Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

9079556 .. 9087388

Gene Structure 7833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5025 bp

ATGCCGTTGACGCGGTACCAGATACGGAACGAGTACGGCTTGGCCGATCCGGAACTCTACAAAGCCGCCGATAGAGATGATCCGGAGGCCTTGCTCGAAGGCGTCGCCATGGCTGGACTCGTCGGCGTCTTGCGTCAGCTTGGCGACCTTGCCGAGTTTGCTGCTGAAATATTTCATGACTTGCATGAAGAAGTAATGGCAACCGCCACAAGAGGCCACGGTCTAATGGTTCGCGTCCAACAGCTTGAAGCAGATTTTCCTTCAATTGAGAAGGCACTTCTAGCTCAAACGAATCATTCGCCATTTTTTTCAAATACAGGTGTTGACTGGCATCCTAATCTGCGTTGCGAACAGAATCTGATCACCCGTGGAGACTTACCTCGCTTTGTAATGGATTCTTATGAAGAATGCCGTGCTCCTCCTCGGTTATTCCTTCTGGACAAGTTTGATGTTGCTGGGGCTGGGGCATGTTTAAAGCGATACACTGATCCATCATTCTTTAAAGTGGAATCGGCATACTCATTAGCACCAGCAGATATGCAGAGAGAAAGGAAGATCCGTAAAGTAAAGAAGAAAGGATCACGCTGGAGGAATGGTGAAACCCCAGAAGTTTTACTGCCATCACATGCCAAACTGCATGAGTTATTTCTGGAGGAGCGCATTCAGAATGGTTACAGTGACCCTGCTCGTCGTGTGAAATTAAAGAAAAGACATTTGAATGGACCTGCAGTTGACTCAAAAACCAAGAAAAGTTACATGGATAAATTTATGGAGACTCATTCACCAGAGCGTAAACTGGTTTGTGTAACTTCTGTTACTTCCCCGCTCTTGAATTTGAGCTCAGATAATAAGAATGAGTCGGGGCTTAGAATACTTGACATTAGTATTGTGAGTCCTGCAGAAAAGTCTCCGGAAAGGAGTAGTGCTAGTTCTTCAACTACTAAACACCAAGAAGTCATATCAAAACAATCAATGGATGGTTTGAATGGGGGCTCTTTCTATGGAGAACCAAATTCTGATGGTGGAAGTGACAACAGCTATTCCAACCTTCAAATGGTTGCAGTTGAGAAGGAATTAGAAGTTGATGGAGAAGACAAAACTGAAGGCAGTGTAGAGGGATACAATTCTGATGATTTGCCCAGTGAGGTAGATAATTACGTGGATGCTCTTGCTACTATGGATTCAGAAGTGGATACGGACAATGATAGCAGAGCTAAGAGCAATCTAGGCTTAATGAAGGTTGACAAATGCAGGACAGACTCTGATGCAAATGAGGAGGAACATGTAGAGCTTCAAGCTCAATCTTTGGATTCTCAATCAAATGAGAACTCTTGTTGGTCAGATGACTGGAATAATTCATTCATAAGAGATAGAGCCAGTCTGCACTCTGACACTTTAAGCAATTTGGTTGAGAATACACCTTCAGAGTGTAATGGAGCAGCTAAAGAATTACCATCCACTGAAGCTTGTGGAGCTGAGGATACATGTATTGAGGAAACCATAAACCCTGATAGTGGAGATATATCATGCAATAGGATGGTTGGGGAAATGAGTCCTACACAACCACATCCAGACCATGGAGCAAAGTCACCTGTGGCTTCATATGTGGGGCCTTTAATAGATGAAACATCCTCCTATAAAATTAAATTTGGTTCTGAATCATTTGACATCAGAGAAAATGGGACAAATCTGGATCATTTCATGACAGCTGTTCCTGATGGTTCTTCCCAGGCTAAGGATGAGTTCACAAATACTTCTCCGACGCTTCCTCTAGTTGAAGCAGATAAAGAAGATTTAGGTGCCACTTCTGATGATTTACCGCATTTGAAAAATGTTGAAGAATTGGCTTCTGTAAATCATAGCAGCAATGATTCTGTGAATAAAGTGTTTCAGACACAATGTGCTGATGAAGATGCTGCGGGAAGCTTCGCCAGTAGAAAGATTGATTCACCACTTTCAAGTATTCCATCTACAGAAGAGCAGCTCTTTCCCTCAGCAATGAAAGAAATACAAACATCTTCAGGTTCTACATTACTGCCTCATAATTCAGATGTTGCAAAGCCTGTCAACAGGGTTTCTGTGGTGGATGATCCTGTTAAACCAACTGCATTCAAATCTGGAGTTATACCATGGAGACGTATCTCAAGAGAGTCATATCCTGGAGGGGATGCTCCAAAGACACATGGCCTAATAGAGCAGAAGGGTGCTCCACAGACACATGTCCTAAAAGAGCAGAAGGATGCTCCACAGACACATGTCTTAATGGACCAGCAAATCTCCGTTTTAGATGAGGATATATCCCACTATGAAGAGAAATTCAAAACTGAAGAGAGATCTAGGACGGTGGATGATGAGGAGATAGGCTTATTCACCAGCAATGCTGATTCAGAGGGAGGAGATTCTGTTTCTATAGAACTTCCATCAAACTCTCCAACTTATTCAGGCCATGGGGATCATGTACCTTCAGCCAGTATAGAACCTGCAACAGTTCATGTAGAAGATGTGTGTGCGTCCTCTGCTGCTGTTACCAAATCTGATGATGTCAATGATTTTATTGATACATCTCCAGAGGAAGGAGATTCTGTTTCTGTAGAACTTCCATCGAACCGTCCAACATATTCAGGCCTTGGGAATCTTGTAGTTTCAGACAATATAGTACTTGAAACAGTTCATGTAGAAGATCTTGCTGTATCCTCTCCTGCTGTTGCCAAATCTGATGATGTCAATGATCTTGATACATCTCCAGACGCAAATTGTTCTCCACCATTGAATTTTATGAATTTGCATGAATCTCTTCCTGACTTCAGGGATTCCCATCTGAAAGAATCTGAAATGGATGATGTAGCTTCTCCAAAATTCGTGTCAGACTCAGAAATGCAAAAGGAAGCAAGTAAAGTTGAAGTTGTTTCGCCAGATTCAGATTCAGACCCAAGCAAATCAGTTGCTTATAATCCTTCCAGTTCAAAGGTATTTGATGATGATCATAACTTGTCCCTGGATGAGCAGAATGAACACGGTGTGACTGTCTATGATGACCCCACAGCCTCAACATCTTTGGAAATGAGCAATCAGGAGTCAGAGTTGCAATCTCTGGATCAGACTTGTGGAGAGTATGCTGTGTCATCATCTACCTCTGCCCTTCCAGAACCTGACCTCCAAGAAGCTGAAACGAATTTAGACATTTTGTCGGAGTTGCAAGCTAATCAAGTTCATATGGAAAATTTGGAAAGAGACGGAGCAAGTGGTCAGCTAGAAGCTTCCTTAGAACGGTTGCCGGAGTTTCAGTCTGATCAACTGGGTATGGAAGATTCACAAGAAGATCAAGCTAGTACTAACTCATTAAGTTCTCAATATGCACAGATTGGATTTCCAAATCACCCAGATAAGGAGATATCCAAACTACCATCCATGGAAGATTCACAAGAAGATCAAGCTAGTACTAACTCATTAAGTTCTCAATATGCACAGATTGGGTTTCCAAATCACCCAGATAAGGAGATATCCAAACTACCGCCCATGGATCACACCAATCAAGAGACATGCTTGAATGCTTCCTCTGAATCTTTTCCGGAAGACCTTCCAAGTCAACCTTCAACTTCAGAGTTCTTTACAGAATCAGCAGGCCAGGAAACTGATCTTTTAAAGCCAAAAATGGAACCATTAGAGTCTATTCTTCCTAACTTTGTCCGGCCACCTGTGGTCAATCTTGAGGACACGCCACCGTTGCCACCTCTACCACCTATGCAATGGAGGTTAGGAAAGATGCAACATGCTTCGCCAGCCTCACATAGAGATTTGGGAGGTGATAGCAATGATTCATTCTTGCCAATGCAGTCACTGAAAGCTGATGAGAAAGCTCAATTTGATCTACCAGCACCGCAGAGAGAGCTACTGCAGCCTCAACACCCATTTTTATCTCTCACAGCAGAAGATATGAAGTCCCAACCTGTTTTTGGACCTTTGGTGGGCCATGTCGTGCCTCCTGCACAATTTTTGCAAGAACCAACTGATAATGATTCCAATCATCAATACAATTTTCCTGATTTAGGGGGAATGCAACTCTCAAGCCCATTCATACAACTATCGAAGGTCTCTGGTGACAGCTCTGGACACAATGACATTGATTTAGAGGGAGAGAAGGGTCTGTCTAGTTCGAAGCCAATCACAGTTCCAGGCACTGAATGTACAACATCTGGACAAGACCCTGTATTTTCTCATGGGGAAATTGTCCATCCCCAACAGTTGATACCGGAAACAGGTTTAGAGCTTGAGGTACTTAAACAATCATTCGATAATTCAGAATTGGAACAAGCTGGACCCCTTGCCACATCTGTGACAGCACCAACCATGGAAGATGAGCAGCCTCAGCATAGTTTGCCAACAACAGAGGGAGGAAAGGTTCAGTCTACTACAAAGCCATTAACAGTACCAGGAGCTGAATGCACAACTTCTAGACATGACCCTATCCAACCTCCACAACAATTAACGAAGGAATCAGGTCTAGAGCCTGAGGATCTTTGCTATTCATCGAAAAACTCAGAAAGGGAACAAGAAAAGCCTCTTGCTACATCACTGACAGCGACAACTACAGTAGATGAGAAGCCTCAGCATAGTTTGCCAACATCAGAGGGAGAAACAGCATGGTCATCAAATACTTCTGATGTAATGCCGGACTCAGAATTTGGGAAGTCTAATGGAACAGTGAATAAGATCCCTCGTCCTAGAAATCCCCTTATTGATGCTGTCACTGCTCATGGCCAAAGCAAGTTGAAAAAGGCAAGTGAACGAATTCAGCCTCAGATTGAACCAAAGGTAGACGAAAGAGATTTATTTCTGCAACAGATAAGAACCAAGTCCTTCAACCTGAAGCCTGCAACTGTGACAAGATCCACACCACGACCCAACATTCAGGGTCATAATCCCAACTTGAAGGTCATCTCTCTCTTAGAGAAAAAAGCAAGTGCAATCCGCCAGGCATTTGTGGGAAGTGATGAAGATGATGATGAGAGTTGGAGTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1674

Amino Acids

183.09

Weight (kDa)

4.53

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2949
Acc36I	ACCTGC	2 cut(s)	733, 2488
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	2 cut(s)	15, 1799
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	1 cut(s)	826
AccI	GTMKAC	2 cut(s)	4406, 4815
AccII	CGCG	2 cut(s)	13, 234
AccIII	TCCGGA	4 cut(s)	49, 82, 910, 3568
AciI	CCGC	9 cut(s)	13, 66, 204, 824, 1820, 1919, 3512, 3878, 4969
AcoI	YGGCCR	3 cut(s)	42, 3689, 4756
AcuI	CTGAAG	9 cut(s)	1122, 1407, 1482, 2004, 2346, 2448, 2788, 3582, 4886
AcyI	GRCGYC	2 cut(s)	102, 126
AdeI	CACNNNGTG	2 cut(s)	1901, 3019
AfaI	GTAC	9 cut(s)	17, 35, 2460, 2658, 3331, 3439, 4186, 4275, 4428
AflIII	ACRYGT	4 cut(s)	1282, 1484, 2218, 2254
AhdI	GACNNNNNGTC	1 cut(s)	3184
AjnI	CCWGG	7 cut(s)	1728, 2158, 2994, 3624, 4171, 4429, 4971
AjuI	GAANNNNNNNTTGG	2 cut(s)	3574, 3606
AleI	CACNNNNGTG	1 cut(s)	4331
AloI	GAACNNNNNNTCC	4 cut(s)	3138, 3170, 4383, 4415
Alw21I	GWGCWC	3 cut(s)	418, 842, 2209
Alw26I	GTCTC	7 cut(s)	366, 767, 912, 2128, 3225, 3530, 4096
AlwNI	CAGNNNCTG	6 cut(s)	358, 1262, 3149, 3838, 4178, 4436
Aor13HI	TCCGGA	4 cut(s)	49, 82, 910, 3568
ApeKI	GCWGC	8 cut(s)	161, 1439, 1863, 1916, 1981, 2519, 3895, 4360
ArsI	GACNNNNNNTTYG	4 cut(s)	2846, 2878, 4664, 4696
Asp700I	GAANNNNTTC	6 cut(s)	171, 2667, 2793, 3564, 3576, 4788
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	6 cut(s)	722, 1610, 2266, 3956, 3967, 4316
AsuII	TTCGAA	1 cut(s)	4154
AvaII	GGWCC	4 cut(s)	722, 2266, 3956, 4316
AxyI	CCTNAGG	1 cut(s)	4509
BalI	TGGCCA	1 cut(s)	4758
BanI	GGYRCC	2 cut(s)	15, 1799
BanII	GRGCYC	2 cut(s)	842, 995
BbsI	GAAGAC	2 cut(s)	1098, 3579
Bbv12I	GWGCWC	3 cut(s)	418, 842, 2209
BbvCI	CCTCAGC	4 cut(s)	1476, 1993, 4365, 4605
BbvI	GCAGC	8 cut(s)	148, 1451, 1875, 1903, 1993, 2506, 3907, 4372
BceAI	ACGGC	2 cut(s)	52, 396
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
