Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010040

Physical Location & Seq

Genomic Coordinates Forward (+)

43267749 .. 43269461

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG361700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACAACGGAGGGAAGGCCATTTGCAGCAACAGCTAATCGGGTTTATGAAGATATTGAACTACCGTCATCAGCAGAGTGGGTTCAAGACGAAGGATATGACACTCTCATTGTCAATCTACAGGGATATATGAAGGAGAATCTGAGGATCCAAGTAACCTCAACTCGGAACATAAGGGTACTCGGTGAACGCCCAGTTCGTCCGGAAAACAATGTATGGCAGCGCTTCCGCAGAGAATTTCAAGTTCCATCAAACTGTGATGTTAATGAAACCTCTGCCAGGTTTGACAACGGCTTCCTTTACGTCAAGATTCCGAAAACCATAGCTCCGGTCGAGACAGCAGCACAAAAGGATCAGAAACCACTAAAGCCAGCAACTGAAAAACCACCACCACCCGCAGAAGCAAAAATTCCAAAGCCTCAAAAGCCCACAAGCAGCACTACTACTTATGTACCACAACCCGCAGCAGCTTCAGCTCAGGAGATCAACAATGCTCAAAAGACCAATGCTGCGGCTCAAGAACAAGTACCGCCTTCAAAAGAATCAAAACCCATTCAGGAGAACAAAACCGATGGATCTCTAGAGAAGGAGAAGGTATATGCAGCTGTTACTACTGATCAACCAAGTAAGGTGGATAAGAGCGGTACTAATTTTGAGGGAGCAGCTGAGGCTAGCATTAGTGGTACTTCTAAGAAGACATCAATGGAGAAAGAAAAGAGTGATGAGTTTTCGGCAAATGCTCAAAATGTCGAAGAAAAATCACCTACTACTGAAGATGCTAATCGCGGTAAAAGGGTTGATCAGGAATATTCAACAAAGGAGGATGCAAAAACTGAGGAGTACTGTAGTATGAGGCCACGAGGGCGTGGTTATTTCAGGCAGGTTGTTGATGGGTTGGTCATGGAGCTCAAGGAGCCGAGGAAATTGGTAAACTTGGCTGTGGCAATTGGATTTGTTCTAGTAATAGGCTTATATGTTAAATATGCTATCAATTCCATTGAGGAATTCAAACGCCAAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

341

Amino Acids

38.07

Weight (kDa)

