Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

26143564 .. 26151038

Gene Structure 7475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1181800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4794 bp

ATGCCGTTGACGAGGTACCAGATAAGGAACGAGTACGGCTTGGCCGATCCGGAACTGTACGGAGCAGCCGATAGGGATGATCCGGAGGCTCTTCTGGAAGGCGTGGCCATGGCGGGCCTCGTCGGCGTTTTGCGGCAGCTGGGCGACCTTGCCGAGTTTGCTGCTGAAATATTTCATGACTTGCACGAGGAAGTAATGGGAACCGCTACACGAGGCCACGGTCTAGTGGTTCGTGTCCAACAGCTTGAAGCAGACTTTCCTTCAATTGAGAAGGCACTTCTATCTCAAACCAATCATTCTTCATTCTTTTCCAACCCAGGGGTTGATTGGCATCCTAATCTGCGTTCTGAACAGAATATGATCACCCGTGGAGACTTACCTCGCTTTGTAATGGATTCTTATGAAGAATGCCGTGGTCCTCCCCGGCTGTTCCTTTTGGACAAGTTTGATGTTGCTGGAGCTGGGGCATGTTTGAAGCGGTACACTGATCCATCATTCTTTAAAGTCGAATCAGCATCTTCAATAACAGTAGAGATGCAGAGAGAAAAGAAAACCCGTAAAGTGAAGAAGAAAGGATCCCGCTGGAGGAATGGAGAAACCCCAGAAGTTGCACTGACGTCACATGCCAAGTCAAATGCCAAACTGCATGAATTGTTCCTGGAGGAGCGTATTGAGAATCGTTCCAGTGATCCTGTATGTCGTGTGAAATTGAAGAAAAGGCATTTGAATGGATCTGCAGTTGACTCAAAAACTGGGAAAAGTTACATGAAAACATTTCTGGAGACTCTTTCACCAGAACACAAACTTATTTGTGAAACTTCTGTTGCTCCACCGCTCTTGAGATTGACCTTAGATGATAGTGGTGAGCCAGACCTTAGAATACTTGACATCACTACAGTGAGTCCTGCTGAAATGTCCCCAGAAAGGGAAATTGCTAGCTTTTCACCTGATGTCCATAAAGATATATTAAAACCATCCATAGATGGCTTTAATAGGGGGGTTTTTGATAGAGAAATTCCAGAGGGGTCTGATCCAAACTCTGATGTTGAGACAAATGAAAATTATTCCAACCTTCATCAGGTGGCAGCAGATATGCAATTAGCAGTTGGTGGAGAACATAAAACTGAAGGCAGCATGGAGGGGTCCACCCTCTCCAGTTATGTTGAGAGGACAAGTGAGGTAGACAATTACATGGATGCTCTTGCAAATATAGAATCAGAAATGGAAATTAACAATGAATTTCAGCCTAAGAACAATCTACGCTTCCAGAATGTGGAGAAATATGGGATAGACTCTAATGCAGATGATGGGCATCTGGAGCTTCAAACTCGATTTTCGGATTCTCAATCAATTGGAAACTCCTCTACATCAGATGACGGGAAGAATTCATTTGAAAAAGATACAGCCAGTTTTTCGCACTCTGATAATCCAAACAATGTGGTTGAGAATTCACCATCAGAGTGTAATGGAGCAGCTAAAGAATTCCCTTTCACTGAAACCTGTGGAGCTGAGATTTTTGAGATGTCGTCCAACCAGCAATCTGAATTCGTGGATCCCCTAGCAGCCACAACAAAGAAGCATGCGTTGTCTCATAATGCATGCATTGTGGAAGACATAAACCCTGATCCTGGAGATACATCTTACAGTTCATTTGTTAGGGATACAAGTCCTACACTACAGCACTCAGACCCTGGAGCAAACTCGCCAGTGGTATCATTGGCCGGACCTGTGTTAGATGATACCCCCTCTGACGAAATTAAAGTTGGTTATAAATCACTAGACATTGATGAAAATGTGACAAATCTGGATAATTCTCTGGCTGTTGTCCCCAACTCCCAGACTAACGATGAATCCCCAAGTACTTCACCAAGACATCCTGTTGATGAATCAGATATAGAAGCTTTAGGTGTCAGTTCTGATGCTTTGCCACATTTATCAAAAGTTGAATCCCTTGCTTCTGAAGATCAAAGTGGAAATATTGCTGTGAATGAAATACTTCAGACACAATGTGCTGATGAAGATTCCTTAGAAAGATTTGCGAGAAAGTTTGATTCACCACGTTTAAGTATTTCATCAACAGAAGAGCAGCTTTCCTCAGCTCTGCCAGAAGAACAAACATCTTCAGTCAACTCTGAAGTAGTGCCGTTTATGGTGGATGCTGCACGGAATCATAGCTCAGAAGAGCCTGCAGTGGACGCTGCACAGAGTCATAGCTCAGAAGAGCCTGTAGTGGATGCTCCACAGACACATGGTCTAATAGATCAGCAGGATGCTTGGCAGGCACATTTCCTAACCGAGCAGCAGGATGCTCCAGAGACATGTGGCCTAACAAAGCAGCAGGATGCTTCACAAACACATGGCCTAACAAAGCAGCAGGATGCTTCACAAACACATGGCCTAACAGAGCAGCAGGATGTTCCCCAGACAAATGGCCTAATAGAGCAGCAATTATCTGATTTAGACGAGGACGTTCCCCAAATTGAATCTGTTAAAGAAGAAGCGGGTGTTCCACATTATGAAGAAAAATTCAATGTAGAAGAGAGATCTAGGGCCATGGATGACGAGGAATTACGATTATTCACCAGCCATGCCGATGTAGGAGGTGATATCGTTTCTGTGGAACTGACATCTAATTGTCCAACTTTCCCAGGCCATGAGGATCATGTGGATTCAGATGAAGTGGTGCCTGAAACACTAAATGTAGAAACTGTTGCTGTGCCCTCTGCTGCTGTTGCCGAACCTGATAATGACGTCAATGATGTCAGTTATTCATCTCCAAATGCAATTTCTTCTTCACCAACGAATTTTATAAATTTGCATGGATCTCTTCCAGGATTTGGGGATTTTCGTGACAAAGAATCTGAACTGGATGAGGTTTCTCCAGAATCTGTCACAGACTCAGAAGTGCAAATGGAAGCAAGTAAAACAGATGTTTCTCCAGATTCAGAATCTAACTCAAGTCAAACAGTTACTCATGACCATTCCAGTCCAAAAGCATCTGATGATGGTCAAAATTTCTCTCTGGATGAACAGATTGAGAACAGTTTGGCTGTGTGTGATGTCCCTGCAGAATCAAACCCAAGCGAATCAACTACTTATGACCATTCCAGTTCAAAAGTATTTGACGATGGTCATAATTTCACTCTGGATGAACTAACTGAAAGCAGTTTGGCTGTTGGAGATGTGACCATAGACTCAGCATCTTTAGAAAATACAGAAGTTGTGTCTTCACCTACCTGCTACCTCCCAGAGCCTGAAACTAGTTTGGAGAATTCATTGGAGTTGCAAGCAAATCAAGTTGATATCAAGGATTTGCCAACAGATGGAGCAAGGGATCAGCCAGAAGCTGACTTAAAGCGTTCTCTGCAGGTTCAATCTGCTGAGCTTGATGTGGAAAGTTCTGAAGAAGATCAAGCGAGTATCATCTTATCAAGTCTTCAATCTGTACAGGCAGGGTCTCAAAACCACATGGATCTGGAGAAACCCAACCAGTTACCCTCTACGGAGCACATCAATCAGGAAGTATGCTGGGATGCTTCCCCGGAATCTCATCCTGAATATCTTCCAAGCCAAGCTTTAACATCAGAGTTCTTACCAGAATCATCAGGCCAGGAACTTCTTGTTACGAAGCAAACATTAGAATCATTAGATTCTACCCTTCCTAGATCAGTCCTGCCCCCTGAAGCTACCGTGGTCAATCTGGAAGACATGCCACCATTGCCACCTTTACCACCAATGCAATGGAGGATGGGAAAACAACACGCTTCCCTTTTTTCACAGAGAGAATTGGTTGGAGTTGGTCAGGATTCGTTGCTGCCAATACAGCCACCGGAATCTGATGAGAAAGCTCAATTTGATATGCCAGCACCACAGAGAGAGGTGCTGCCTCCCCAGAACCCATTTTTGCCTCTCACGTCTGAAGAAGGCGAGAAGTTCCAACATGTTTCTGAACCTGTAATGGGTAATGTGGTGCATCCTGCTCTGTATTCATTGCATTTACCAGCCATGGTTAACGATGCTAATCATCAGTACAATTTACCTGATTTAGGGGGGGCACAATTTTCAAACTCATTTTTATCGTTACCAGAGGCATCTCATGATGGGTCTGGAAGTAATCACTTAGCTTCAGAGGAAGAAAAAGTTAAGACTGGTTCAAATCCATTCACTGGACCAAGCTCGGAATGTATAACTTTTACACATGACCCTGAATCTTCTCATGGATCGATTATCCAGCCAGTGCAGCAGGTAACTCCGGAGACAGGTATTGAGCCTAAGATACTTCAACATTCACTGAAAAATTCAGAATCAGAACTAGGAGAACCTCTTTCCACATCTGTGACAGCACCACCAATGGTTGAGCAGCCTCAGCATAGTTTGCCAACATCAGAGGGAGAAATAGCATGGTCATCCCATAACTCTGCTGTAATGTCAGACTATGAAGGTGGAAGGTCTAATGGAGTTCCAGTTTCTAAGCTCCCTCGTCCTAGAAATCCCCTTATTGATGCTGTTGCTGCTCATGGCCAAAGCAAGTTGAGAAAAGTAACCGAACGAGTTCGGCCTCAGGTCGAACCTAAGGTAGATGAAAGAGATTCAATGCTGCAACAGATAAGAACTAAGTCATTCAACTTGAAGCCTGCAATGATGACAAGATCTTCAACGGTGACAAGACCCAGCATTCAGGGTCCGGCAACCAACTTGAGGGTTGCTGCTATCTTAGAGAAAGCAAATGCAATTCGCCAGGCACATGCAGGAAGTGATGAAGATGACGATGATGATAGTTGGAGTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1598

Amino Acids

174.47

Weight (kDa)

4.44

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1770, 2810
AatII	GACGTC	2 cut(s)	620, 2754
Acc36I	ACCTGC	3 cut(s)	3245, 3358, 4234
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	2 cut(s)	15, 2683
AccB7I	CCANNNNNTGG	4 cut(s)	1273, 2837, 3323, 4166
AccBSI	CCGCTC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	1182
AccIII	TCCGGA	3 cut(s)	49, 82, 4252
AciI	CCGC	7 cut(s)	113, 133, 204, 478, 580, 833, 2501
AcoI	YGGCCR	4 cut(s)	42, 105, 1719, 4519
AcuI	CTGAAG	9 cut(s)	1146, 1980, 1982, 2106, 2154, 3423, 3702, 3939, 4110
AcyI	GRCGYC	2 cut(s)	617, 2751
AdeI	CACNNNGTG	1 cut(s)	2009
AfaI	GTAC	7 cut(s)	17, 35, 59, 482, 1861, 3447, 4031
AflIII	ACRYGT	2 cut(s)	2318, 3940
AhdI	GACNNNNNGTC	1 cut(s)	2250
AhlI	ACTAGT	1 cut(s)	3260
AjiI	CACGTC	1 cut(s)	3915
AjnI	CCWGG	8 cut(s)	316, 657, 1627, 1690, 2647, 2830, 3609, 4737
AjuI	GAANNNNNNNTTGG	4 cut(s)	1746, 1778, 2770, 2802
AleI	CACNNNNGTG	2 cut(s)	896, 4334
Alw21I	GWGCWC	1 cut(s)	3510
Alw26I	GTCTC	7 cut(s)	366, 776, 1043, 1593, 2309, 3462, 4250
AlwNI	CAGNNNCTG	4 cut(s)	1691, 2888, 3254, 3347
Aor13HI	TCCGGA	3 cut(s)	49, 82, 4252
Asp700I	GAANNNNTTC	4 cut(s)	171, 1995, 3561, 4551
Asp718I	GGTACC	1 cut(s)	15
AspS9I	GGNCC	7 cut(s)	115, 416, 1143, 1724, 2550, 4169, 4682
AsuC2I	CCSGG	2 cut(s)	424, 3542
AsuNHI	GCTAGC	1 cut(s)	935
AvaII	GGWCC	5 cut(s)	416, 1143, 1724, 4169, 4682
AxyI	CCTNAGG	2 cut(s)	4560, 4572
BaeGI	GKGCMC	2 cut(s)	2721, 4057
BalI	TGGCCA	2 cut(s)	107, 4521
BamHI	GGATCC	2 cut(s)	575, 1552