BciVI	GTATCC	4 cut(s)	1112, 1186, 1474, 2701
BclI	TGATCA	3 cut(s)	360, 2980, 3289
BcoDI	GTCTC	7 cut(s)	366, 767, 912, 2128, 3225, 3530, 4096
BfmI	CTRYAG	7 cut(s)	726, 897, 1971, 2409, 2589, 3893, 4587
BfuAI	ACCTGC	2 cut(s)	733, 2488
BfuI	GTATCC	4 cut(s)	1112, 1186, 1474, 2701
BglII	AGATCT	2 cut(s)	2333, 2680
BisI	GCNGC	9 cut(s)	66, 162, 1440, 1864, 1917, 1982, 2520, 3896, 4361
BlsI	GCNGC	9 cut(s)	67, 163, 1441, 1865, 1918, 1983, 2521, 3897, 4362
BmcAI	AGTACT	3 cut(s)	2658, 3331, 3439
Bme1390I	CCNGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
Bme18I	GGWCC	4 cut(s)	722, 2266, 3956, 4316
BmeRI	GACNNNNNGTC	1 cut(s)	3184
BmgT120I	GGNCC	6 cut(s)	722, 1610, 2266, 3956, 3967, 4316
BmiI	GGNNCC	5 cut(s)	17, 1611, 1801, 3657, 4318
BmrFI	CCNGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
BmrI	ACTGGG	2 cut(s)	1134, 3305
BmsI	GCATC	8 cut(s)	340, 1153, 1255, 1903, 2158, 2230, 3753, 4729
BmuI	ACTGGG	2 cut(s)	1134, 3305
BoxI	GACNNNNGTC	2 cut(s)	2219, 2255
BpiI	GAAGAC	2 cut(s)	1098, 3579
BpmI	CTGGAG	6 cut(s)	607, 671, 2139, 2181, 2550, 2727
Bpu10I	CCTNAGC	5 cut(s)	1476, 1734, 1993, 4365, 4605
Bpu14I	TTCGAA	1 cut(s)	4154
BpuEI	CTTGAG	4 cut(s)	2128, 3728, 4048, 4289
BsaAI	YACGTR	1 cut(s)	1159
BsaBI	GATNNNNATC	3 cut(s)	2814, 2979, 4020
BsaHI	GRCGYC	2 cut(s)	102, 126
BsaI	GGTCTC	1 cut(s)	4096
BsaWI	WCCGGW	5 cut(s)	49, 82, 910, 3568, 4249
Bse1I	ACTGG	9 cut(s)	332, 801, 1140, 1352, 1377, 1932, 2469, 2958, 3300
Bse21I	CCTNAGG	1 cut(s)	4509
Bse3DI	GCAATG	5 cut(s)	1873, 2004, 2383, 3752, 3817
Bse8I	GATNNNNATC	3 cut(s)	2814, 2979, 4020
BseAI	TCCGGA	4 cut(s)	49, 82, 910, 3568
BseBI	CCWGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
BseJI	GATNNNNATC	3 cut(s)	2814, 2979, 4020
BseMI	GCAATG	5 cut(s)	1873, 2004, 2383, 3752, 3817
BseNI	ACTGG	9 cut(s)	332, 801, 1140, 1352, 1377, 1932, 2469, 2958, 3300
BseRI	GAGGAG	6 cut(s)	408, 411, 668, 1289, 2369, 2409
BseXI	GCAGC	8 cut(s)	148, 1451, 1875, 1903, 1993, 2506, 3907, 4372
BseYI	CCCAGC	2 cut(s)	455, 461
BsgI	GTGCAG	2 cut(s)	1367, 3969
Bsh1236I	CGCG	2 cut(s)	13, 234
BshNI	GGYRCC	2 cut(s)	15, 1799
BsiHKAI	GWGCWC	3 cut(s)	418, 842, 2209
BsiSI	CCGG	8 cut(s)	50, 83, 911, 3275, 3569, 3688, 4250, 4670
BslFI	GGGAC	3 cut(s)	1696, 2977, 3925
BsmAI	GTCTC	7 cut(s)	366, 767, 912, 2128, 3225, 3530, 4096
BsmBI	CGTCTC	2 cut(s)	2128, 3225
BsmFI	GGGAC	3 cut(s)	1696, 2977, 3925