6.02

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	32 - 112	2.8e-10	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27140 AT5G20970
fragaria_vesca	FvH4_3g27040 FvH4_3g27040
malus_domestica	MD03G1162700.v1.1 MD11G1178700.v1.1
prunus_persica	Prupe.6G151500_v2.0.a1
pyrus_communis	pycom03g11540 pycom11g15410
rosa_chinensis	RchiOBHm_Chr5g0049611
rosa_laevigata	RLG00000034627
rosa_multiflora	Rmu_co8291603.1_g000001 Rmu_sc0031431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032090
rosa_rugosa	Rorug05G0249200
rosa_samantha	Rh2BG376800 Rh5AG325600 Rh5BG337000 Rh5CG361700 Rh5DG349200
rosa_wichuraiana	Rw5G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	642
AccII	CGCG	1 cut(s)	786
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	7 cut(s)	229, 396, 462, 512, 530, 642, 786
AclWI	GGATC	4 cut(s)	142, 155, 360, 583
AcsI	RAATTY	3 cut(s)	236, 408, 1004
AcuI	CTGAAG	2 cut(s)	456, 792
AfaI	GTAC	6 cut(s)	180, 453, 528, 646, 685, 842
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	165, 279
AgsI	TTSAA	6 cut(s)	59, 86, 242, 537, 813, 1009
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	8 cut(s)	35, 326, 470, 476, 605, 665, 907, 1021
AluI	AGCT	8 cut(s)	35, 326, 470, 476, 605, 665, 907, 1021
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	4 cut(s)	142, 155, 360, 583
AlwNI	CAGNNNCTG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	202
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	2 cut(s)	17, 854
ApeKI	GCWGC	9 cut(s)	26, 220, 341, 435, 464, 467, 509, 602, 662
ApoI	RAATTY	3 cut(s)	236, 408, 1004
AspLEI	GCGC	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	197, 753
AsuNHI	GCTAGC	1 cut(s)	671
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BamHI	GGATCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	909
BauI	CACGAG	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	909
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	9 cut(s)	38, 232, 353, 447, 476, 479, 496, 614, 674
BccI	CCATC	3 cut(s)	256, 566, 884
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	2 cut(s)	616, 799
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	3 cut(s)	581, 672, 959
BfmI	CTRYAG	2 cut(s)	119, 844
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	871
BglI	GCCNNNNNGGC	1 cut(s)	862
BmcAI	AGTACT	1 cut(s)	842
Bme1390I	CCNGG	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	149, 915
BmrFI	CCNGG	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	766, 814
BmtI	GCTAGC	1 cut(s)	675
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	701
Bpu10I	CCTNAGC	2 cut(s)	477, 666
BpuEI	CTTGAG	2 cut(s)	501, 893
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	1 cut(s)	917
BsaWI	WCCGGW	2 cut(s)	202, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 279
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	917
BseGI	GGATG	1 cut(s)	829
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	165, 279
BseMII	CTCAG	4 cut(s)	134, 491, 657, 825
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	9 cut(s)	38, 232, 353, 447, 476, 479, 496, 614, 674
Bsh1236I	CGCG	1 cut(s)	786
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	19, 856
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	203, 329
BslI	CCNNNNNNNGG	2 cut(s)	165, 279
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	19, 856
Bsp1286I	GDGCHC	1 cut(s)	909
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
BspACI	CCGC	7 cut(s)	229, 396, 462, 512, 530, 642, 786
BspANI	GGCC	2 cut(s)	19, 856
BspCNI	CTCAG	4 cut(s)	135, 490, 658, 826
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	786
BspLI	GGNNCC	2 cut(s)	149, 915
BspMI	ACCTGC	1 cut(s)	871
BspOI	GCTAGC	1 cut(s)	675
BspPI	GGATC	4 cut(s)	142, 155, 360, 583
BsrBI	CCGCTC	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	917
BssMI	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
BssSI	CACGAG	1 cut(s)	858
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	66, 257, 845
BstC8I	GCNNGC	2 cut(s)	372, 673
BstDEI	CTNAG	5 cut(s)	143, 477, 666, 690, 834
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	1 cut(s)	786
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	6 cut(s)	150, 355, 486, 578, 619, 802
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 424, 473, 668, 862, 913
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	2 cut(s)	119, 844
BstUI	CGCG	1 cut(s)	786
BstV1I	GCAGC	9 cut(s)	38, 232, 353, 447, 476, 479, 496, 614, 674
