(s)	75, 104, 107, 124, 233, 293
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	155, 264, 445
CspCI	CAANNNNNGTGG	4 cut(s)	231, 266, 510, 545
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	3 cut(s)	155, 264, 445
DdeI	CTNAG	3 cut(s)	105, 285, 294
DpnI	GATC	4 cut(s)	113, 196, 237, 405
DpnII	GATC	4 cut(s)	111, 194, 235, 403
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	1 cut(s)	508
FaiI	YATR	9 cut(s)	78, 217, 219, 273, 455, 506, 580, 582, 591
FatI	CATG	1 cut(s)	504
FauI	CCCGC	2 cut(s)	31, 97
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	7 cut(s)	64, 93, 96, 138, 141, 222, 282
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	7 cut(s)	64, 93, 96, 138, 141, 222, 282
FspBI	CTAG	2 cut(s)	200, 566
GluI	GCNGC	7 cut(s)	64, 93, 96, 138, 141, 222, 282
HaeIII	GGCC	1 cut(s)	460
Hin1II	CATG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	357
Hpy188III	TCNNGA	5 cut(s)	107, 146, 176, 200, 407
HpyAV	CCTTC	3 cut(s)	171, 199, 205
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	221, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 101, 466, 517
HpyF3I	CTNAG	3 cut(s)	105, 285, 294
Hsp92II	CATG	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	111, 194, 235, 403
LmnI	GCTCC	3 cut(s)	278, 508, 517
LpnPI	CCDG	4 cut(s)	92, 161, 466, 470
Lsp1109I	GCAGC	6 cut(s)	75, 104, 107, 124, 233, 293
LweI	GCATC	2 cut(s)	370, 418
MaeI	CTAG	2 cut(s)	200, 566
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	113, 196, 237, 405
MbiI	CCGCTC	2 cut(s)	143, 261
MboI	GATC	4 cut(s)	111, 194, 235, 403
MboII	GAAGA	4 cut(s)	310, 322, 368, 389
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	4 cut(s)	36, 552, 598, 611
MnlI	CCTC	7 cut(s)	57, 268, 418, 433, 450, 458, 601
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	2 cut(s)	224, 284
MunI	CAATTG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	52, 101, 466, 517
NdeII	GATC	4 cut(s)	111, 194, 235, 403
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	519
PkrI	GCNGC	7 cut(s)	65, 94, 97, 139, 142, 223, 283
Psp124BI	GAGCTC	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	2 cut(s)	224, 284
RsaI	GTAC	3 cut(s)	156, 265, 446
RsaNI	GTAC	3 cut(s)	155, 264, 445
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	7 cut(s)	64, 93, 96, 138, 141, 222, 282
Sau3AI	GATC	4 cut(s)	111, 194, 235, 403
ScaI	AGTACT	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	370, 418
SmlI	CTYRAG	2 cut(s)	144, 512
SmoI	CTYRAG	2 cut(s)	144, 512
Sse9I	AATT	4 cut(s)	36, 552, 598, 611
SsiI	CCGC	6 cut(s)	24, 90, 141, 158, 261, 390
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	2 cut(s)	200, 566
SstI	GAGCTC	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	354
TasI	AATT	4 cut(s)	36, 552, 598, 611
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseI	GCWGC	6 cut(s)	63, 92, 95, 137, 221, 281
TspDTI	ATGAA	1 cut(s)	323
XapI	RAATTY	2 cut(s)	36, 611
XbaI	TCTAGA	1 cut(s)	199
XspI	CTAG	2 cut(s)	200, 566
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.