BsmI	GAATGC	6 cut(s)	413, 660, 2108, 3553, 4059, 4445
Bso31I	GGTCTC	1 cut(s)	4096
Bsp119I	TTCGAA	1 cut(s)	4154
Bsp1286I	GDGCHC	4 cut(s)	418, 842, 995, 2209
Bsp13I	TCCGGA	4 cut(s)	49, 82, 910, 3568
Bsp1407I	TGTACA	1 cut(s)	4184
Bsp19I	CCATGG	7 cut(s)	108, 1576, 2129, 2446, 3408, 3516, 4347
BspACI	CCGC	9 cut(s)	13, 66, 204, 824, 1820, 1919, 3512, 3878, 4969
BspEI	TCCGGA	4 cut(s)	49, 82, 910, 3568
BspFNI	CGCG	2 cut(s)	13, 234
BspHI	TCATGA	2 cut(s)	175, 1701
BspLI	GGNNCC	5 cut(s)	17, 1611, 1801, 3657, 4318
BspMAI	CTGCAG	3 cut(s)	730, 901, 3897
BspMI	ACCTGC	2 cut(s)	733, 2488
BspQI	GCTCTTC	1 cut(s)	1971
BspT104I	TTCGAA	1 cut(s)	4154
BspT107I	GGYRCC	2 cut(s)	15, 1799
BspTNI	GGTCTC	1 cut(s)	4096
BsrBI	CCGCTC	1 cut(s)	826
BsrDI	GCAATG	5 cut(s)	1873, 2004, 2383, 3752, 3817
BsrGI	TGTACA	1 cut(s)	4184
BsrI	ACTGG	9 cut(s)	332, 801, 1140, 1352, 1377, 1932, 2469, 2958, 3300
BssNI	GRCGYC	2 cut(s)	102, 126
BssT1I	CCWWGG	8 cut(s)	108, 1576, 2129, 2446, 2626, 3408, 3516, 4347
Bst2UI	CCWGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
Bst6I	CTCTTC	4 cut(s)	1971, 2304, 2322, 2799
BstACI	GRCGYC	2 cut(s)	102, 126
BstAPI	GCANNNNNTGC	2 cut(s)	4375, 4615
BstAUI	TGTACA	1 cut(s)	4184
BstBAI	YACGTR	1 cut(s)	1159
BstBI	TTCGAA	1 cut(s)	4154
BstC8I	GCNNGC	4 cut(s)	3198, 3622, 3780, 4872
BstDSI	CCRYGG	9 cut(s)	108, 217, 367, 1576, 2129, 2446, 3408, 3516, 4347
BstENI	CCTNNNNNAGG	1 cut(s)	4044
BstFNI	CGCG	2 cut(s)	13, 234
BstHHI	GCGC	1 cut(s)	660
BstMAI	GTCTC	7 cut(s)	366, 767, 912, 2128, 3225, 3530, 4096
BstNI	CCWGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
BstNSI	RCATGY	8 cut(s)	471, 629, 1286, 1488, 2222, 2258, 3543, 3773
BstPAI	GACNNNNGTC	2 cut(s)	2219, 2255
BstSCI	CCNGG	7 cut(s)	1728, 2158, 2994, 3624, 4171, 4429, 4971
BstSFI	CTRYAG	7 cut(s)	726, 897, 1971, 2409, 2589, 3893, 4587
BstUI	CGCG	2 cut(s)	13, 234
BstV1I	GCAGC	8 cut(s)	148, 1451, 1875, 1903, 1993, 2506, 3907, 4372
BstV2I	GAAGAC	2 cut(s)	1098, 3579
BstX2I	RGATCY	6 cut(s)	555, 2333, 2680, 4513, 4710, 4886
BstYI	RGATCY	6 cut(s)	555, 2333, 2680, 4513, 4710, 4886
Bsu36I	CCTNAGG	1 cut(s)	4509
BsuI	GTATCC	4 cut(s)	1112, 1186, 1474, 2701
BtgI	CCRYGG	9 cut(s)	108, 217, 367, 1576, 2129, 2446, 3408, 3516, 4347
BtsI	GCAGTG	2 cut(s)	1114, 4746
BveI	ACCTGC	2 cut(s)	733, 2488
Cac8I	GCNNGC	4 cut(s)	3198, 3622, 3780, 4872
CaiI	CAGNNNCTG	6 cut(s)	358, 1262, 3149, 3838, 4178, 4436
CciI	TCATGA	2 cut(s)	175, 1701