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	147, 575
BstYI	RGATCY	2 cut(s)	147, 575
BsuRI	GGCC	2 cut(s)	19, 856
BtsCI	GGATG	1 cut(s)	829
BveI	ACCTGC	1 cut(s)	871
Cac8I	GCNNGC	2 cut(s)	372, 673
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	225
Csp6I	GTAC	6 cut(s)	179, 452, 527, 645, 684, 841
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	1 cut(s)	901
CviQI	GTAC	6 cut(s)	179, 452, 527, 645, 684, 841
DdeI	CTNAG	5 cut(s)	143, 477, 666, 690, 834
DpnI	GATC	6 cut(s)	149, 354, 485, 577, 618, 801
DpnII	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
Ecl136II	GAGCTC	1 cut(s)	907
Eco24I	GRGCYC	1 cut(s)	909
Eco47III	AGCGCT	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	907
Eco57I	CTGAAG	2 cut(s)	456, 792
EcoICRI	GAGCTC	1 cut(s)	907
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	909
FaeI	CATG	1 cut(s)	904
FatI	CATG	1 cut(s)	900
FauI	CCCGC	2 cut(s)	403, 469
FbaI	TGATCA	2 cut(s)	616, 799
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	1 cut(s)	909
FspBI	CTAG	3 cut(s)	581, 672, 959
GlaI	GCGC	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	19, 856
HapII	CCGG	2 cut(s)	203, 329
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	904
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	139, 310, 542
HpaII	CCGG	2 cut(s)	203, 329
HphI	GGTGA	2 cut(s)	197, 753
Hpy166II	GTNNAC	2 cut(s)	188, 931
Hpy188I	TCNGA	4 cut(s)	144, 168, 315, 357
Hpy188III	TCNNGA	9 cut(s)	86, 203, 307, 334, 479, 518, 557, 581, 803
Hpy8I	GTNNAC	2 cut(s)	188, 931
HpyAV	CCTTC	6 cut(s)	9, 86, 127, 543, 580, 586
HpyCH4III	ACNGT	3 cut(s)	66, 257, 845
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	26, 602, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 424, 473, 668, 862, 913
HpyF3I	CTNAG	5 cut(s)	143, 477, 666, 690, 834
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	904
HspAI	GCGC	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	202
Ksp22I	TGATCA	2 cut(s)	616, 799
Kzo9I	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
LmnI	GCTCC	4 cut(s)	331, 659, 904, 913
Lsp1109I	GCAGC	9 cut(s)	38, 232, 353, 447, 476, 479, 496, 614, 674
LweI	GCATC	2 cut(s)	766, 814
MaeI	CTAG	3 cut(s)	581, 672, 959
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	154, 607
MalI	GATC	6 cut(s)	149, 354, 485, 577, 618, 801
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
MboII	GAAGA	4 cut(s)	62, 706, 764, 785
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	2 cut(s)	147, 575
MhlI	GDGCHC	1 cut(s)	909
MluCI	AATT	7 cut(s)	236, 408, 649, 923, 945, 991, 1004
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	2 cut(s)	264, 978
MspA1I	CMGCKG	2 cut(s)	605, 665
MspI	CCGG	2 cut(s)	203, 329
MspR9I	CCNGG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	945
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	6 cut(s)	32, 424, 473, 668, 862, 913
NdeII	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	1 cut(s)	904
NlaIV	GGNNCC	2 cut(s)	149, 915
NmeAIII	GCCGAG	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	139, 310, 542
Psp124BI	GAGCTC	1 cut(s)	909
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	149, 915
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	147, 575
PvuII	CAGCTG	2 cut(s)	605, 665
RsaI	GTAC	6 cut(s)	180, 453, 528, 646, 685, 842
RsaNI	GTAC	6 cut(s)	179, 452, 527, 645, 684, 841
SacI	GAGCTC	1 cut(s)	909
SaqAI	TTAA	2 cut(s)	264, 978
Sau3AI	GATC	6 cut(s)	147, 352, 483, 575, 616, 799
ScaI	AGTACT	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	909
SfaNI	GCATC	2 cut(s)	766, 814
SfcI	CTRYAG	2 cut(s)	119, 844
SmlI	CTYRAG	2 cut(s)	516, 908
SmoI	CTYRAG	2 cut(s)	516, 908
Sse9I	AATT	7 cut(s)	236, 408, 649, 923, 945, 991, 1004
SsiI	CCGC	7 cut(s)	229, 396, 462, 512, 530, 642, 786
SspI	AATATT	1 cut(s)	809
SspMI	CTAG	3 cut(s)	581, 672, 959
SstI	GAGCTC	1 cut(s)	909
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	3 cut(s)	66, 257, 845
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	333, 750
TasI	AATT	7 cut(s)	236, 408, 649, 923, 945, 991, 1004
TatI	WGTACW	1 cut(s)	840
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	139, 310, 542
Tru1I	TTAA	2 cut(s)	264, 978
Tru9I	TTAA	2 cut(s)	264, 978
TseI	GCWGC	9 cut(s)	26, 220, 341, 435, 464, 467, 509, 602, 662
TspDTI	ATGAA	3 cut(s)	63, 146, 282
TspGWI	ACGGA	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	3 cut(s)	236, 408, 1004
XbaI	TCTAGA	1 cut(s)	580
XspI	CTAG	3 cut(s)	581, 672, 959
ZrmI	AGTACT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.