Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8405745.1

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1230

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8405745.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgagaattggtgctctgattaataggtttgctgctgaaatatttcatgacttgcatgaagaagtaatggcaaccgccacaagaggccacggtctaatggttcgtgtgcaacagcttgaagcagattttccttcaattgagaaggcacttctatctcaaacgaatcattcgccatttttttcaaatacaggtgttgactggcatcctaatctgcgttgcgaacagaatctgatcacccgtggagacttacctcgctttgtaatggattcttatgaagaatgccgtgctcctcctcggttattccttctggacaagtttgatgttgctggggctggggcatgtttaaagcgatacactgatccgtcattctttaaagtggaatcggcatactcattagcaccagcagatatgcagagagaaaggaagatccgtaaagtaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.81

Weight (kDa)

7.78

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	353, 421
AgsI	TTSAA	3 cut(s)	119, 135, 183
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	2 cut(s)	16, 289
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	353, 421
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	16, 289
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmsI	GCATC	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	88, 238, 293
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	88, 238, 293
BseGI	GGATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	279, 282
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	2 cut(s)	326, 332
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	16, 289
BsmAI	GTCTC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	16, 289
Bsp143I	GATC	3 cut(s)	231, 358, 426
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	46
BspPI	GGATC	2 cut(s)	353, 421
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	88, 238, 293
BssMI	GATC	3 cut(s)	231, 358, 426
Bst4CI	ACNGT	1 cut(s)	92
BstDSI	CCRYGG	2 cut(s)	88, 238
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	234, 361, 429
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	231, 358, 426
BstNSI	RCATGY	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	2 cut(s)	88, 238
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	1 cut(s)	46
CviAII	CATG	3 cut(s)	47, 56, 339
CviJI	RGCY	3 cut(s)	87, 115, 332
CviKI_1	RGCY	3 cut(s)	87, 115, 332
DpnI	GATC	3 cut(s)	233, 360, 428
DpnII	GATC	3 cut(s)	231, 358, 426
DraI	TTTAAA	2 cut(s)	345, 373
FaeI	CATG	3 cut(s)	50, 59, 342
FaiI	YATR	6 cut(s)	48, 57, 273, 340, 388, 410
FatI	CATG	3 cut(s)	46, 55, 338
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	2 cut(s)	330, 336
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	50, 59, 342
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	163, 226, 266, 380
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	18, 231
Hpy188III	TCNNGA	2 cut(s)	47, 308
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	136, 141, 314
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	55, 109, 412
Hsp92II	CATG	3 cut(s)	50, 59, 342
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	231, 358, 426
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	174, 184, 293, 312, 318, 414
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	211
MalI	GATC	3 cut(s)	233, 360, 428
MboI	GATC	3 cut(s)	231, 358, 426
MboII	GAAGA	3 cut(s)	71, 287, 436
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	16, 289
MluCI	AATT	2 cut(s)	6, 135
MnlI	CCTC	4 cut(s)	77, 261, 300, 303
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	3 cut(s)	21, 344, 372
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	231, 358, 426
NlaIII	CATG	3 cut(s)	50, 59, 342
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	1 cut(s)	46
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	163, 226, 266, 380
PkrI	GCNGC	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	21
PspFI	CCCAGC	2 cut(s)	326, 332
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	21, 344, 372
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	231, 358, 426
SduI	GDGCHC	2 cut(s)	16, 289
SetI	ASST	4 cut(s)	29, 117, 193, 253
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	6, 135
SsiI	CCGC	1 cut(s)	75
SspI	AATATT	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	2 cut(s)	6, 135
TfiI	GAWTC	4 cut(s)	163, 226, 266, 380
Tru1I	TTAA	3 cut(s)	21, 344, 372
Tru9I	TTAA	3 cut(s)	21, 344, 372
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	35, 72, 288
TspGWI	ACGGA	2 cut(s)	351, 419
TspRI	CASTG	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	21
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.