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	6 cut(s)	722, 1610, 2266, 3956, 3967, 4316
CseI	GACGC	8 cut(s)	19, 91, 115, 122, 223, 1771, 2499, 2756
Csp6I	GTAC	9 cut(s)	16, 34, 2459, 2657, 3330, 3438, 4185, 4274, 4427
CviQI	GTAC	9 cut(s)	16, 34, 2459, 2657, 3330, 3438, 4185, 4274, 4427
DraI	TTTAAA	3 cut(s)	474, 502, 3642
DraIII	CACNNNGTG	2 cut(s)	1901, 3019
DriI	GACNNNNNGTC	1 cut(s)	3184
EaeI	YGGCCR	3 cut(s)	42, 3689, 4756
Eam1104I	CTCTTC	4 cut(s)	1971, 2304, 2322, 2799
Eam1105I	GACNNNNNGTC	1 cut(s)	3184
EarI	CTCTTC	4 cut(s)	1971, 2304, 2322, 2799
EciI	GGCGGA	1 cut(s)	4958
Ecl136II	GAGCTC	1 cut(s)	840
Eco130I	CCWWGG	8 cut(s)	108, 1576, 2129, 2446, 2626, 3408, 3516, 4347
Eco147I	AGGCCT	2 cut(s)	89, 2625
Eco24I	GRGCYC	2 cut(s)	842, 995
Eco31I	GGTCTC	1 cut(s)	4096
Eco32I	GATATC	2 cut(s)	3393, 3501
Eco47I	GGWCC	4 cut(s)	722, 2266, 3956, 4316
Eco53kI	GAGCTC	1 cut(s)	840
Eco57I	CTGAAG	9 cut(s)	1122, 1407, 1482, 2004, 2346, 2448, 2788, 3582, 4886
Eco81I	CCTNAGG	1 cut(s)	4509
EcoICRI	GAGCTC	1 cut(s)	840
EcoNI	CCTNNNNNAGG	1 cut(s)	4044
EcoO109I	RGGNCCY	1 cut(s)	1610
EcoRI	GAATTC	1 cut(s)	4788
EcoRII	CCWGG	7 cut(s)	1728, 2158, 2994, 3624, 4171, 4429, 4971
EcoRV	GATATC	2 cut(s)	3393, 3501
EcoT14I	CCWWGG	8 cut(s)	108, 1576, 2129, 2446, 2626, 3408, 3516, 4347
EcoT38I	GRGCYC	2 cut(s)	842, 995
ErhI	CCWWGG	8 cut(s)	108, 1576, 2129, 2446, 2626, 3408, 3516, 4347
Esp3I	CGTCTC	2 cut(s)	2128, 3225
FalI	AAGNNNNNCTT	2 cut(s)	3574, 3606
FaqI	GGGAC	3 cut(s)	1696, 2977, 3925
FauI	CCCGC	2 cut(s)	831, 1912
FauNDI	CATATG	2 cut(s)	1603, 3213
FbaI	TGATCA	3 cut(s)	360, 2980, 3289
FblI	GTMKAC	2 cut(s)	4406, 4815
Fnu4HI	GCNGC	9 cut(s)	66, 162, 1440, 1864, 1917, 1982, 2520, 3896, 4361
FriOI	GRGCYC	2 cut(s)	842, 995
Fsp4HI	GCNGC	9 cut(s)	66, 162, 1440, 1864, 1917, 1982, 2520, 3896, 4361
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	9 cut(s)	66, 162, 1440, 1864, 1917, 1982, 2520, 3896, 4361
GsaI	CCCAGC	2 cut(s)	459, 465
GsuI	CTGGAG	6 cut(s)	607, 671, 2139, 2181, 2550, 2727
HapII	CCGG	8 cut(s)	50, 83, 911, 3275, 3569, 3688, 4250, 4670
HgaI	GACGC	8 cut(s)	19, 91, 115, 122, 223, 1771, 2499, 2756
HhaI	GCGC	1 cut(s)	660
Hin1I	GRCGYC	2 cut(s)	102, 126
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	6 cut(s)	9, 325, 733, 1243, 2068, 3587
HindII	GTYRAC	6 cut(s)	9, 325, 733, 1243, 2068, 3587
HindIII	AAGCTT	3 cut(s)	1464, 1924, 3255