BanI	GGYRCC	2 cut(s)	15, 2683
BauI	CACGAG	2 cut(s)	185, 210
BbsI	GAAGAC	4 cut(s)	1617, 3219, 3428, 3711
Bbv12I	GWGCWC	1 cut(s)	3510
BbvCI	CCTCAGC	2 cut(s)	2095, 4365
BceAI	ACGGC	3 cut(s)	52, 396, 2128
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	8 cut(s)	318, 659, 1629, 1692, 2649, 2832, 3611, 4739
BciVI	GTATCC	1 cut(s)	1654
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	424, 3542
BcoDI	GTCTC	7 cut(s)	366, 776, 1043, 1593, 2309, 3462, 4250
BcuI	ACTAGT	1 cut(s)	3260
BfaI	CTAG	9 cut(s)	224, 936, 1559, 1778, 2547, 3261, 3663, 4313, 4485
BfmI	CTRYAG	7 cut(s)	735, 894, 1676, 2187, 2226, 3066, 3365
BfuAI	ACCTGC	3 cut(s)	3245, 3358, 4234
BfuI	GTATCC	1 cut(s)	1654
BglI	GCCNNNNNGGC	1 cut(s)	123
BglII	AGATCT	2 cut(s)	2543, 4649
BlpI	GCTNAGC	1 cut(s)	3381
BmcAI	AGTACT	1 cut(s)	1861
Bme18I	GGWCC	5 cut(s)	416, 1143, 1724, 4169, 4682
BmeRI	GACNNNNNGTC	1 cut(s)	2250
BmgBI	CACGTC	1 cut(s)	3915
BmgT120I	GGNCC	7 cut(s)	115, 416, 1143, 1724, 2550, 4169, 4682
BmiI	GGNNCC	7 cut(s)	17, 202, 577, 1144, 1554, 2685, 4683
BmrI	ACTGGG	1 cut(s)	762
BmtI	GCTAGC	1 cut(s)	939
BmuI	ACTGGG	1 cut(s)	762
BoxI	GACNNNNGTC	1 cut(s)	3129
BpiI	GAAGAC	4 cut(s)	1617, 3219, 3428, 3711
Bpu10I	CCTNAGC	2 cut(s)	2095, 4365
Bpu1102I	GCTNAGC	1 cut(s)	3381
BpuEI	CTTGAG	3 cut(s)	859, 2941, 4717
BpuMI	CCSGG	2 cut(s)	424, 3542
Bsa29I	ATCGAT	1 cut(s)	4223
BsaBI	GATNNNNATC	3 cut(s)	330, 1311, 4020
BsaHI	GRCGYC	2 cut(s)	617, 2751
BsaI	GGTCTC	1 cut(s)	3462
BsaWI	WCCGGW	4 cut(s)	49, 82, 3829, 4252
BsaXI	ACNNNNNCTCC	2 cut(s)	4449, 4479
Bse21I	CCTNAGG	2 cut(s)	4560, 4572
Bse3DI	GCAATG	4 cut(s)	3716, 3746, 3989, 4644
Bse8I	GATNNNNATC	3 cut(s)	330, 1311, 4020
BseAI	TCCGGA	3 cut(s)	49, 82, 4252
BseBI	CCWGG	8 cut(s)	318, 659, 1629, 1692, 2649, 2832, 3611, 4739
BseCI	ATCGAT	1 cut(s)	4223
BseJI	GATNNNNATC	3 cut(s)	330, 1311, 4020
BseMI	GCAATG	4 cut(s)	3716, 3746, 3989, 4644
BseRI	GAGGAG	2 cut(s)	677, 1351
BseSI	GKGCMC	2 cut(s)	2721, 4057
BseYI	CCCAGC	4 cut(s)	139, 461, 3528, 4670
BsgI	GTGCAG	3 cut(s)	2145, 2184, 4259
BshNI	GGYRCC	2 cut(s)	15, 2683
BshVI	ATCGAT	1 cut(s)	4223
BsiHKAI	GWGCWC	1 cut(s)	3510
BsiSI	CCGG	8 cut(s)	50, 83, 424, 1722, 3542, 3830, 4253, 4685
BslFI	GGGAC	3 cut(s)	901, 1811, 3047
