Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

20526807 .. 20527412

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGAAATGGTGTTGTAGTTGATAGGTTTGCTGCTGAAACATTTCATGATTTGCACGAAGAAGTGATGGCAACAGCTACAAGAGGCCATGGTCTAATGGTTCGTGTCCAACAGCTTGAAGCAGATTTTCCTACAATTGAGGAGGCACTTTTATTACAGACTAATCATTCATCATTCTTTTCAAATTCAGGGAGGGTTCGAGAGAGAGATAGAGAGGACAGAGGAGCCGCCCTCCTTCCAGGCGCGCCACCGCCGCCATCAGGCCACCGCCGGACGATCGGCGACCATCATCGGAATCGCCTCTCTCTCCTCTGTATCCATGTCAGAAAACCCGACATGCATCCATCCCTTCTTCAAATCGGAATCCAAACCCTAAAGCCCCCAATCGATTTTTCCGGCCGATTCATCCTTCTCCGGCGAAGCCTTTGCTCCTCAAAGGTAACCTCTTCTCCCCTTGTTCGATTTCGAGCCGTCTTGAGCTTTGCTTTTCAGTTTGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.79

Weight (kDa)

10.19

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	4 cut(s)	228, 251, 254, 268
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	119, 183, 356
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	3 cut(s)	77, 115, 480
AluI	AGCT	3 cut(s)	77, 115, 480
Alw26I	GTCTC	1 cut(s)	492
AoxI	GGCC	3 cut(s)	85, 262, 397
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	184
AscI	GGCGCGCC	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	245, 247
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	4 cut(s)	61, 265, 294, 352
BceAI	ACGGC	1 cut(s)	455
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	33, 228, 254
BlsI	GCNGC	3 cut(s)	34, 229, 255
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpuEI	CTTGAG	1 cut(s)	496
Bsa29I	ATCGAT	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	340, 344, 405
BseLI	CCNNNNNNNGG	1 cut(s)	260
BsePI	GCGCGC	1 cut(s)	243
BseRI	GAGGAG	4 cut(s)	155, 237, 299, 421
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	2 cut(s)	279, 400
BshFI	GGCC	3 cut(s)	87, 264, 399
BshVI	ATCGAT	1 cut(s)	387
BsiEI	CGRYCG	2 cut(s)	279, 400
BsiSI	CCGG	3 cut(s)	271, 396, 415
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	87, 264, 399
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	4 cut(s)	228, 251, 254, 268
BspANI	GGCC	3 cut(s)	87, 264, 399
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	88
BssHII	GCGCGC	1 cut(s)	243
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	340, 344, 405
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	245, 247
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	2 cut(s)	279, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	87, 264, 399
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	340, 344, 405
Cac8I	GCNNGC	1 cut(s)	245
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	2 cut(s)	245, 247
ClaI	ATCGAT	1 cut(s)	387
CviAII	CATG	4 cut(s)	47, 89, 320, 337
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EclXI	CGGCCG	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	4 cut(s)	50, 92, 323, 340
FaiI	YATR	4 cut(s)	48, 90, 321, 338
FatI	CATG	4 cut(s)	46, 88, 319, 336
Fnu4HI	GCNGC	3 cut(s)	33, 228, 254
FokI	GGATG	3 cut(s)	327, 331, 392
Fsp4HI	GCNGC	3 cut(s)	33, 228, 254
GlaI	GCGC	2 cut(s)	244, 246
GluI	GCNGC	3 cut(s)	33, 228, 254
HaeIII	GGCC	3 cut(s)	87, 264, 399
HapII	CCGG	3 cut(s)	271, 396, 415
HhaI	GCGC	2 cut(s)	245, 247
Hin1II	CATG	4 cut(s)	50, 92, 323, 340
Hin6I	GCGC	2 cut(s)	243, 245
HinP1I	GCGC	2 cut(s)	243, 245
HinfI	GANTC	3 cut(s)	295, 363, 402
HpaII	CCGG	3 cut(s)	271, 396, 415
Hpy188I	TCNGA	3 cut(s)	294, 326, 362
Hpy188III	TCNNGA	3 cut(s)	47, 200, 475
HpyAV	CCTTC	3 cut(s)	245, 359, 419
HpyCH4V	TGCA	2 cut(s)	55, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	50, 92, 323, 340
HspAI	GCGC	2 cut(s)	243, 245
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	224, 434
LpnPI	CCDG	7 cut(s)	174, 225, 246, 252, 284, 409, 428
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	3 cut(s)	71, 344, 438
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	2 cut(s)	135, 184
MmeI	TCCRAC	1 cut(s)	133
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	42
MspI	CCGG	3 cut(s)	271, 396, 415
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	4 cut(s)	50, 92, 323, 340
NlaIV	GGNNCC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	1 cut(s)	340
PagI	TCATGA	1 cut(s)	46
PalAI	GGCGCGCC	1 cut(s)	243
PauI	GCGCGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	295, 363, 402
PkrI	GCNGC	3 cut(s)	34, 229, 255
Ple19I	CGATCG	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	226
PteI	GCGCGC	1 cut(s)	243
PvuI	CGATCG	1 cut(s)	279
SatI	GCNGC	3 cut(s)	33, 228, 254
Sau3AI	GATC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	6 cut(s)	29, 79, 117, 441, 446, 482
SfaNI	GCATC	1 cut(s)	349
SgsI	GGCGCGCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	2 cut(s)	135, 184
SsiI	CCGC	4 cut(s)	228, 251, 254, 268
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	88
TaqI	TCGA	4 cut(s)	199, 387, 460, 466
TasI	AATT	2 cut(s)	135, 184
TauI	GCSGC	2 cut(s)	230, 256
TfiI	GAWTC	3 cut(s)	295, 363, 402
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	35, 159, 394
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.