HpaII	CCGG	8 cut(s)	50, 83, 911, 3275, 3569, 3688, 4250, 4670
Hpy99I	CGWCG	4 cut(s)	107, 125, 693, 1765
HpyCH4IV	ACGT	2 cut(s)	1158, 2137
HpySE526I	ACGT	2 cut(s)	1158, 2137
Hsp92I	GRCGYC	2 cut(s)	102, 126
HspAI	GCGC	1 cut(s)	658
Kpn2I	TCCGGA	4 cut(s)	49, 82, 910, 3568
KpnI	GGTACC	1 cut(s)	19
Ksp22I	TGATCA	3 cut(s)	360, 2980, 3289
LguI	GCTCTTC	1 cut(s)	1971
Lsp1109I	GCAGC	8 cut(s)	148, 1451, 1875, 1903, 1993, 2506, 3907, 4372
LweI	GCATC	8 cut(s)	340, 1153, 1255, 1903, 2158, 2230, 3753, 4729
MaeII	ACGT	2 cut(s)	1158, 2137
MbiI	CCGCTC	1 cut(s)	826
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	6 cut(s)	555, 2333, 2680, 4513, 4710, 4886
MhlI	GDGCHC	4 cut(s)	418, 842, 995, 2209
MlsI	TGGCCA	1 cut(s)	4758
MluNI	TGGCCA	1 cut(s)	4758
MmeI	TCCRAC	8 cut(s)	262, 1068, 1784, 2456, 2636, 3168, 4492, 4991
Mox20I	TGGCCA	1 cut(s)	4758
MroI	TCCGGA	4 cut(s)	49, 82, 910, 3568
MroXI	GAANNNNTTC	6 cut(s)	171, 2667, 2793, 3564, 3576, 4788
MscI	TGGCCA	1 cut(s)	4758
MslI	CAYNNNNRTG	2 cut(s)	717, 4331
Msp20I	TGGCCA	1 cut(s)	4758
MspA1I	CMGCKG	1 cut(s)	1709
MspI	CCGG	8 cut(s)	50, 83, 911, 3275, 3569, 3688, 4250, 4670
MspR9I	CCNGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	6 cut(s)	413, 660, 2108, 3553, 4059, 4445
MvaI	CCWGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
MvnI	CGCG	2 cut(s)	13, 234
NcoI	CCATGG	7 cut(s)	108, 1576, 2129, 2446, 3408, 3516, 4347
NdeI	CATATG	2 cut(s)	1603, 3213
NlaIV	GGNNCC	5 cut(s)	17, 1611, 1801, 3657, 4318
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	9 cut(s)	677, 1028, 1587, 3019, 3834, 4097, 4333, 4744, 4879
NspI	RCATGY	8 cut(s)	471, 629, 1286, 1488, 2222, 2258, 3543, 3773
NspV	TTCGAA	1 cut(s)	4154
OliI	CACNNNNGTG	1 cut(s)	4331
PagI	TCATGA	2 cut(s)	175, 1701
PceI	AGGCCT	2 cut(s)	89, 2625
PciI	ACATGT	4 cut(s)	1282, 1484, 2218, 2254
PciSI	GCTCTTC	1 cut(s)	1971
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	6 cut(s)	413, 660, 2108, 3553, 4059, 4445
PdmI	GAANNNNTTC	6 cut(s)	171, 2667, 2793, 3564, 3576, 4788
PflMI	CCANNNNNTGG	1 cut(s)	1577
PfoI	TCCNGGA	1 cut(s)	2158
PkrI	GCNGC	9 cut(s)	67, 163, 1441, 1865, 1918, 1983, 2521, 3897, 4362
Ppu21I	YACGTR	1 cut(s)	1159
PscI	ACATGT	4 cut(s)	1282, 1484, 2218, 2254
PshAI	GACNNNNGTC	2 cut(s)	2219, 2255
PsiI	TTATAA	1 cut(s)	2949
Psp124BI	GAGCTC	1 cut(s)	842
Psp6I	CCWGG	7 cut(s)	1728, 2158, 2994, 3624, 4171, 4429, 4971
PspFI	CCCAGC	2 cut(s)	455, 461