BsmAI	GTCTC	7 cut(s)	366, 776, 1043, 1593, 2309, 3462, 4250
BsmFI	GGGAC	3 cut(s)	901, 1811, 3047
BsmI	GAATGC	2 cut(s)	413, 4674
Bso31I	GGTCTC	1 cut(s)	3462
Bsp1286I	GDGCHC	3 cut(s)	2721, 3510, 4057
Bsp13I	TCCGGA	3 cut(s)	49, 82, 4252
Bsp1407I	TGTACA	1 cut(s)	3445
Bsp1720I	GCTNAGC	1 cut(s)	3381
Bsp19I	CCATGG	3 cut(s)	108, 2553, 4005
BspACI	CCGC	7 cut(s)	113, 133, 204, 478, 580, 833, 2501
BspDI	ATCGAT	1 cut(s)	4223
BspEI	TCCGGA	3 cut(s)	49, 82, 4252
BspHI	TCATGA	3 cut(s)	175, 2974, 4096
BspLI	GGNNCC	7 cut(s)	17, 202, 577, 1144, 1554, 2685, 4683
BspMAI	CTGCAG	4 cut(s)	739, 2191, 3070, 3369
BspMI	ACCTGC	3 cut(s)	3245, 3358, 4234
BspOI	GCTAGC	1 cut(s)	939
BspQI	GCTCTTC	4 cut(s)	96, 2076, 2175, 2214
BspT107I	GGYRCC	2 cut(s)	15, 2683
BspTNI	GGTCTC	1 cut(s)	3462
BsrBI	CCGCTC	1 cut(s)	835
BsrDI	GCAATG	4 cut(s)	3716, 3746, 3989, 4644
BsrGI	TGTACA	1 cut(s)	3445
BssNI	GRCGYC	2 cut(s)	617, 2751
BssSI	CACGAG	2 cut(s)	185, 210
BssT1I	CCWWGG	3 cut(s)	108, 2553, 4005
Bst2BI	CACGAG	2 cut(s)	185, 210
Bst2UI	CCWGG	8 cut(s)	318, 659, 1629, 1692, 2649, 2832, 3611, 4739
Bst6I	CTCTTC	6 cut(s)	96, 2076, 2175, 2214, 2532, 2832
BstACI	GRCGYC	2 cut(s)	617, 2751
BstAPI	GCANNNNNTGC	1 cut(s)	4375
BstAUI	TGTACA	1 cut(s)	3445
BstC8I	GCNNGC	9 cut(s)	115, 937, 1581, 1600, 2187, 2280, 3288, 3864, 4635
BstDSI	CCRYGG	7 cut(s)	108, 217, 367, 412, 2553, 3690, 4005
BstENI	CCTNNNNNAGG	2 cut(s)	1076, 4044
BstMAI	GTCTC	7 cut(s)	366, 776, 1043, 1593, 2309, 3462, 4250
BstNI	CCWGG	8 cut(s)	318, 659, 1629, 1692, 2649, 2832, 3611, 4739
BstNSI	RCATGY	8 cut(s)	471, 626, 1583, 1602, 2322, 3712, 3944, 4748
BstPAI	GACNNNNGTC	1 cut(s)	3129
BstSFI	CTRYAG	7 cut(s)	735, 894, 1676, 2187, 2226, 3066, 3365
BstSLI	GKGCMC	2 cut(s)	2721, 4057
BstV2I	GAAGAC	4 cut(s)	1617, 3219, 3428, 3711
BstX2I	RGATCY	7 cut(s)	575, 731, 1552, 2543, 2822, 3472, 4649
BstXI	CCANNNNNNTGG	2 cut(s)	2429, 3741
BstYI	RGATCY	7 cut(s)	575, 731, 1552, 2543, 2822, 3472, 4649
Bsu15I	ATCGAT	1 cut(s)	4223
Bsu36I	CCTNAGG	2 cut(s)	4560, 4572
BsuI	GTATCC	1 cut(s)	1654
BsuTUI	ATCGAT	1 cut(s)	4223
BtgI	CCRYGG	7 cut(s)	108, 217, 367, 412, 2553, 3690, 4005
BtrI	CACGTC	1 cut(s)	3915
BtsI	GCAGTG	1 cut(s)	2196
BveI	ACCTGC	3 cut(s)	3245, 3358, 4234
Cac8I	GCNNGC	9 cut(s)	115, 937, 1581, 1600, 2187, 2280, 3288, 3864, 4635
CaiI	CAGNNNCTG	4 cut(s)	1691, 2888, 3254, 3347
CciI	TCATGA	3 cut(s)	175, 2974, 4096
Cfr13I	GGNCC	7 cut(s)	115, 416, 1143, 1724, 2550, 4169, 4682
ClaI	ATCGAT	1 cut(s)	4223
CseI	GACGC	1 cut(s)	2204
Csp6I	GTAC	7 cut(s)	16, 34, 58, 481, 1860, 3446, 4030
CspCI	CAANNNNNGTGG	4 cut(s)	819, 854, 1419, 1454
CviQI	GTAC	7 cut(s)	16, 34, 58, 481, 1860, 3446, 4030
DraI	TTTAAA	1 cut(s)	502
DraIII	CACNNNGTG	1 cut(s)	2009
DriI	GACNNNNNGTC	1 cut(s)	2250
EaeI	YGGCCR	4 cut(s)	42, 105, 1719, 4519
Eam1104I	CTCTTC	6 cut(s)	96, 2076, 2175, 2214, 2532, 2832
Eam1105I	GACNNNNNGTC	1 cut(s)	2250
EarI	CTCTTC	6 cut(s)	96, 2076, 2175, 2214, 2532, 2832
Eco130I	CCWWGG	3 cut(s)	108, 2553, 4005
Eco31I	GGTCTC	1 cut(s)	3462
Eco32I	GATATC	2 cut(s)	2608, 3304
Eco47I	GGWCC	5 cut(s)	416, 1143, 1724, 4169, 4682
Eco57I	CTGAAG	9 cut(s)	1146, 1980, 1982, 2106, 2154, 3423, 3702, 3939, 4110
Eco81I	CCTNAGG	2 cut(s)	4560, 4572
EcoNI	CCTNNNNNAGG	2 cut(s)	1076, 4044
EcoRI	GAATTC	5 cut(s)	1384, 1447, 1481, 1544, 3271
EcoRII	CCWGG	8 cut(s)	316, 657, 1627, 1690, 2647, 2830, 3609, 4737
EcoRV	GATATC	2 cut(s)	2608, 3304
EcoT14I	CCWWGG	3 cut(s)	108, 2553, 4005
EcoT22I	ATGCAT	2 cut(s)	1600, 1604
ErhI	CCWWGG	3 cut(s)	108, 2553, 4005
FalI	AAGNNNNNCTT	4 cut(s)	2073, 2105, 3559, 3591
FaqI	GGGAC	3 cut(s)	901, 1811, 3047
FauI	CCCGC	3 cut(s)	106, 587, 2494
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	1182
FspBI	CTAG	9 cut(s)	224, 936, 1559, 1778, 2547, 3261, 3663, 4313, 4485
GsaI	CCCAGC	4 cut(s)	143, 465, 3532, 4674
HapII	CCGG	8 cut(s)	50, 83, 424, 1722, 3542, 3830, 4253, 4685
HgaI	GACGC	1 cut(s)	2204
Hin1I	GRCGYC	2 cut(s)	617, 2751
HincII	GTYRAC	4 cut(s)	9, 742, 2128, 4012
HindII	GTYRAC	4 cut(s)	9, 742, 2128, 4012
HindIII	AAGCTT	2 cut(s)	1899, 3573
HpaI	GTTAAC	1 cut(s)	4012
HpaII	CCGG	8 cut(s)	50, 83, 424, 1722, 3542, 3830, 4253, 4685
Hpy166II	GTNNAC	8 cut(s)	9, 483, 742, 1146, 1183, 2128, 2194, 4012
Hpy8I	GTNNAC	8 cut(s)	9, 483, 742, 1146, 1183, 2128, 2194, 4012
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	9 cut(s)	92, 265, 270, 1082, 1121, 3668, 3917, 4433, 4440
HpyCH4IV	ACGT	5 cut(s)	617, 2059, 2469, 2751, 3914