PspGI	CCWGG	7 cut(s)	1728, 2158, 2994, 3624, 4171, 4429, 4971
PspN4I	GGNNCC	5 cut(s)	17, 1611, 1801, 3657, 4318
PspPI	GGNCC	6 cut(s)	722, 1610, 2266, 3956, 3967, 4316
PsrI	GAACNNNNNNTAC	2 cut(s)	913, 945
PstI	CTGCAG	3 cut(s)	730, 901, 3897
PstNI	CAGNNNCTG	6 cut(s)	358, 1262, 3149, 3838, 4178, 4436
PsuI	RGATCY	6 cut(s)	555, 2333, 2680, 4513, 4710, 4886
PvuII	CAGCTG	1 cut(s)	1709
RsaI	GTAC	9 cut(s)	17, 35, 2460, 2658, 3331, 3439, 4186, 4275, 4428
RsaNI	GTAC	9 cut(s)	16, 34, 2459, 2657, 3330, 3438, 4185, 4274, 4427
RseI	CAYNNNNRTG	2 cut(s)	717, 4331
SacI	GAGCTC	1 cut(s)	842
SapI	GCTCTTC	1 cut(s)	1971
SatI	GCNGC	9 cut(s)	66, 162, 1440, 1864, 1917, 1982, 2520, 3896, 4361
Sau96I	GGNCC	6 cut(s)	722, 1610, 2266, 3956, 3967, 4316
ScaI	AGTACT	3 cut(s)	2658, 3331, 3439
ScrFI	CCNGG	7 cut(s)	1730, 2160, 2996, 3626, 4173, 4431, 4973
SduI	GDGCHC	4 cut(s)	418, 842, 995, 2209
SfaNI	GCATC	8 cut(s)	340, 1153, 1255, 1903, 2158, 2230, 3753, 4729
SfcI	CTRYAG	7 cut(s)	726, 897, 1971, 2409, 2589, 3893, 4587
SfuI	TTCGAA	1 cut(s)	4154
SinI	GGWCC	4 cut(s)	722, 2266, 3956, 4316
SmiMI	CAYNNNNRTG	2 cut(s)	717, 4331
SmlI	CTYRAG	4 cut(s)	2143, 3707, 4063, 4268
SmoI	CTYRAG	4 cut(s)	2143, 3707, 4063, 4268
SseBI	AGGCCT	2 cut(s)	89, 2625
SsiI	CCGC	9 cut(s)	13, 66, 204, 824, 1820, 1919, 3512, 3878, 4969
SspI	AATATT	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	842
StuI	AGGCCT	2 cut(s)	89, 2625
StyD4I	CCNGG	7 cut(s)	1728, 2158, 2994, 3624, 4171, 4429, 4971
StyI	CCWWGG	8 cut(s)	108, 1576, 2129, 2446, 2626, 3408, 3516, 4347
TaiI	ACGT	2 cut(s)	1161, 2140
TaqI	TCGA	6 cut(s)	96, 2603, 4085, 4154, 4290, 4529
TatI	WGTACW	4 cut(s)	2656, 3329, 3437, 4184
TauI	GCSGC	1 cut(s)	68
TseFI	GTSAC	9 cut(s)	677, 1028, 1587, 3019, 3834, 4097, 4333, 4744, 4879
TseI	GCWGC	8 cut(s)	161, 1439, 1863, 1916, 1981, 2519, 3895, 4360
Tsp45I	GTSAC	9 cut(s)	677, 1028, 1587, 3019, 3834, 4097, 4333, 4744, 4879
TspGWI	ACGGA	5 cut(s)	40, 548, 1211, 2269, 3249
Van91I	CCANNNNNTGG	1 cut(s)	1577
VpaK11BI	GGWCC	4 cut(s)	722, 2266, 3956, 4316
XagI	CCTNNNNNAGG	1 cut(s)	4044
XbaI	TCTAGA	2 cut(s)	4451, 4501
XceI	RCATGY	8 cut(s)	471, 629, 1286, 1488, 2222, 2258, 3543, 3773
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1051, 3744, 3950
XmiI	GTMKAC	2 cut(s)	4406, 4815
XmnI	GAANNNNTTC	6 cut(s)	171, 2667, 2793, 3564, 3576, 4788
ZrmI	AGTACT	3 cut(s)	2658, 3331, 3439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.