HpySE526I	ACGT	5 cut(s)	617, 2059, 2469, 2751, 3914
Hsp92I	GRCGYC	2 cut(s)	617, 2751
Kpn2I	TCCGGA	3 cut(s)	49, 82, 4252
KpnI	GGTACC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	4012
LguI	GCTCTTC	4 cut(s)	96, 2076, 2175, 2214
MaeI	CTAG	9 cut(s)	224, 936, 1559, 1778, 2547, 3261, 3663, 4313, 4485
MaeII	ACGT	5 cut(s)	617, 2059, 2469, 2751, 3914
MbiI	CCGCTC	1 cut(s)	835
MfeI	CAATTG	2 cut(s)	264, 1350
MflI	RGATCY	7 cut(s)	575, 731, 1552, 2543, 2822, 3472, 4649
MhlI	GDGCHC	3 cut(s)	2721, 3510, 4057
MlsI	TGGCCA	2 cut(s)	107, 4521
MluNI	TGGCCA	2 cut(s)	107, 4521
MlyI	GAGTC	7 cut(s)	737, 778, 910, 1286, 2215, 2891, 3188
MmeI	TCCRAC	9 cut(s)	262, 336, 1092, 1554, 2663, 3157, 3772, 3961, 4760
Mox20I	TGGCCA	2 cut(s)	107, 4521
Mph1103I	ATGCAT	2 cut(s)	1600, 1604
MroI	TCCGGA	3 cut(s)	49, 82, 4252
MroXI	GAANNNNTTC	4 cut(s)	171, 1995, 3561, 4551
MscI	TGGCCA	2 cut(s)	107, 4521
MslI	CAYNNNNRTG	5 cut(s)	726, 896, 1459, 2592, 4334
Msp20I	TGGCCA	2 cut(s)	107, 4521
MspA1I	CMGCKG	2 cut(s)	139, 582
MspI	CCGG	8 cut(s)	50, 83, 424, 1722, 3542, 3830, 4253, 4685
MunI	CAATTG	2 cut(s)	264, 1350
Mva1269I	GAATGC	2 cut(s)	413, 4674
MvaI	CCWGG	8 cut(s)	318, 659, 1629, 1692, 2649, 2832, 3611, 4739
NciI	CCSGG	2 cut(s)	424, 3542
NcoI	CCATGG	3 cut(s)	108, 2553, 4005
NheI	GCTAGC	1 cut(s)	935
NlaIV	GGNNCC	7 cut(s)	17, 202, 577, 1144, 1554, 2685, 4683
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	7 cut(s)	618, 1795, 2849, 2890, 3184, 4336, 4660
NsiI	ATGCAT	2 cut(s)	1600, 1604
NspI	RCATGY	8 cut(s)	471, 626, 1583, 1602, 2322, 3712, 3944, 4748
OliI	CACNNNNGTG	2 cut(s)	896, 4334
PaeI	GCATGC	2 cut(s)	1583, 1602
PagI	TCATGA	3 cut(s)	175, 2974, 4096
PasI	CCCWGGG	1 cut(s)	317
PciI	ACATGT	2 cut(s)	2318, 3940
PciSI	GCTCTTC	4 cut(s)	96, 2076, 2175, 2214
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 66
PctI	GAATGC	2 cut(s)	413, 4674
PdmI	GAANNNNTTC	4 cut(s)	171, 1995, 3561, 4551
PflMI	CCANNNNNTGG	4 cut(s)	1273, 2837, 3323, 4166
PfoI	TCCNGGA	3 cut(s)	657, 1627, 2830
PleI	GAGTC	7 cut(s)	737, 778, 909, 1286, 2214, 2891, 3188
PpsI	GAGTC	7 cut(s)	737, 778, 909, 1286, 2214, 2891, 3188
PscI	ACATGT	2 cut(s)	2318, 3940
PshAI	GACNNNNGTC	1 cut(s)	3129
PsiI	TTATAA	2 cut(s)	1770, 2810
Psp6I	CCWGG	8 cut(s)	316, 657, 1627, 1690, 2647, 2830, 3609, 4737
PspFI	CCCAGC	4 cut(s)	139, 461, 3528, 4670
PspGI	CCWGG	8 cut(s)	316, 657, 1627, 1690, 2647, 2830, 3609, 4737
PspN4I	GGNNCC	7 cut(s)	17, 202, 577, 1144, 1554, 2685, 4683
PspPI	GGNCC	7 cut(s)	115, 416, 1143, 1724, 2550, 4169, 4682
PstI	CTGCAG	4 cut(s)	739, 2191, 3070, 3369
PstNI	CAGNNNCTG	4 cut(s)	1691, 2888, 3254, 3347
PsuI	RGATCY	7 cut(s)	575, 731, 1552, 2543, 2822, 3472, 4649
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	7 cut(s)	17, 35, 59, 482, 1861, 3447, 4031
RsaNI	GTAC	7 cut(s)	16, 34, 58, 481, 1860, 3446, 4030
RseI	CAYNNNNRTG	5 cut(s)	726, 896, 1459, 2592, 4334
SapI	GCTCTTC	4 cut(s)	96, 2076, 2175, 2214
Sau96I	GGNCC	7 cut(s)	115, 416, 1143, 1724, 2550, 4169, 4682
ScaI	AGTACT	1 cut(s)	1861
SchI	GAGTC	7 cut(s)	737, 778, 910, 1286, 2215, 2891, 3188
SduI	GDGCHC	3 cut(s)	2721, 3510, 4057
SfcI	CTRYAG	7 cut(s)	735, 894, 1676, 2187, 2226, 3066, 3365
SinI	GGWCC	5 cut(s)	416, 1143, 1724, 4169, 4682
SmiMI	CAYNNNNRTG	5 cut(s)	726, 896, 1459, 2592, 4334
SmlI	CTYRAG	3 cut(s)	838, 2956, 4696
SmoI	CTYRAG	3 cut(s)	838, 2956, 4696
SpeI	ACTAGT	1 cut(s)	3260
SphI	GCATGC	2 cut(s)	1583, 1602
SsiI	CCGC	7 cut(s)	113, 133, 204, 478, 580, 833, 2501
SspI	AATATT	2 cut(s)	171, 1978
SspMI	CTAG	9 cut(s)	224, 936, 1559, 1778, 2547, 3261, 3663, 4313, 4485
StyI	CCWWGG	3 cut(s)	108, 2553, 4005
TaiI	ACGT	5 cut(s)	620, 2062, 2472, 2754, 3917
TaqI	TCGA	4 cut(s)	507, 1330, 4223, 4566
TatI	WGTACW	3 cut(s)	1859, 3445, 4029
TauI	GCSGC	1 cut(s)	136
TseFI	GTSAC	7 cut(s)	618, 1795, 2849, 2890, 3184, 4336, 4660
Tsp45I	GTSAC	7 cut(s)	618, 1795, 2849, 2890, 3184, 4336, 4660
TspGWI	ACGGA	3 cut(s)	75, 2179, 3518
Van91I	CCANNNNNTGG	4 cut(s)	1273, 2837, 3323, 4166
VpaK11BI	GGWCC	5 cut(s)	416, 1143, 1724, 4169, 4682
XagI	CCTNNNNNAGG	2 cut(s)	1076, 4044
XceI	RCATGY	8 cut(s)	471, 626, 1583, 1602, 2322, 3712, 3944, 4748
XcmI	CCANNNNNNNNNTGG	2 cut(s)	324, 3738
XmiI	GTMKAC	1 cut(s)	1182
XmnI	GAANNNNTTC	4 cut(s)	171, 1995, 3561, 4551
XspI	CTAG	9 cut(s)	224, 936, 1559, 1778, 2547, 3261, 3663, 4313, 4485
ZraI	GACGTC	2 cut(s)	618, 2752
ZrmI	AGTACT	1 cut(s)	1861
Zsp2I	ATGCAT	2 cut(s)	1600, 1604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.